GENSCAN 1.0	Date run:  8-Nov-116	Time: 11:24:27

Sequence gi568815595r:48757713_48998794 : 241082 bp : 45.56% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.08 Intr -   7366   7292   75  1  0   88  109   113 0.601  13.11
 1.07 Intr -  15396  15243  154  2  1  109  105    91 0.998  12.97
 1.06 Intr -  25380  25274  107  0  2   82   70   135 0.080  10.11
 1.05 Intr -  36337  36285   53  2  2   74   90    69 0.158   4.33
 1.04 Intr -  39958  39892   67  1  1  106   19    46 0.100  -2.02
 1.03 Intr -  49972  49937   36  1  0  138   91    44 0.981   8.16
 1.02 Intr -  84733  84285  449  2  2   61   86    95 0.170  -0.33
 1.01 Init -  89884  89623  262  1  1   91  102   429 0.765  41.83
 1.00 Prom -  93303  93264   40                              -3.86

 2.10 PlyA -  95164  95159    6                               1.05
 2.09 Term - 100060  99998   63  1  0   94   54    45 0.838  -0.41
 2.08 Intr - 100919 100795  125  0  2   84  101   120 0.949  13.20
 2.07 Intr - 101489 101380  110  1  2   70  105   114 0.988  11.23
 2.06 Intr - 101915 101843   73  0  1   90   78   -13 0.777  -3.64
 2.05 Intr - 104947 104830  118  1  1  139   76   133 0.790  17.24
 2.04 Intr - 121736 121646   91  1  1   81  110    14 0.822   2.90
 2.03 Intr - 126412 126285  128  1  2  103  109   142 0.948  17.28
 2.02 Intr - 134360 134268   93  2  0  105   73     3 0.566   0.66
 2.01 Init - 141082 140978  105  1  0   96   86   241 0.998  24.92
 2.00 Prom - 155414 155375   40                              -4.36

 3.02 PlyA - 155951 155946    6                               1.05
 3.01 Sngl - 161437 160565  873  1  0   47   41   242 0.877  11.37
 3.00 Prom - 164211 164172   40                              -7.46

 4.00 Prom + 165006 165045   40                              -5.56
 4.01 Init + 169847 170101  255  1  0   56  105   447 0.646  40.43
 4.02 Intr + 178129 178178   50  0  2   39   78    42 0.017  -4.22
 4.03 Intr + 187424 187469   46  2  1   89  119    27 0.094   4.31
 4.04 Intr + 203900 203967   68  1  2  138  110    11 0.996   6.00
 4.05 Intr + 207207 207270   64  0  1  126   84    34 0.999   5.52
 4.06 Intr + 209413 209563  151  0  1  129   92    66 0.993  10.84
 4.07 Intr + 210822 210943  122  1  2   57   64    72 0.854   1.91
 4.08 Intr + 212883 212992  110  2  2   77   99   125 0.995  11.58
 4.09 Intr + 215987 216104  118  2  1   39   77    81 0.951   2.57
 4.10 Intr + 217105 217155   51  0  0  101   89    45 0.967   5.00
 4.11 Intr + 217246 217267   22  0  1   94  113     8 0.978   1.02
 4.12 Intr + 221770 221921  152  2  2  109   73   147 0.891  15.18
 4.13 Intr + 222641 222784  144  1  0   89   65   190 0.994  17.28
 4.14 Intr + 223948 224016   69  0  0  103   95    70 0.997   8.58
 4.15 Intr + 225184 225304  121  0  1   82   80    62 0.413   4.87
 4.16 Intr + 231959 232249  291  0  0   16   10   236 0.022   5.71
 4.17 Intr + 232444 232898  455  2  2   34  100   558 0.030  44.58
 4.18 Intr + 233121 233202   82  2  1   98  123   127 0.996  16.41
 4.19 Term + 236494 236585   92  2  2   73   43    70 0.126  -1.12
 4.20 PlyA + 236882 236887    6                               1.05

