Result of FASTA (omim) for pF1KB3692
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3692, 128 aa
  1>>>pF1KB3692 128 - 128 aa - 128 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2798+/-0.000329; mu= 11.0839+/- 0.020
 mean_var=74.4435+/-14.904, 0's: 0 Z-trim(116.7): 35  B-trim: 0 in 0/50
 Lambda= 0.148649
 statistics sampled from 28030 (28065) to 28030 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.712), E-opt: 0.2 (0.329), width:  16
 Scan time:  4.850

The best scores are:                                      opt bits E(85289)
NP_976074 (OMIM: 107271,612300) CD59 glycoprotein  ( 128)  907 203.1   1e-52
NP_001120699 (OMIM: 107271,612300) CD59 glycoprote ( 128)  907 203.1   1e-52
NP_001120698 (OMIM: 107271,612300) CD59 glycoprote ( 128)  907 203.1   1e-52
NP_001120695 (OMIM: 107271,612300) CD59 glycoprote ( 128)  907 203.1   1e-52
NP_976075 (OMIM: 107271,612300) CD59 glycoprotein  ( 128)  907 203.1   1e-52
NP_000602 (OMIM: 107271,612300) CD59 glycoprotein  ( 128)  907 203.1   1e-52
NP_001120697 (OMIM: 107271,612300) CD59 glycoprote ( 128)  907 203.1   1e-52
NP_976076 (OMIM: 107271,612300) CD59 glycoprotein  ( 128)  907 203.1   1e-52
NP_065160 (OMIM: 248300,606119) secreted Ly-6/uPAR ( 103)  140 38.5  0.0028
NP_803430 (OMIM: 606110) ly-6/neurotoxin-like prot ( 116)  139 38.3  0.0036
NP_803429 (OMIM: 606110) ly-6/neurotoxin-like prot ( 116)  139 38.3  0.0036
NP_803252 (OMIM: 606110) ly-6/neurotoxin-like prot ( 116)  139 38.3  0.0036


>>NP_976074 (OMIM: 107271,612300) CD59 glycoprotein prep  (128 aa)
 initn: 907 init1: 907 opt: 907  Z-score: 1067.3  bits: 203.1 E(85289): 1e-52
Smith-Waterman score: 907; 100.0% identity (100.0% similar) in 128 aa overlap (1-128:1-128)

               10        20        30        40        50        60
pF1KB3 MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKAGLQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_976 MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKAGLQV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 YNKCWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLENGGTSLSEKTVLLLVTPFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_976 YNKCWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLENGGTSLSEKTVLLLVTPFL
               70        80        90       100       110       120

               
pF1KB3 AAAWSLHP
       ::::::::
NP_976 AAAWSLHP
               

>>NP_001120699 (OMIM: 107271,612300) CD59 glycoprotein p  (128 aa)
 initn: 907 init1: 907 opt: 907  Z-score: 1067.3  bits: 203.1 E(85289): 1e-52
Smith-Waterman score: 907; 100.0% identity (100.0% similar) in 128 aa overlap (1-128:1-128)

               10        20        30        40        50        60
pF1KB3 MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKAGLQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKAGLQV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 YNKCWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLENGGTSLSEKTVLLLVTPFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YNKCWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLENGGTSLSEKTVLLLVTPFL
               70        80        90       100       110       120

               
pF1KB3 AAAWSLHP
       ::::::::
NP_001 AAAWSLHP
               

>>NP_001120698 (OMIM: 107271,612300) CD59 glycoprotein p  (128 aa)
 initn: 907 init1: 907 opt: 907  Z-score: 1067.3  bits: 203.1 E(85289): 1e-52
Smith-Waterman score: 907; 100.0% identity (100.0% similar) in 128 aa overlap (1-128:1-128)

               10        20        30        40        50        60
pF1KB3 MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKAGLQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKAGLQV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 YNKCWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLENGGTSLSEKTVLLLVTPFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YNKCWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLENGGTSLSEKTVLLLVTPFL
               70        80        90       100       110       120

               
pF1KB3 AAAWSLHP
       ::::::::
NP_001 AAAWSLHP
               

>>NP_001120695 (OMIM: 107271,612300) CD59 glycoprotein p  (128 aa)
 initn: 907 init1: 907 opt: 907  Z-score: 1067.3  bits: 203.1 E(85289): 1e-52
Smith-Waterman score: 907; 100.0% identity (100.0% similar) in 128 aa overlap (1-128:1-128)

               10        20        30        40        50        60
pF1KB3 MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKAGLQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKAGLQV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 YNKCWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLENGGTSLSEKTVLLLVTPFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YNKCWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLENGGTSLSEKTVLLLVTPFL
               70        80        90       100       110       120

               
pF1KB3 AAAWSLHP
       ::::::::
NP_001 AAAWSLHP
               

>>NP_976075 (OMIM: 107271,612300) CD59 glycoprotein prep  (128 aa)
 initn: 907 init1: 907 opt: 907  Z-score: 1067.3  bits: 203.1 E(85289): 1e-52
Smith-Waterman score: 907; 100.0% identity (100.0% similar) in 128 aa overlap (1-128:1-128)

