Result of GENSCAN for pF1KE1460
GENSCAN 1.0	Date run:  7-Nov-116	Time: 02:59:11

Sequence gi568815578r:33989733_34205497 : 215765 bp : 44.44% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   2904   3030  127  2  1   68   76    65 0.498   3.55
 1.02 Intr +   7072   7126   55  2  1  135  103    47 0.613   8.94
 1.03 Term +  10365  10470  106  0  1   52   49    68 0.161  -2.82
 1.04 PlyA +  10493  10498    6                               1.05

 2.00 Prom +  11330  11369   40                              -2.56
 2.01 Init +  13785  13824   40  2  1   93   79    33 0.348   3.25
 2.02 Intr +  23296  23408  113  2  2   64  102     1 0.008  -0.80
 2.03 Intr +  27705  27773   69  2  0  108   79     1 0.019   0.58
 2.04 Intr +  69671  69734   64  1  1   81   92    51 0.434   3.09
 2.05 Term +  71491  71507   17  2  2  130   43    22 0.403   0.30
 2.06 PlyA +  74265  74270    6                               1.05

 3.00 Prom +  76127  76166   40                              -1.36
 3.01 Init +  82199  82210   12  1  0   73   96     5 0.565   0.01
 3.02 Intr +  82334  82598  265  1  1  105   94   360 0.632  35.39
 3.03 Intr +  83831  83903   73  0  1   82   75     8 0.998  -2.64
 3.04 Intr +  84087  84134   48  0  0  113   99   183 0.999  19.70
 3.05 Intr +  86142  86308  167  0  2   96   65   211 0.999  19.20
 3.06 Intr +  86970  87083  114  1  0   83   76   190 0.997  17.72
 3.07 Intr +  87296  87513  218  0  2   82   81   274 0.999  24.32
 3.08 Intr +  90178  90340  163  0  1  110   49   120 0.962   9.85
 3.09 Term +  91452  91507   56  1  2   76   44    45 0.284  -3.38
 3.10 PlyA +  93431  93436    6                               1.05

 4.10 PlyA -  93444  93439    6                               1.05
 4.09 Term - 100173  99998  176  1  2   87   28   139 0.945   5.72
 4.08 Intr - 100870 100785   86  0  2   64   89    10 0.811  -1.84
 4.07 Intr - 103999 103943   57  0  0   87  116    14 0.670   2.10
 4.06 Intr - 107073 106925  149  0  2   75   93   124 0.975  10.63
 4.05 Intr - 107784 107684  101  1  2   78   94    48 0.982   4.23
 4.04 Intr - 108901 108766  136  1  1   63   90   164 0.975  14.24
 4.03 Intr - 113833 113730  104  2  2  100   62   111 0.604   9.59
 4.02 Intr - 115813 115636  178  1  1   85  100   203 0.840  20.69
 4.01 Init - 117574 117530   45  1  0   81   87    -2 0.329  -0.32
 4.00 Prom - 119292 119253   40                              -6.76

 5.00 Prom + 121631 121670   40                              -8.36
 5.01 Sngl + 121872 122666  795  2  0   42   48   355 0.975  22.79
 5.02 PlyA + 124422 124427    6                               1.05

 6.00 Prom + 130407 130446   40                              -1.86
 6.01 Init + 132738 132792   55  2  1   81    7   113 0.869   3.95
 6.02 Intr + 132897 133329  433  1  1   -5   32   375 0.743  15.30
 6.03 Term + 133354 133558  205  1  1   19   46   249 0.969  10.64
 6.04 PlyA + 136041 136046    6                               1.05

 7.00 Prom + 145170 145209   40                              -2.76
 7.01 Init + 170229 170320   92  2  2   95   96    59 0.833   7.36
 7.02 Term + 184509 184647  139  0  1  100   44    89 0.904   3.14
 7.03 PlyA + 184720 184725    6                               1.05

 8.04 PlyA - 185668 185663    6                               1.05
 8.03 Term - 185740 185684   57  1  0  104   40    36 0.008  -1.91
 8.02 Intr - 201756 201684   73  2  1   62   99    70 0.653   4.91
 8.01 Init - 207026 206971   56  2  2   76   80    84 0.753   7.16
 8.00 Prom - 207280 207241   40                              -5.66