 5.03 PlyA - 237771 237766    6                               1.05
 5.02 Term - 239822 239506  317  0  2   75   50   232 0.919  13.20
 5.01 Intr - 240642 240470  173  2  2   84   84   252 0.937  23.99

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init + 232545 232898  354  2  0  100  100   558 0.948  53.34


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815595r:48757713_48998794|GENSCAN_predicted_peptide_1|401_aa
MSHIQIPPGLTELLQGYTVEVLRQQPPDLVEFAVEYFTRLREARAPASVLPAATPRQSLG
HPPPEPGPDRVADAKGDSESEEDEDLEVLEVVARAIRQEKEIKAIQLGKEEVKLSLFADD
MIVYLENPIVSAPNLLKLISNFSKVSGYKINAQKSQAFLYTNNRKTESQVMSELPFTIAS
KRIKYLGIQLTRDVKDLFKENYKPLLNEIKEDTNKWKNIPCSWIGRINIVKMAILSKFQF
LADLIDEYQDIGSLLGTWYRWHYCTSGMGHTICAETYNPDEEEEDTDPREQLSQVLDAMF
ERIVKADEHVIDQGDDGDNFYVIERGTYDILVTKDNQTRSVGQYDNRGSFGELALMYNTP
RAATIVATSEGSLWGLVSERMKIVDVIGEKIYKDGERIITQ

>gi568815595r:48757713_48998794|GENSCAN_predicted_CDS_1|1203_bp
atgagccacatccagatcccgccggggctcacggagctgctgcagggctacacggtggag
gtgctgcgacagcagccgcctgacctcgtcgaattcgcagtggagtacttcacccgcctg
cgcgaggcccgcgccccagcctcagtcctgcccgccgccaccccacgccagagcctgggc
caccccccgccagaacccggcccggaccgtgtcgccgacgccaaaggggacagcgagtcg
gaggaggacgaggacttggaagtgttggaagttgtggccagggcaattaggcaggagaag
gaaataaaggctattcagttaggaaaagaggaagtcaaattgtccctgtttgcagatgac
atgattgtatatctagaaaaccccattgtctcagccccaaatctccttaagctgataagc
aacttcagcaaagtctcaggatacaaaatcaatgcacaaaaatcacaagcattcttatat
accaataacagaaaaacagagagccaagtcatgagtgaactcccattcacaattgcttca
aagagaataaaatacctaggaatccaacttacaagggacgtgaaggacctcttcaaggag
aactacaaaccactgctcaatgaaataaaagaggatacaaacaaatggaagaacattcca
tgctcatggataggaagaatcaatatagtgaaaatggccatactgtccaagttccagttc
ctagcagatttaatagacgagtatcaggatatagggtccctgttgggcacttggtatcga
tggcattactgcacaagtggcatgggccacacaatctgtgctgagacctataaccctgat
gaggaagaggaagatacagatccaagggaacagctttctcaagttctcgatgccatgttt
gaaaggatagtcaaagctgatgagcatgtcattgaccaaggagatgatggagacaacttt
tatgtcatagaacggggaacttatgacattttagtaacaaaagataatcaaacccgctct
gttggtcaatatgacaaccgtggcagttttggagaactagctctgatgtacaacaccccg
agagctgctaccattgttgctacctcagaaggctccctttggggactggtgtcagaacga
atgaagattgtggatgtaataggagagaagatctataaggatggagaacgcataatcact
cag

>gi568815595r:48757713_48998794|GENSCAN_predicted_peptide_2|301_aa
MADQPKPISPLKNLLAGGFGGVCLVFVGHPLDTVKVRLQTQPPSLPGQPPMYSGTFDCFR
KTLFREGITGLYRGMAAPIIGVTPMFAVCFFGFGLGKKLQQKHPEDVLSYPQLFAAGMLS
GVFTTGIMTPGERIKCLLQIQASSGESKYTGTLDCAKKLYQEFGIRGIYKGTVLTLMRDV
PASGMYFMTYEWLKNIFTPEGKRVSELSAPRILVAGGIAGIFNWAVAIPPDVLKSRFQTA
PPGKYPNGFRDVLRELIRDEGVTSLYKGFNAVMIRAFPANAACFLGFEVAMKFLNWATPN
L

