GENSCAN 1.0	Date run:  6-Nov-116	Time: 00:57:03

Sequence gi568815589r:125338890_125772574 : 433685 bp : 43.44% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   7930   8052  123  2  0  135   59    67 0.590   9.06
 1.02 Intr +  11465  11515   51  0  0   84   94    24 0.686   1.48
 1.03 Intr +  11824  11983  160  2  1   34   90    47 0.428  -1.45
 1.04 Intr +  15765  15952  188  0  2   77   88    78 0.882   6.03
 1.05 Intr +  16755  16968  214  1  1   -2  100   274 0.702  17.37
 1.06 Intr +  20531  20603   73  2  1   37   75    19 0.496  -5.09
 1.07 Intr +  21639  21836  198  2  0   52   86    83 0.525   4.05
 1.08 Intr +  31848  31952  105  2  0  102   40    53 0.042   2.31
 1.09 Term +  33696  33806  111  2  0   75   42    90 0.036   1.66
 1.10 PlyA +  39462  39467    6                               1.05

 2.00 Prom +  56068  56107   40                              -4.76
 2.01 Init +  63532  63610   79  0  1   91   68    97 0.191   7.29
 2.02 Intr +  69126  69255  130  1  1   49   86    57 0.056   1.35
 2.03 Intr +  69513  69606   94  0  1  120   41    42 0.838   2.67
 2.04 Intr +  72482  72627  146  1  2   56  100    67 0.650   3.78
 2.05 Intr +  74660  74758   99  2  0   83   76    45 0.385   2.03
 2.06 Intr +  77633  77676   44  2  2  105   98    12 0.037   1.78
 2.07 Intr +  90695  90764   70  0  1  118   64    48 0.092   3.64
 2.08 Intr +  91166  91347  182  2  2  101   74    81 0.728   7.51
 2.09 Term +  91619  91755  137  0  2   62   43    60 0.217  -2.92
 2.10 PlyA +  92440  92445    6                               1.05

 3.05 PlyA -  98527  98522    6                               1.05
 3.04 Term - 100964 100779  186  2  0  102   54   157 0.767  11.19
 3.03 Intr - 105709 105612   98  2  2  121  113    83 0.942  13.83
 3.02 Intr - 107706 107616   91  0  1   93   28    97 0.595   3.77
 3.01 Init - 112705 112616   90  1  0   75   75    16 0.158  -0.47
 3.00 Prom - 119251 119212   40                              -2.16

 4.06 PlyA - 121093 121088    6                               1.05
 4.05 Term - 123461 123289  173  0  2   98   34    60 0.332  -0.41
 4.04 Intr - 129220 129083  138  2  0   92   81    61 0.575   6.24
 4.03 Intr - 145694 145554  141  0  0  116   97    56 0.638   9.62
 4.02 Intr - 158350 158320   31  1  1   81   94    12 0.156  -1.20
 4.01 Init - 163369 163364    6  1  0   82  103     4 0.382   2.04
 4.00 Prom - 164138 164099   40                              -1.66

 5.08 PlyA - 165430 165425    6                               1.05
 5.07 Term - 167528 167368  161  0  2  113   43   186 0.747  14.70
 5.06 Intr - 204279 204170  110  2  2  111   75    77 0.802   8.63
 5.05 Intr - 220920 220744  177  2  0  102   82   209 0.827  20.73
 5.04 Intr - 230679 230629   51  2  0   70   91    52 0.425   1.72
 5.03 Intr - 246838 246666  173  1  2  123   28   205 0.079  16.74
 5.02 Intr - 250533 250517   17  1  2   55   92     8 0.129  -6.84
 5.01 Init - 255060 254988   73  0  1   77   71    63 0.460   4.73
 5.00 Prom - 255303 255264   40                              -7.86

 6.00 Prom + 256347 256386   40                              -8.56
 6.01 Sngl + 256995 257561  567  2  0   14   37   412 0.475  24.85
 6.02 PlyA + 258061 258066    6                               1.05