               10        20        30        40        50        60
pF1KB3 MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKAGLQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_976 MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKAGLQV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 YNKCWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLENGGTSLSEKTVLLLVTPFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_976 YNKCWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLENGGTSLSEKTVLLLVTPFL
               70        80        90       100       110       120

               
pF1KB3 AAAWSLHP
       ::::::::
NP_976 AAAWSLHP
               

>>NP_000602 (OMIM: 107271,612300) CD59 glycoprotein prep  (128 aa)
 initn: 907 init1: 907 opt: 907  Z-score: 1067.3  bits: 203.1 E(85289): 1e-52
Smith-Waterman score: 907; 100.0% identity (100.0% similar) in 128 aa overlap (1-128:1-128)

               10        20        30        40        50        60
pF1KB3 MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKAGLQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKAGLQV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 YNKCWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLENGGTSLSEKTVLLLVTPFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 YNKCWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLENGGTSLSEKTVLLLVTPFL
               70        80        90       100       110       120

               
pF1KB3 AAAWSLHP
       ::::::::
NP_000 AAAWSLHP
               

>>NP_001120697 (OMIM: 107271,612300) CD59 glycoprotein p  (128 aa)
 initn: 907 init1: 907 opt: 907  Z-score: 1067.3  bits: 203.1 E(85289): 1e-52
Smith-Waterman score: 907; 100.0% identity (100.0% similar) in 128 aa overlap (1-128:1-128)

               10        20        30        40        50        60
pF1KB3 MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKAGLQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKAGLQV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 YNKCWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLENGGTSLSEKTVLLLVTPFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YNKCWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLENGGTSLSEKTVLLLVTPFL
               70        80        90       100       110       120

               
pF1KB3 AAAWSLHP
       ::::::::
NP_001 AAAWSLHP
               

>>NP_976076 (OMIM: 107271,612300) CD59 glycoprotein prep  (128 aa)
 initn: 907 init1: 907 opt: 907  Z-score: 1067.3  bits: 203.1 E(85289): 1e-52
Smith-Waterman score: 907; 100.0% identity (100.0% similar) in 128 aa overlap (1-128:1-128)

               10        20        30        40        50        60
pF1KB3 MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKAGLQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_976 MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKAGLQV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 YNKCWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLENGGTSLSEKTVLLLVTPFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_976 YNKCWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLENGGTSLSEKTVLLLVTPFL
               70        80        90       100       110       120

               
pF1KB3 AAAWSLHP
       ::::::::
NP_976 AAAWSLHP
               

>>NP_065160 (OMIM: 248300,606119) secreted Ly-6/uPAR-rel  (103 aa)
 initn: 128 init1:  71 opt: 140  Z-score: 179.7  bits: 38.5 E(85289): 0.0028
Smith-Waterman score: 141; 31.2% identity (59.1% similar) in 93 aa overlap (12-95:9-100)

               10        20        30          40        50        
pF1KB3 MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNP--TADCKTAVNCSSDFDACLITKAGL
                  :::: :     :..:.::.: .:  .:.:.: . :. .  ::. : . .
NP_065    MASRWAVQLLLVAAWSMGCGEALKCYTCKEPMTSASCRTITRCKPEDTACMTTLVTV
                  10        20        30        40        50       

       60            70           80        90       100       110 
pF1KB3 QV---YNKCWKFEH-CNFNDVTT---RLRENELTYYCCKKDLCNFNEQLENGGTSLSEKT
       ..   .:.     . :. . :.:    .   .: . :: .::::                
NP_065 EAEYPFNQSPVVTRSCSSSCVATDPDSIGAAHLIF-CCFRDLCNSEL             
        60        70        80        90        100                

             120        
pF1KB3 VLLLVTPFLAAAWSLHP

>>NP_803430 (OMIM: 606110) ly-6/neurotoxin-like protein   (116 aa)
 initn: 134 init1:  60 opt: 139  Z-score: 177.8  bits: 38.3 E(85289): 0.0036
Smith-Waterman score: 139; 26.0% identity (52.8% similar) in 123 aa overlap (9-126:4-115)

               10        20        30        40        50          
pF1KB3 MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKAG---
               :. :.::. .    ...:.:. :     .: . . : .    :. :..    
NP_803      MTPLLTLILVVLMGLPLAQALDCHVCAYNGDNCFNPMRCPAMVAYCMTTRTYYTP
                    10        20        30        40        50     

          60        70        80        90       100       110     
pF1KB3 --LQVYNKCWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLENGGTSLSEKTVLLL
         ..: ..:    .: :. :     ..  :  ::. ::::        ::.:.  ..: :
NP_803 TRMKVSKSC--VPRC-FETVYDGYSKHASTTSCCQYDLCN--------GTGLATPATLAL
          60           70        80        90               100    

         120        
pF1KB3 VTPFLAAAWSLHP
       .  .::. :.:  
NP_803 APILLATLWGLL 
          110       




128 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 05:19:35 2016 done: Sat Nov  5 05:19:36 2016
 Total Scan time:  4.850 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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