>gi568815595r:48757713_48998794|GENSCAN_predicted_CDS_2|906_bp
atggccgaccagccaaaacccatcagcccgctcaagaacctgctggccggcggctttggc
ggcgtgtgcctggtgttcgtcggtcaccctctggacacggtcaaggtccgactgcagaca
cagccaccgagtttgcctggacaacctcccatgtactctgggacctttgactgtttccgg
aagactctttttagagagggcatcacggggctatatcggggaatggctgcccctatcatc
ggggtcactcccatgtttgccgtgtgcttctttgggtttggtttggggaagaaactacaa
cagaaacacccagaagatgtgctcagctatccccagctttttgcagctgggatgttatct
ggcgtattcaccacaggaatcatgactcctggagaacggatcaagtgcttattacagatt
caggcttcttcaggagaaagcaagtacactggtaccttggactgtgcaaagaagctgtac
caggagtttgggatccgaggcatctacaaagggactgtgcttacccttatgcgagatgtc
ccagctagtggaatgtatttcatgacatatgaatggctgaaaaatatcttcactccggag
ggaaagagggtcagtgagctcagtgcccctcggatcttggtggctgggggcattgcaggg
atcttcaactgggctgtggcaatccccccagatgtgctcaagtctcgattccagactgca
cctcctgggaaatatcctaatggtttcagagatgtgctgagggagctgatccgggatgaa
ggagtcacatccttgtacaaagggttcaatgcagtgatgatccgagccttcccagccaat
gcggcctgtttccttggctttgaagttgccatgaagttccttaattgggccacccccaac
ttgtga

>gi568815595r:48757713_48998794|GENSCAN_predicted_peptide_3|290_aa
MLGQRAGDGERPGLPGDGEGGVPARPGRRAERPPQRPAKVNKAVTCAAHLPGAAASRPLS
PNKPDRVRPGQRDRIGAKRQRRRRADAGQARAASSRRVVPTAPEVLGAVASLPDRGRPTV
ARVATGSRLEGLFSAASLKLSALTQSLTRVRQAPTASGATIRLPASPVEMFLTSAFLTGF
SFHCLYSGIGHGEDILASVEQITIVSRPLSGQRGAGPGNSAYTPRRSQGGPRAATTPGFR
FPCRGLVRRAVLRLTVTVQDCILTALLAVSFHSIGVVIMTSSYLLGPVVK

>gi568815595r:48757713_48998794|GENSCAN_predicted_CDS_3|873_bp
atgctcggacaacgtgccggcgacggggagcgcccgggcctcccgggcgacggcgaaggc
ggagtcccggcccggccagggaggcgcgcggagaggcccccccagcggccagccaaggta
aacaaggccgtgacgtgcgccgcgcacttaccgggagctgcggcctcgcggccgctgagc
ccgaacaagccagaccgggtcaggccgggccagagggaccggattggggcgaagcggcag
cggaggcggcgggccgacgccggtcaagcccgcgctgcttcctccagaagagtcgtcccc
acagctccggaagtgcttggcgccgttgcgtcacttccggatcggggtcgacccacggtc
gctcgggtcgcgacaggctcccggctagagggcctgtttagcgccgcctccttgaaactt
agcgctctgacccagagtctgaccagggtacggcaggcgccgaccgcgtctggagccact
attcgcctaccagcgtctcccgtcgagatgtttttaaccagcgcgtttctcaccggcttc
tcatttcactgtttgtactccgggatcgggcacggagaagacatcctggcgtcagtggag
cagataaccattgtttctcggccgctatctggtcagaggggagctgggccgggaaattct
gcctacaccccgaggcggtcgcagggtggccccagagccgcaaccacaccaggctttcgc
ttcccctgccgaggcctcgttcgccgcgcagttctccgacttacggtcaccgtgcaagat
tgcatcttaactgccttgcttgcagtttcttttcacagtataggagttgtcatcatgact
tccagttaccttctgggaccggttgtcaaatga