 7.00 Prom + 263079 263118   40                              -1.86
 7.01 Init + 264513 264568   56  2  2   87   41    74 0.131   3.36
 7.02 Term + 274294 274465  172  1  1   65   37   123 0.253   2.20
 7.03 PlyA + 275323 275328    6                               1.05

 8.00 Prom + 276503 276542   40                              -2.26
 8.01 Init + 283307 283336   30  1  0   62  110     8 0.202   0.14
 8.02 Term + 293779 293895  117  0  0   83   44    83 0.424   1.94
 8.03 PlyA + 294455 294460    6                               1.05

 9.05 PlyA - 295419 295414    6                               1.05
 9.04 Term - 297178 297128   51  1  0   86   43    47 0.017  -2.57
 9.03 Intr - 318910 318762  149  2  2   76  115    93 0.891  10.75
 9.02 Intr - 326075 326022   54  0  0  101   86    13 0.636   1.35
 9.01 Init - 333685 333427  259  1  1   79   97   190 0.812  16.30
 9.00 Prom - 356533 356494   40                              -3.36

10.00 Prom + 359069 359108   40                              -4.76
10.01 Init + 367926 368022   97  2  1   73   80    82 0.454   4.37
10.02 Term + 368229 368404  176  1  2   42   48   214 0.368  10.72
10.03 PlyA + 369177 369182    6                               1.05

11.00 Prom + 370144 370183   40                              -6.86
11.01 Init + 371699 371777   79  1  1   93   61    52 0.408   4.22
11.02 Intr + 392534 392652  119  0  2  145   50   -12 0.001   0.88
11.03 Intr + 406513 406587   75  0  0  113   84    80 0.915   9.81
11.04 Intr + 407377 407528  152  0  2   43   33    84 0.779  -2.64
11.05 Intr + 408045 408149  105  0  0  108    9    87 0.684   2.13
11.06 Intr + 408522 408764  243  0  0   68  -20   326 0.708  16.41
11.07 Intr + 409661 409734   74  2  2  105  110    56 0.472   8.55
11.08 Term + 410056 410135   80  2  2   74   42    51 0.301  -2.97
11.09 PlyA + 412058 412063    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init +  90167  90264   98  1  2   79   69   130 0.876   8.01
S.002 Term - 246838 246662  177  1  0  123   36   220 0.898  17.99
S.003 Init - 396157 396088   70  1  1   97   48    87 0.867   6.81


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815589r:125338890_125772574|GENSCAN_predicted_peptide_1|407_aa
XDPSPRLSAQAQVAEDILDKYRNAIKRTSPSDGAMANYESTVLTHSTRNGLPDHTDPEDN
EIVCFLKVQIAEAINLQDKNLMAQLQETMRCVCRFDNRTCRKLLASIAEDYRKRAPYIAY
LTRCRQGLQTTQAHLERLLQRVLRDKEVANRYFTTVCVRLLLESKEKKIREFIQDFQKLT
AADDKTAQVEDFLQFLYGAMAQDVIWQNASEEQLQDAQLAIERSVMNRIFKLAFYPNQDG
DILRDQVLHEHIQRLSKVVTANHRALQIPEVYLREAPWPSAQSEIRTISAYKTPRDKVQC
ILRMCSTIMNLLSLANEDSVPGADDFVPVLVFVLIKVPLHFDHWRPYFPFRVAVAVTAEA
ASAAAALGQHARFPGLRRTATCKGKSSSTQPCSCHSSCQSLLVGICV

