GENSCAN 1.0	Date run:  8-Nov-116	Time: 09:30:49

Sequence gi568815575r:15727328_15952524 : 225197 bp : 40.86% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.05 PlyA -    510    505    6                               1.05
 1.04 Term -  10680  10556  125  1  2   85   42   104 0.680   3.07
 1.03 Intr -  11420  11229  192  0  0   62   23   155 0.642   4.94
 1.02 Intr -  13313  13207  107  1  2    0   94   112 0.076   1.94
 1.01 Init -  17401  17181  221  1  2   68   26   179 0.030   7.85
 1.00 Prom -  20682  20643   40                              -4.95

 2.00 Prom +  21251  21290   40                              -9.05
 2.01 Init +  21539  21588   50  1  2   98   52    60 0.058   3.87
 2.02 Intr +  22743  22838   96  0  0   13   76   147 0.023   4.21
 2.03 Intr +  29026  29147  122  1  2    3   60   147 0.334   2.62
 2.04 Intr +  37251  37448  198  1  0   78   94   201 0.775  18.10
 2.05 Intr +  45169  45287  119  2  2   51   87   132 0.612   8.66
 2.06 Intr +  46975  47070   96  0  0   75   93    72 0.701   5.69
 2.07 Intr +  47919  47981   63  2  0  103   74    45 0.858   2.60
 2.08 Intr +  49387  49542  156  0  0   89   91   120 0.997  11.69
 2.09 Term +  55158  55337  180  2  0   94   41   192 0.990  11.73
 2.10 PlyA +  56306  56311    6                               1.05

 3.00 Prom +  60290  60329   40                              -3.75
 3.01 Init +  63169  63209   41  0  2  102  121    39 0.468   8.31
 3.02 Intr +  63607  63686   80  1  2   51   64   172 0.917   9.38
 3.03 Intr +  72545  72626   82  0  1   66   78   145 0.992   9.08
 3.04 Intr +  76361  76469  109  2  1   36   64   138 0.993   5.57
 3.05 Intr +  76784  76870   87  1  0   65   45   135 0.102   6.15
 3.06 Intr +  82874  82948   75  1  0   24   95    78 0.050   0.89
 3.07 Intr +  85754  85875  122  1  2   29   85    73 0.569  -0.53
 3.08 Intr +  88350  88563  214  0  1   73   86   178 0.601  13.90
 3.09 Term +  95404  96015  612  0  0   81   46   407 0.853  29.29
 3.10 PlyA +  96795  96800    6                               1.05

 4.08 PlyA -  96886  96881    6                               1.05
 4.07 Term - 104735 104698   38  0  2  107   38    41 0.356  -2.48
 4.06 Intr - 117921 117738  184  0  1   32   92   108 0.749   4.04
 4.05 Intr - 118189 118052  138  1  0  142   99    86 0.999  14.84
 4.04 Intr - 118684 118576  109  0  1   86   65    74 0.948   4.27
 4.03 Intr - 125197 125019  179  1  2   78   70    77 0.369   2.70
 4.02 Intr - 127850 127628  223  1  1   34   12   172 0.386   1.41
 4.01 Init - 132779 132700   80  2  2   83   75    40 0.409   2.78
 4.00 Prom - 132956 132917   40                              -3.65

 5.03 PlyA - 134781 134776    6                               1.05
 5.02 Term - 146661 146522  140  1  2   76   38   105 0.852   1.44
 5.01 Init - 148543 148420  124  1  1   86   70    70 0.698   5.38
 5.00 Prom - 149136 149097   40                              -3.45

 6.07 PlyA - 149313 149308    6                              -0.45
 6.06 Term - 150114 149895  220  2  1   55   42   131 0.511   0.73
 6.05 Intr - 152434 152151  284  1  2   47   76   162 0.025   6.19
 6.04 Intr - 153731 153664   68  0  2   96   91    85 0.013   7.31
 6.03 Intr - 164679 164522  158  2  2   99   68    43 0.036   2.13
 6.02 Intr - 173940 173748  193  1  1   78   76    51 0.007   0.53
 6.01 Init - 174458 173969  490  2  1   53    1   307 0.018  13.91
 6.00 Prom - 175314 175275   40                              -4.55

 7.00 Prom + 180369 180408   40                              -7.65
 7.01 Init + 183673 183707   35  0  2   79   40    27 0.255  -3.31
 7.02 Term + 185600 185747  148  2  1   29   50   259 0.818  12.59
 7.03 PlyA + 186220 186225    6                               1.05