>gi568815595r:48757713_48998794|GENSCAN_predicted_peptide_4|820_aa
MSVDMNSQGSDSNEEDYDPNCEEEEEEEEDDPGDIEDYYVGVASDVEQQGADAFDPEEYQ
FTCLTYKESEGALNEHMTSLASVLKGRSLHIEDGSGQCIADWPLMLTAISCILPMALVSH
SVAKLILVNFHWQVSEILDRYKSNSAQLLVEARVQPNPSKHVPTSHPPHHCAVCMQFVRK
ENLLSLACQHQFCRSCWEQHCSVLVKDGVGVGVSCMAQDCPLRTPEDFVFPLLPNEELRE
KYRRYLFRDYVESHYQLQLCPGADCPMVIRVQEPRARRVQCNRCNEVFCFKCRQMYHAPT
DCATIRKWLTKCADDSETANYISAHTKDCPKCNICIEKNGGCNHMQCSKCKHDFCWMCLG
DWKTHGSEYYECSRYKENPDIVNQSQQAQAREALKKYLFYFERWENHNKSLQLEAQTYQR
IHEKIQERVMNNLGTWIDWQYLQNAAKLLAKCRYTLQYTYPYAYYMESGPRKKLFEYQQA
QLEAEIENLSWKVERADSYDRGVSAYCPLGFYIAGLPDSGETSREIRTDRGTELQECLRG
GCGSYPIAAYAVPASAAPPNAALLSHLSAASSALRSPPPLLEQEDADDTFPGGKRASSRR
HREAPTSVCLNVTAALAGLAAVVRATAQRGHPRGPSPGRARDLGAMAAAAVTGQRPETAA
AEEASRPQWAPPDHCQAQAAAGLGDGEDAPVRPLCKPRGICSRAYFLVLMVFVHLYLGNV
LALLLFVHYSNGDESSDPGPQHRAQGPGPEPTLGPLTRLEGIKVGHERKVQLVTDRDHFI
RTLSLKPLLFVILNGQAGPKKSGPAIDSAPSAMLFLDLNL