>gi568815589r:125338890_125772574|GENSCAN_predicted_CDS_1|1224_bp
natgatcccagccctagactcagtgcacaagctcaggtggctgaggatattctggacaaa
tacaggaatgccattaaacggaccagccccagtgatggagcaatggcaaactatgaaagt
acagtgctgacccattcaacaaggaatggtttaccagaccacacagacccagaagacaat
gaaattgtatgcttcttaaaagttcaaatagctgaagcaattaatttacaagataagaat
ctaatggctcaacttcaagaaacaatgcgctgtgtgtgccgttttgataataggacttgt
aggaaactgctggcttcgattgctgaggactacagaaaaagagccccatatattgcttat
ctcactcgttgtcgacaaggactacagaccacacaggctcacctggaaaggctattgcaa
agagttttgcgggacaaagaagtggccaatcgatactttaccactgtctgtgtgagatta
ctgcttgagagcaaagaaaagaagatcagggaattcattcaagactttcagaaactcacc
gcagctgacgataaaactgctcaggtagaagattttctgcagtttctttatggtgcaatg
gcccaggatgtcatatggcaaaacgcgagtgaagaacagcttcaagatgcacagctggcc
attgagcgaagcgtgatgaaccggattttcaagctcgccttctaccctaatcaagatggg
gacatacttcgcgaccaggttcttcatgaacatatccagagattgtctaaagtagtgact
gcaaatcacagagctcttcagataccagaggtttatcttcgagaagcaccatggccatct
gcacaatcagaaatcaggacaataagtgcttataaaaccccccgggacaaagtgcagtgc
atcctgagaatgtgctctacgattatgaacctcctgagcctggccaatgaggactctgtc
cctggagcggatgactttgttcctgtgttggtgtttgtgttgataaaggtccctttacat
tttgatcactggcgaccctattttccttttcgtgtggctgtggcggtgacagcagaggct
gcatctgctgctgctgctttggggcagcatgctaggtttccaggactgcgacgcacagcg
acctgcaaaggcaagagcagcagcacccagccctgcagctgtcacagttcttgccagtcc
ctgctggttggtatctgcgtctga

>gi568815589r:125338890_125772574|GENSCAN_predicted_peptide_2|326_aa
MAMMRMVTVPWAQLCAKSFLIPLMGAGRRRDLGWEPPEEEETNREPEGAGYTAGLTGRPG
AGNLATESGRCHRWASAAKAPETGPPYPRAFPAARACEGAEAGPSPEFLNHLQGCLHLHL
PLLLCPDPMCWVNWVLPSPPALDANPRAASAWIKGMRHRAQLGCGFSRREQEGKPRIQGS
KSRVRPLLQAALPGTQKGWLLRSLTMEGGHMGGELASMSGRCPPLSPSNGMHQGRGSFSP
GMFSGPGYRQDTGRTCPPPLPSCLLQTSGHPGTRGWVKALDSSCTDAAHSTSAFPCRDAD
ALYKSQLTRLLQSQTLVGAQTVAHLC

>gi568815589r:125338890_125772574|GENSCAN_predicted_CDS_2|981_bp
atggcgatgatgaggatggtgaccgtaccgtgggctcagctgtgcgccaagtcctttctg
atccccttgatgggtgctgggcggcgtcgagacttggggtgggagcccccggaggaggaa
gagacgaaccgggagccagagggagccgggtacaccgcgggactcacggggcgccccggg
gccgggaatctagctacggaatccggtcgctgccaccgctgggcctcggctgcgaaggct
ccagaaacgggtcccccgtaccctcgggccttcccagccgcgcgggcgtgcgagggagcc
gaggctggaccaagtcctgagttcctaaaccaccttcagggctgcctgcacctgcacctc
ccgctcctgctgtgccctgatcccatgtgctgggtgaactgggttcttccgagccctcca
gccctggatgctaaccccagagctgcaagtgcttggattaaaggcatgcgccaccgcgcc
cagctaggatgtggcttttcgagaagagaacaggagggcaagccacggatccagggctcc
aaaagcagggttcggcccttgcttcaggcggcactgccaggtacccagaaagggtggctg
ctgaggtccctgaccatggaaggtgggcacatgggtggcgagctggcctccatgtctggg
aggtgtcctccactgtcaccctccaatgggatgcatcagggccggggcagcttttcccca
ggcatgttctcaggcccgggctacagacaggacacggggagaacgtgtccacctccactc
cccagctgcctgctgcagacatctggtcacccgggcactagaggatgggtcaaagccctg
gactcatcctgcacggatgcagctcactccaccagtgccttcccctgccgggatgcagac
gctctttataaatctcaattaacaaggctgctgcagtcacagacactggttggagcccaa
actgtggctcatctctgttga