 8.03 PlyA - 187309 187304    6                               1.05
 8.02 Term - 201168 200920  249  0  0  113   39   166 0.893   8.92
 8.01 Init - 206409 206377   33  0  0   44  106    23 0.375  -0.38
 8.00 Prom - 206541 206502   40                              -6.55

 9.00 Prom + 206569 206608   40                              -6.95
 9.01 Init + 214110 214142   33  2  0   54  116     3 0.433  -0.29
 9.02 Term + 220344 220607  264  2  0   91   50   210 0.749  12.02
 9.03 PlyA + 221951 221956    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init -  13273  13207   67  1  1   98   94    44 0.851   7.29
S.002 Sngl -  17401  17063  339  1  0   68   47   209 0.869  10.58
S.003 Term +  76784  76900  117  1  0   65   45   168 0.881   7.76
S.004 Intr - 153089 152914  176  1  2   19   55   185 0.960   6.96
S.005 Sngl - 174458 173925  534  2  0   53   54   292 0.966  18.12


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815575r:15727328_15952524|GENSCAN_predicted_peptide_1|214_aa
MDRGTFRDDEEVAGDDEAPMLKRTIGVKMGRTLGLLNKQFQYQGDVGKQVEKASFLAHNR
VRMRHSNFWEDDGNSYRYIKGDSQKGAMKDAETENGQRQSRKAQSLEDPAISQKAGLSGV
IWIQPTLATLPTKELLSRAPTPFSLEQLLSRPVQRTLKDDSRLVTPIVEEEGWAWATPLS
PALAPPPPDQSSLLLLAAGRISGLKLDLGLQSLI

>gi568815575r:15727328_15952524|GENSCAN_predicted_CDS_1|645_bp
atggacaggggaaccttccgcgatgatgaggaggtggcaggggatgatgaggccccaatg
ctgaagagaacaattggagtcaaaatgggaagaactttaggtttactcaataaacaattc
cagtatcagggggatgtgggcaaacaagtggaaaaggcctcctttcttgctcacaatcga
gttagaatgagacatagtaatttttgggaagatgatggcaacagttacaggtatatcaag
ggagactcacaaaaaggagccatgaaggatgctgagactgagaacggtcaaaggcaatca
aggaaggcgcagagcttggaagatccagctatttcacagaaggctggactttctggagtt
atttggattcaaccaaccttggcaaccctacctaccaaggaactgctctcccgcgccccc
acccccttttctctggaacagctgttatcgcgtcctgtgcaaagaaccttaaaggatgac
agccgtttggtaactcccatagtggaggaagagggctgggcctgggccacgcctctgagc
cctgctctggccccgcccccgccggaccaatcctccctcctcctgctcgccgctggccgc
attagtggattgaaactagacctggggcttcagagccttatctaa

>gi568815575r:15727328_15952524|GENSCAN_predicted_peptide_2|359_aa
MVKPYLYEKYKKEPLHRQIAVEKVPDSEIHASEALQPLYLYLQNPEPSLKALETIEKVED
TDLMGLELTQALWADKANTDYLRNGWMLNVHPLWESVDLVPGGDRQSPINIRWRDSVYDP
GLKPLTISYDPATCLHVWNNGYSFLVEFEDSTDKSVIKGGPLEHNYRLKQFHFHWGAIDA
WGSEHTVDSKCFPAELHLVHWNAVRFENFEDAALEENGLAVIGVFLKLGKHHKELQKLVD
TLPSIKHKDALVEFGSFDPSCLMPTCPDYWTYSGSLTTPPLSESVTWIIKKQPVEVDHDQ
LEQFRTLLFTSEGEKEKRMVDNFRPLQPLMNRTVRSSFRHDYVLNVQAKPKPATSQATP

>gi568815575r:15727328_15952524|GENSCAN_predicted_CDS_2|1080_bp
atggtaaaaccctatctctatgaaaaatacaaaaaagagcctctgcacaggcaaattgct
gtggagaaagttccagattccgagattcatgccagcgaggccctgcagcctctatacttg
tacttacaaaacccggaaccgagccttaaagccctggagactatagaaaaagtggaggac
acagacctcatgggcttggagttgacacaggccctttgggcagataaagcaaacacagat
tacctgaggaatggttggatgctaaatgtgcatccactctgggagagcgtggacctggtt
cctgggggcgatcgccagtcacccatcaacattcggtggagggacagtgtttatgatccc
ggcttaaaaccactgaccatctcttatgacccagccacctgcctccacgtctggaataat
gggtactctttcctcgtggaatttgaagattctacagataaatcagtgatcaagggagga
cccctggaacacaactaccgattgaagcagttccattttcactggggggccatcgatgcc
tggggttctgagcacaccgtggacagcaaatgcttcccagcagagctgcacttagtgcat
tggaacgcagtcagatttgaaaactttgaggatgcagcactggaagaaaatggtttggct
gtgataggagtatttttaaagctaggcaaacatcataaggagctacagaaattagtggat
actttgccgtcaattaagcataaggacgcccttgtggaatttgggtcatttgacccttcc
tgcctgatgcctacctgcccagattactggacctactcagggtctctgactaccccaccc
ctctccgagtctgtcacctggatcattaagaagcaaccagtagaggttgatcatgatcag
cttgagcaatttcggaccctgcttttcacttccgaaggggagaaagagaaaagaatggtg
gacaacttccgcccccttcagccactgatgaatcgcactgttcgttcatccttccggcat
gattatgtgctgaatgtacaagcgaaacccaagccggccaccagccaagcaaccccctaa