>gi568815595r:48757713_48998794|GENSCAN_predicted_CDS_4|2463_bp
atgtcagtggacatgaatagccaggggtctgacagcaatgaagaggactatgacccaaat
tgtgaggaagaggaagaagaagaagaagacgaccctggggacatagaggactattacgtg
ggagtagccagcgatgtggagcagcagggggctgatgcctttgatcccgaggagtaccag
ttcacttgcttgacctacaaggaatctgagggtgccctcaatgagcacatgaccagctta
gcttctgtcctaaagggtaggagcctacacattgaggatggttctgggcaatgtattgct
gactggccgttgatgctcactgccatcagctgcatcctccctatggcactggtatctcat
tcagttgctaaacttatattagttaatttccactggcaagtttcagagatattggacaga
tacaagtccaattctgctcaactgcttgttgaggctcgagttcagcctaatccatcaaaa
catgttcccacatcccatccccctcaccactgtgcagtgtgtatgcagtttgtgcgaaag
gaaaacctactctctctggcctgtcagcaccagttttgccgcagctgctgggagcagcac
tgctcagttctcgtcaaggacggcgtgggcgtgggagtctcttgcatggctcaggactgt
ccactccgtacaccagaggactttgtgtttccattgcttcccaatgaagaattgagagag
aaatacaggcgctacctcttcagggactatgtggagagtcattaccagctccagctgtgc
cctggtgcagactgccccatggttattcgggtacaggagcctagagctcgccgagtacag
tgcaatcggtgcaacgaggtcttctgtttcaagtgtcgtcagatgtatcacgcacccaca
gactgtgccacaatccggaaatggctcacgaagtgtgcagacgactctgaaacagccaac
tacattagtgctcacactaaagactgtcccaagtgcaacatctgcattgagaagaatgga
ggctgcaatcacatgcaatgctccaaatgtaaacacgacttctgctggatgtgtctagga
gattggaagactcatggcagtgaatactatgagtgcagtcgttacaaggagaatcctgac
atcgtgaaccagagccaacaagcccaggcgagggaagccctcaagaagtacttattctac
tttgagaggtgggaaaaccacaataaaagcttgcagctagaggcacagacataccagcgg
attcacgagaagattcaggagagggtcatgaacaatctggggacatggatcgactggcag
tacctacagaatgctgccaagctcttggccaagtgtcgatacaccctgcaatacacctac
ccatatgcatattacatggagtccggacccaggaagaagctgtttgaataccagcaggct
cagctggaggctgagatcgaaaacctctcatggaaagtggagcgtgcagacagctatgac
agaggggtaagtgcctactgtcctcttggattctatattgcaggcctgcctgactccggc
gagacttcccgggagatccggaccgaccgcggaaccgagctccaagaatgcctgcgagga
ggctgtgggtcctaccctatcgccgcttacgcagtcccagcctccgcggcgcccccaaat
gccgcactgttgagtcatctcagcgctgcctcctccgcgctgcgctccccacccccgctc
ctggagcaagaagatgcagacgatacttttcccggaggcaagagggcgtcttcacgcagg
caccgagaagctcccactagtgtatgccttaatgtgaccgcggcgctcgcgggcctggcg
gccgttgtccgggcgactgcgcagcgcgggcacccccgcggcccctcccctgggcgcgcg
cgcgacctgggtgccatggcggcagcggcggtgacaggccagcggcctgagaccgcggcg
gccgaggaggcctcgaggccgcagtgggcgccgccagaccactgccaggctcaggcggcg
gccgggctgggcgacggcgaggacgcaccggtgcgtccgctgtgcaagccccgcggcatc
tgctcgcgcgcctacttcctggtgctgatggtgttcgtgcacctgtacctgggtaacgtg
ctggcgctgctgctcttcgtgcactacagcaacggcgacgaaagcagcgatcccgggccc
caacaccgtgcccagggccccgggcccgagcccaccttaggtcccctcacccggctggag
ggcatcaaggtggggcacgagcgtaaggtccagctggtcaccgacagggatcacttcatc
cgaaccctcagcctcaagccgctgctcttcgttattctaaatgggcaagcagggcccaag
aagagtggacctgctatagattctgccccctctgccatgctgttcttggatctaaacctg
tga

>gi568815595r:48757713_48998794|GENSCAN_predicted_peptide_5|163_aa
XVIYPSYSLCEAMQASCEPIMACYSYPWPAILHCGRFPLGHDLCITAVANNGSRLDRPSV
KVRFSRTNSTSSGPWDCNLYSRLEVLKTGPLPPAELEPTLQRWLQLDVTCVYNLFRGRHT
GTYVLSGKMEACWLLVTTAYAWSQGHQNFRLAVRHWHPHQCQE

>gi568815595r:48757713_48998794|GENSCAN_predicted_CDS_5|492_bp
nnggtcatctacccctcctacagcctgtgcgaggccatgcaggccagctgcgagcccatc
atggcctgctacagctacccctggccagccatcctgcattgtggacgcttccccttgggc
catgatctctgtatcactgctgtggccaacaacggctcccgcctggaccgcccatcagtg
aaggtcaggttctccaggaccaacagtacttcctctggcccctgggactgcaacctgtac
tccagactagaggtgctgaagacaggaccactgccccctgcagagctggagcccaccctg
caacgctggctgcagctggatgtcacatgtgtgtacaatctttttcgaggaaggcacaca
gggacctatgtgttgagtgggaagatggaggcctgctggctgttggtaaccacggcctat
gcctggagccagggccaccaaaattttcgactggctgtgcgccattggcaccctcaccag
tgccaagaatag