>gi568815589r:125338890_125772574|GENSCAN_predicted_peptide_3|154_aa
MLMSVLDMLHWGPCGGGSHTHCSALKLWRKMAVLVHSMANKGARIVPPHRDVTDKILMLW
GHAIFKLTYLSNHDYKHLYFESDAATVNEIVLKCWFCCWTPTHQAASSPGPGPSLSAVAL
GKRLAVQLLHRVEDAHATPGRLPGLRGSSSVQKA

>gi568815589r:125338890_125772574|GENSCAN_predicted_CDS_3|465_bp
atgctgatgtctgttctggacatgctgcactgggggccatgtggaggtggcagccatacc
cactgctcagctctgaaactctggagaaagatggctgtgcttgttcacagcatggccaac
aaaggtgcccgcattgttcctccacacagggatgtcaccgacaagattctgatgttgtgg
ggtcacgcaatatttaaactcacgtatctaagcaatcacgactataaacacctctacttt
gaatcggacgctgctaccgtcaatgaaattgtgctcaagtgctggttctgctgctggaca
cccactcaccaggcagcaagctccccagggccaggaccaagtctcagcgctgtagcgctg
gggaagcgcctggcggtgcagctgctacacagagtggaagatgcacatgcgactccgggc
agactcccagggcttcgtggaagcagcagcgtgcagaaggcctga

>gi568815589r:125338890_125772574|GENSCAN_predicted_peptide_4|162_aa
MVVILRKGLNSPGSRADGVFEEDSQIDIATVQDMLSSHHYKSFKVSMIHRLRFTTDVQLG
ISGDKVEIDPVTNQKASTKFWIKQKPISIDSDLLCACDLAEEKSPKLQASHVYVWLNVPV
CAFLTPSPPPTKESRETVAEGFMLVTEITLGTPQLIRRILAT

>gi568815589r:125338890_125772574|GENSCAN_predicted_CDS_4|489_bp
atggtggttatactgaggaagggcctcaactcaccaggttcaagggcagacggggttttt
gaggaggattcgcaaattgacatagccacagtacaggatatgcttagcagccaccattac
aagtcattcaaagtcagcatgatccacagactgcgattcacaaccgacgtacagctaggt
atctctggagacaaagtagagatagaccctgttacgaatcagaaagccagcactaagttt
tggattaagcagaaacccatctcaatcgattccgacctgctctgtgcctgtgaccttgct
gaagagaaaagccccaagctgcaggcctcacatgtatatgtgtggctgaatgtgccagta
tgtgcattcctcacccccagcccacccccaacaaaggagagcagggagactgtggctgaa
ggattcatgcttgttactgaaatcaccctgggcacaccccagcttatccgtcggatcctc
gccacctga

>gi568815589r:125338890_125772574|GENSCAN_predicted_peptide_5|253_aa
MPVKKKIGVGYVKFQILTAFAKPSGSSVCQGHVGTTATKKIDVYLPLHSSQDRLLPMTVV
TMASARVQDLIGLICWQYTSEGREPKLKISYAKQLIFLAFEFYHSDNVSAYCLHIAEDDG
EVDTDFPPLDSNEPIHKFGFSTLALVEKYSSPGLTSKESLFVRINAAHGFSLIQVDNTKV
TMKEILLKAVKRRKGSQKVSGPQYRLEKQSEPNVAVDLDSTLESQSAWEFCLVRENSTLA
ASLHARFVRCKLA

>gi568815589r:125338890_125772574|GENSCAN_predicted_CDS_5|762_bp
atgccagtgaagaagaaaattggtgttggatatgttaaatttcagattctgactgcattt
gcaaagccatcagggtcttctgtgtgccagggtcatgtaggtacaacagcaaccaagaag
atcgatgtctacctccctctgcactcgagccaggacagactgctgccaatgaccgtggtg
acaatggccagcgccagggtgcaggacctgatcgggctcatctgctggcagtatacaagc
gaaggacgggagccgaagctcaaaatttcttatgccaagcagctgatatttctggctttt
gaattttaccacagtgacaatgtcagtgcctactgcctgcatattgctgaggatgatggg
gaggtggacaccgatttccccccgctggattccaatgagcccattcataagtttggcttc
agtactttggccctggttgaaaagtactcatctcctggtctgacatccaaagagtcactc
tttgttcgaataaatgctgctcatggattctcccttattcaggtggacaacacaaaggtt
accatgaaggaaatcttactgaaggcagtgaagcgaagaaaaggatcccagaaagtttca
ggccctcagtaccgcctggagaagcagagcgagcccaatgtcgccgttgacctggacagc
actttggagagccagagcgcatgggagttctgcctggtccgcgagaacagtacgttggcc
gcctcgctccatgcccgctttgtccgttgcaaacttgcttag