>gi568815575r:15727328_15952524|GENSCAN_predicted_peptide_3|473_aa
MAAPEKMTFPEKPSHKKYRAALKKEKRKKRRQELARLRDSGLSQKEEEEDTFIEEQQLEE
EKLLERERQRLHEEWLLREQKAQEEFRIKKEKEEAAKKRQEEQERKLKEQWEEQQRKERE
EEEQKRQEKKEKEKTFMWKPSVDLFSHLASLRTPIICQDKGNAYQEHFPEKKKKRSSQLA
IPEGAFGYPHHLLAILGLRCSRKHNFPTSSPTLLIKSMFTTFGMEQCRRDDYDPDASLEY
SEEETYQQFLDFYEDVLPEFKNVGKVIQFKVYLKYNNVQEESTATFFMCSEIPTMNSGKL
IETSTCLQIGLAPPLGRTPKGGRGWATTTTTTAGCGEGETLVQTTPTKEMGNPRGKVVVT
GGRNLTNAHQRVGRGTIHEAEEEIGTAAGTAAGAGAAGAGAGAGAAGAAAAGAKVPLGPE
VVAGGGRVIETELFRVPNPNKLVLFLNDCISYLLWLLHTRIEGYERRWVRKSG

>gi568815575r:15727328_15952524|GENSCAN_predicted_CDS_3|1422_bp
atggctgcgcccgagaagatgacgtttcccgagaaaccaagccacaaaaagtacagggcc
gccctgaagaaggagaaacgaaagaaacgtcggcaggaacttgctcgactgagagactca
ggactctcacagaaggaggaagaggaggacacttttattgaagaacaacaactagaagaa
gagaagctattggaaagagagaggcaaagattacatgaggagtggttgctaagagagcag
aaggcacaagaagaattcagaataaagaaggaaaaggaagaggcggctaaaaaacggcaa
gaagaacaagagagaaagttaaaggaacaatgggaagaacagcagaggaaagagagagaa
gaggaggagcagaaacgacaggagaagaaagaaaaagagaagacgttcatgtggaaacct
agtgttgatctcttcagtcatttagcaagtcttcgaacacctattatatgccaggacaaa
ggtaatgcgtaccaggagcacttccctgagaagaagaaaaagaggagtagtcagttagct
atacccgagggggcatttggatacccacaccatttattggccatccttggcctaagatgt
tcacgtaaacataatttcccaacatccagtcctacccttcttattaagagcatgtttacg
acgtttggaatggagcagtgcaggagggatgactatgaccctgacgcaagcctggagtac
agcgaggaagaaacctaccaacagttcctagacttctatgaggatgtgttgcccgagttc
aagaacgtggggaaagtgattcagttcaaggtttatttgaaatacaacaatgtccaagag
gaaagcactgcaactttcttcatgtgttcagaaatcccaacaatgaattctgggaagcta
atagagacatctacttgtctccagatcggactggctcctcctttgggaagaactccgaaa
ggagggagaggatgggccaccacgacgactactacagcaggctgcggggaaggagaaacc
ctagtccagaccactcctacaaaagaaatggggaatccgagaggaaaagtagtcgtcaca
gggggaagaaatctcacaaacgcacatcaaagagtcgggagaggcacaattcacgaagca
gaggaagaaatagggaccgcagcagggaccgcagccggggccggggcagccggagccgga
gccggagccggagccgcaggagccgccgcagccggagccaaagttcctctaggtcccgaa
gtcgtggcaggaggaggtcgggtaatagagacagaactgttcagagtcccaaatccaaat
aaactagttttgttcttaaatgattgtatatcttatttattatggttgctacatactcgg
atagaaggctatgaacgcagatgggttcgcaagtctggctga