>gi568815589r:125338890_125772574|GENSCAN_predicted_peptide_6|188_aa
MQGHTRWIGVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQRGKTEV
IEITTDRGSGKKRGLAFVTFDGHDSVDKTVIQKHHTVNGHNCEVRKALSKQEMANTSSSE
RGRSGSGNFGGGREGDFGRNDNFGHGGNFSGCGAFGGNHGGGGYGGSRDGYNGFGTDGSN
FGGWWKLQ

>gi568815589r:125338890_125772574|GENSCAN_predicted_CDS_6|567_bp
atgcaaggccacacaaggtggatcggagttgtggaaccaaagagagctgtctcaagagaa
gattctcaaagaccaggtgcccacttaactgtgaaaaagatatttgttggtggcattaaa
gaagacactgaagaacatcacctgcgagattattttgaacagcgtggaaaaactgaagtg
attgaaatcacgactgaccgaggcagtggcaagaaaaggggacttgcctttgtaaccttt
gatggccacgactccgtggataagactgtcattcaaaaacaccatactgtgaatggccac
aattgtgaagttaggaaagctctgtcaaagcaagagatggctaatacttcatccagcgaa
agaggtcgaagtggttctggaaactttggtggtggtcgtgaaggtgacttcggtaggaat
gacaactttggtcatggaggaaacttcagtggttgtggtgcctttggtggcaaccatggt
ggtggtggatatggtggcagtagggatggctataatggatttggtactgatggaagcaat
tttggagggtggtggaagctacaatga

>gi568815589r:125338890_125772574|GENSCAN_predicted_peptide_7|75_aa
MGEQAHDINMASSSNTSKGNEVQRRPEGVLPELNMKPVNPSSTKGGLYHPDSLFSGIKRI
FPNCWKECWLMAISC

>gi568815589r:125338890_125772574|GENSCAN_predicted_CDS_7|228_bp
atgggcgagcaagcacatgacatcaacatggcatcgagctccaacacaagcaaaggaaac
gaagtccaacgcagacctgaaggtgtgctcccagaacttaacatgaagccagtaaaccca
agcagcaccaagggtggactgtaccacccagattccctcttttcaggaataaagcgcata
tttcccaactgctggaaggaatgctggctgatggctatcagctgttag

>gi568815589r:125338890_125772574|GENSCAN_predicted_peptide_8|48_aa
MSSGVLQHCRPSAFHKCHQPIINVLIQVPDSNEHTRDLQLATKDSSPV

>gi568815589r:125338890_125772574|GENSCAN_predicted_CDS_8|147_bp
atgagctctggtgttctgcagcactgtaggccttctgccttccacaagtgtcatcagcct
atcatcaatgttctcattcaggtccctgacagcaatgaacacacaagagacctacagctt
gccacgaaagatagctctccagtttga

>gi568815589r:125338890_125772574|GENSCAN_predicted_peptide_9|170_aa
MAFLDNPTIILAHIRQSHVTSDDTGMCEMVLIDHDVDLEKIHPPSMPGDSGSEIQGSNGE
TQGYVYAQSVDITSSWDFGIRRRSNTGEKTGAQRPNNFPKLLVSTQELKSLFEKKSLKEK
PPISGKQSILSVRLEQCPLQLNNPFNEYSKFDGKEKALQSSSCSHYTSRS