>gi568815575r:15727328_15952524|GENSCAN_predicted_peptide_4|316_aa
MDEAGNHDSQQTIARTKNQTLHVLTHRLRTLQNPVLLSLNKQDSRPRASRRHLQERAGAR
ALGPGKRRFRVTWPGFRFAPPLSEETSNRLPWTQRLPALPPMQFMLLFSRQGKLRLQKWY
VPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKRYASLYFCCAIEDQDNELIT
LEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGGEVQETSKKNVLKAIEQADL
LQEFIDWNMCQSRQLSYLWMDGSVWRWSIGQASSQWPFLDPKTLESKPLEDRLFEEGKRL
AESSSISKRLKTFIAT

>gi568815575r:15727328_15952524|GENSCAN_predicted_CDS_4|951_bp
atggatgaagctggaaaccatgattctcagcagactattgcaaggacaaaaaaccaaaca
ctgcatgttctcactcacaggctaaggacgctgcagaatcccgtcctcctatcattaaac
aagcaggacagccgcccgcgcgcgtcccggaggcacctgcaagagcgcgcgggcgcgcgg
gcgctcgggcccggcaaacgccgcttccgggtcacgtggcccggcttccggttcgcacct
cccctcagcgaagaaacctccaatcggctgccttggactcagcggttacccgcgctgcct
ccgatgcagtttatgttgctttttagtcgtcagggaaagcttcgactgcaaaaatggtat
gtcccactatcagacaaagagaagaaaaagatcacaagagaacttgttcagaccgtttta
gcacggaaacctaaaatgtgcagcttccttgagtggcgagatctgaagattgtttacaaa
agatatgctagtctgtatttttgctgtgctattgaggatcaggacaatgaactaattacc
ctggaaataattcatcgttatgtggaattacttgacaagtatttcggcagtgtctgtgaa
ctagatatcatctttaattttgagaaggcttattttattttggatgagtttcttttggga
ggggaagttcaggaaacatccaagaaaaatgtccttaaagcaattgagcaggctgatcta
ctgcaggagtttattgactggaatatgtgtcagtcacgtcaactcagttatctatggatg
gatggttcagtttggagatggtctatcggtcaggcctcttcccaatggccctttttggac
cctaaaacactggagtctaaacctttagaggacagactatttgaagaagggaaaagattg
gctgaaagtagcagtataagtaaacggttaaaaaccttcattgctacttaa

>gi568815575r:15727328_15952524|GENSCAN_predicted_peptide_5|87_aa
MQSMPVHPVHKDTKSLPNALEKTAHCLYHITLINKPNIISEGDGVCGQEDKKGENKAGSS
AAMPFVQSLHYFCLQMATVLKKAAKSD

>gi568815575r:15727328_15952524|GENSCAN_predicted_CDS_5|264_bp
atgcagagcatgcctgtccatcctgtccacaaggataccaagtccttgccaaatgcgttg
gagaaaactgcacactgtttgtaccacattactttgatcaacaagcctaacatcatcagt
gaaggtgatggagtatgtggtcaagaagacaaaaagggggaaaacaaggcagggagctca
gcagctatgccgtttgtacaaagccttcattatttctgcttgcagatggccacagtactt
aagaaagctgccaagtcagattaa

>gi568815575r:15727328_15952524|GENSCAN_predicted_peptide_6|470_aa
MWKTLELPRDLLNGFAQNANSDNSDMDNKVQAEVVSDENEECVGNWSKGDSCYVLAKRLL
AFCSCPRDLWNCGLERDDLGYLVEEISKQQSIQEVTWMLLKAFSFIREAKHKSSENLQPV
NAIEKKIPFSEERFKLAAEICINNEELNVNPQDNGKMSPGHVRGLEAYEAKWFHGPSPAL
PAVCSLKTWCPASQPVQPWLKGANVELGLWLQRVEAPSLGSFHMVLSLHVKCQLPFSFCH
DYKFPETSPEAKQMPESCFLYSLRNHEPIKPPFFTNGPVSGKNAEQLLRSLESLSSPKDD
KDVPMDLVLCVPASAAVAKKGHGTAWAMASEGASPEPWQLPCGIGPVGAWKSRIEVWELP
PRFQRMYGNAWMSRQKFSARAGPSWRTSVRPVQKGNVGLPIHTVSFLISDFTVETPLKVQ
LTSAPERKLVLNAPGRRSASSSGRMDAGKPTLLAGFRQQDVPLTKRPFFL