>gi568815589r:125338890_125772574|GENSCAN_predicted_CDS_9|513_bp
atggccttcttggacaatccaactatcattctagctcatattcgacagtcacatgtgacc
agtgatgacacgggaatgtgtgagatggttctcattgatcatgatgttgacctagagaag
attcatcctccttcaatgcctggagacagtgggtcagaaattcagggaagcaatggtgag
actcagggctatgtatatgcccagtcagtcgatattacctcaagttgggactttggtatt
agaagacgctcaaacacaggtgagaaaactggtgctcagaggccaaataactttcccaag
ttacttgtaagtacccaggagttaaagtcactgtttgaaaaaaaatctctcaaagagaag
cctccaatttctgggaagcagtcgatattatctgtacgcctagaacagtgccctctgcag
ctgaataacccttttaacgagtattccaaatttgatggcaaggagaaggcacttcaaagc
agcagctgttcccattacaccagccgcagctga

>gi568815589r:125338890_125772574|GENSCAN_predicted_peptide_10|90_aa
MARKRTRPGHLNKGPAGGPPGSAETGGVRGPPAAASRVSPHAPAARRRRPAEQQPYYPEP
HTTRNHTPAFRKSPTGKEPLAGDVVRKPQS

>gi568815589r:125338890_125772574|GENSCAN_predicted_CDS_10|273_bp
atggccaggaaacgaacgcgcccgggccacctgaacaagggcccggcaggcggcccgccg
ggcagcgctgaaactggaggggtgagagggccgccagctgccgcttcccgggttagccct
catgcccctgctgctcgccgccgccggccggccgagcagcagccctattaccccgagccg
cacacgacccggaaccacaccccggcgttccggaagtccccgaccgggaaggagcctctg
gctggggacgtagtgcgcaagccccagagctga

>gi568815589r:125338890_125772574|GENSCAN_predicted_peptide_11|308_aa
MVDRHGVKRKPDVLPMASATEEQHWGGIAAKGSITQAIDPIPSTSPGIHSWGTFIPLHLS
CYRLLPVRQLTEFGEGTKRLFRTTEPKDSSREERESAPGAVRGVKLTGAAGEHTVGFAAS
CPLSHTQPPAPMTAKSMEQESGPPPPPPPAAAAAASPGAAGARIPPGRGGGGGRGGHLRL
SRRPLPPARGGMDDQSRMLQTLAGVNLAGHSVQGGMALPPPPHGHEGADGDGRKQDIGDI
LHQIMTITDQSLDEAQAKKHALNCHRMKPALFSVLCEIKEKTVFKRSNGRLDARTESPGE
ASPELCFT

>gi568815589r:125338890_125772574|GENSCAN_predicted_CDS_11|927_bp
atggtggacagacatggggtgaaaaggaaaccagacgtgctccccatggcatctgcaact
gaggaacagcactggggaggtattgctgccaagggcagcatcacccaggccatagacccc
atcccctctacttccccagggattcactcatgggggacttttatccccctccatctctcc
tgctacagactccttcctgtaagacagcttactgagtttggagaaggaacaaagagactt
ttccgaaccaccgaaccaaaggactcatctagggaagagcgggaaagtgcaccaggagct
gtccgaggcgtgaagctcacgggcgcggcgggggagcacacggttggctttgcagcgagt
tgcccactgtcccatacacaaccccccgctcccatgactgccaaaagcatggagcaggag
tcggggcctcctcctccgccgccgcccgccgccgccgccgctgcctcccccggggccgcc
ggggctcggatcccgcctggccgaggcggcggcggcggccgaggagggcaccttcgcctc
agccgccgcccgctcccgcccgcgcgcggcgggatggacgatcaatccaggatgctgcag
actctggccggggtgaacctggctggccactcggtgcaggggggcatggccctgccgcct
cccccgcacggccacgaaggggcggacggcgacggcaggaagcaggacatcggcgacatc
ctccaccagatcatgaccatcaccgaccagagcttggacgaggcgcaagcaaagaaacat
gccctgaactgtcacagaatgaaaccagcgctcttcagcgtcctgtgtgagatcaaagag
aaaacagtttttaaaaggagcaacgggagactggatgccaggaccgagtccccgggagaa
gcatcgcccgaactttgttttacttag