>gi568815575r:15727328_15952524|GENSCAN_predicted_CDS_6|1413_bp
atgtggaaaactttggaacttcctagagacttgttgaatggctttgcccaaaatgctaac
agtgataacagtgatatggacaataaagtccaggctgaagtggtctcagatgaaaatgag
gaatgtgttgggaactggagcaaaggtgactcttgttatgttttagcaaagagactgctg
gcattttgctcctgccctagagatttgtggaactgtggacttgagagagatgatttaggg
tatctggtggaagaaatttccaagcagcaaagcattcaagaggtgacttggatgctgtta
aaggcattcagttttataagagaagcaaagcataaaagttcagaaaatttgcagcctgtc
aatgctatagaaaagaaaatcccattttctgaggagagattcaagctggctgcagaaatt
tgcataaataacgaggagctgaatgttaatccccaagacaatggaaaaatgtctccaggg
catgtcagaggcctggaggcctatgaggcaaagtggtttcatgggcccagcccagcactc
cctgctgtgtgtagcctaaagacttggtgccctgcatcccagccagtccagccatggctg
aaaggagctaatgtagagcttgggctgtggcttcagagggtggaagccccaagccttggc
agcttccacatggtgttgagcctccatgtgaagtgtcagctccccttctccttctgccat
gattataagtttcctgagacctccccagaagccaaacagatgccagaatcatgcttcctg
tacagcctgcggaaccatgagccaattaaacctcctttctttacaaatggcccagtctca
ggtaagaatgctgagcaactcctcagaagtttggagagcctttcaagtcctaaagatgac
aaagatgtgcctatggacttggtgctctgtgtcccagcctctgcagctgtggctaaaaag
ggccacggtacagcttgggccatggcttcagagggtgcaagccccgagccttggcagctt
ccatgtggtattgggcctgtgggtgcatggaagtcaagaattgaggtttgggaacttcca
cctagatttcagaggatgtatggaaatgcctggatgtccaggcagaagttttctgcaagg
gcagggccttcatggagaacctctgttaggccagtgcaaaagggaaatgtaggcctacct
attcatacagtgtcttttctaatctctgatttcactgtagaaaccccacttaaggtccag
ttaacttctgcccctgaaaggaagcttgtgcttaatgcccctggaagaaggtctgccagc
tcttcaggccgaatggatgctgggaagccaactctcctggcaggcttccgacagcaagat
gttcctctaaccaagaggcccttcttcctctga

>gi568815575r:15727328_15952524|GENSCAN_predicted_peptide_7|60_aa
MVPWDREAVPQWTFNYLDGDDDDNSGNFGGGDNVNGGDDADVAGDDDGQERDKEESLIYG

>gi568815575r:15727328_15952524|GENSCAN_predicted_CDS_7|183_bp
atggttccctgggaccgggaagctgtgccacagtggacgtttaactatctggatggagat
gatgatgataatagtggtaattttggaggaggtgacaatgttaatggtggtgatgatgct
gatgttgctggtgatgatgatggccaagaaagagataaagaagaaagtcttatttatggt
tga

>gi568815575r:15727328_15952524|GENSCAN_predicted_peptide_8|93_aa
MSQEESTQQRKCTSDLYIAESMAKSPLPVSKQQHLAQPINSSPCYMVFTRFPEPYPLLVF
PSHWLDLLSALWMVPLRSLESMLAVSSSLSHPE

>gi568815575r:15727328_15952524|GENSCAN_predicted_CDS_8|282_bp
atgtctcaggaagaatcaacacagcaaagaaaatgcactagtgatctttacattgctgaa
tctatggccaaatctcctcttcccgtgagcaaacagcagcatttggcacaacccataaac
tcttctccctgctacatggtcttcactcggtttccagaaccctaccctctattggttttc
ccatctcactggttggatcttctcagtgctctttggatggttcctcttcgttccctggaa
tcaatgctggctgtctcttcttctctgtcacaccctgaatga

>gi568815575r:15727328_15952524|GENSCAN_predicted_peptide_9|98_aa
MHHENLCAVRKATALHFSLVIKEDEQDHALGKAIQGNEAGMQSESRRKCSQQQGGGKEWP
GTRRGLSQQETTKADCGSKPSPLFVKRIHNKAWTPTDK

>gi568815575r:15727328_15952524|GENSCAN_predicted_CDS_9|297_bp
atgcaccatgaaaacctgtgtgctgtgagaaaggcaacagccttgcatttcagtctggta
attaaggaggatgagcaggatcatgctttgggcaaagcaatacaagggaatgaagcagga
atgcaaagtgagtcccggaggaagtgtagccagcagcagggtggagggaaggagtggcct
ggaaccaggaggggattgagtcagcaggaaacaaccaaggcagattgtgggagtaagcct
tcccctttgtttgtgaagaggattcacaacaaagcctggactcctactgataagtga