 9.00 Prom + 210389 210428   40                              -3.76
 9.01 Init + 215380 215392   13  0  1   94  113     2 0.313   3.27
 9.02 Intr + 215606 215731  126  0  0   54  109    76 0.371   6.95

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815578r:33989733_34205497|GENSCAN_predicted_peptide_1|95_aa
GREVIKQQKDNYNCWYGKARTLNSNSAPFSGIPSVKQVLGKRSPENYRSTFCEFDYSRNL
IWKGENDSRNVNLLVLQLPPGYCKEIVLRVQLTDP

>gi568815578r:33989733_34205497|GENSCAN_predicted_CDS_1|288_bp
ggcagggaggtcatcaaacaacagaaggacaattataactgctggtatggcaaagccagg
actctgaattcaaactctgctccattctcaggaatcccgtctgttaagcaggttctgggg
aagcgatcccctgaaaactatcgttctactttctgtgaatttgactactctaggaacctc
atctggaagggagaaaatgacagccgtaatgttaacctgcttgtcctacaacttccccct
gggtactgtaaggaaattgtgctcagggtgcagctcacagacccttag

>gi568815578r:33989733_34205497|GENSCAN_predicted_peptide_2|100_aa
MEQKTGGELFSGNIKYSINYVRYSTLYYKIGFVLVDFAHLKASVNVLRIFKTERELRLSP
WSCSKTGGNSLKPVEDLQQLSILGVFLSMLTWHMSGCSMT

>gi568815578r:33989733_34205497|GENSCAN_predicted_CDS_2|303_bp
atggagcaaaagactggaggtgaactgttcagcgggaacataaagtattcaataaattat
gtgagatattcaacactgtattataaaataggctttgtgttagttgattttgctcacctg
aaggctagtgttaatgttctgcgcatattcaagactgaacgggagctcaggctgtctccc
tggagctgttcaaagactggaggaaattctttaaaacctgtggaagacctgcagcagctg
tccatcctgggagtattcctgtctatgcttacgtggcacatgtcaggatgtagcatgacg
tag

>gi568815578r:33989733_34205497|GENSCAN_predicted_peptide_3|371_aa
MQEQVGTMSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV
HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEPKPDRPKGLKRAASAIYSGYI
FDYDYYRDDFYDRLFDYRGRLSPVPVPRAVPVKRPRVTVPLVRRVKTNVPVKLFARSTAV
TTSSAKIKLKSSELQAIKTELTQIKSNIDALLSRLEQIAAEQKANPDGKKKGDGGGAGGG
GGGGGSGGGGSGGGGGGGSSRPPAPQENTTSEAGLPQGEARTRDDGDEEGLLTHSEEELP
DRSNGHQQVKGIAAPGLKPGTQPWMPPPSGYQRKAGSRRLLPQRIPASAMSSAGYKYLPW
SSELRDSYVAT

>gi568815578r:33989733_34205497|GENSCAN_predicted_CDS_3|1116_bp
atgcaggaacaggtgggcaccatgtccttgaagcttcaggcaagcaatgtaaccaacaag
aatgaccccaagtccatcaactctcgagtcttcattggaaacctcaacacagctctggtg
aagaaatcagatgtggagaccatcttctctaagtatggccgtgtggccggctgttctgtg
cacaagggctatgcctttgttcagtactccaatgagcgccatgcccgggcagctgtgctg
ggagagaatgggcgggtgctggccgggcagaccctggacatcaacatggctggagagcct
aagcctgacagacccaaggggctaaagagagcagcatctgccatatacagtggctacatc
tttgactatgattactaccgggacgacttctacgacaggctcttcgactaccggggccgt
ctgtcgcccgtgccagtgcccagggcggtccctgtgaagcgaccccgggtcacagtccct
ttggtccggcgtgtcaaaactaacgtacctgtcaagctctttgcccgctccacagctgtc
accaccagctcagccaagatcaagttaaagagcagtgagctgcaggccatcaagacggag
ctgacacagatcaagtccaatatcgatgccctgctgagccgcttggagcagatcgctgcg
gagcaaaaggccaatccagatggcaagaagaagggtgatggaggtggcgccggcggcggc
ggcggtggtggtggcagcggtggcggtggcagtggtggtggcggtggcggtggcagcagc
cggccaccagccccccaagagaacacaacttctgaggcaggcctgccccagggggaagca
cggacccgagacgacggcgatgaggaagggctcctgacacacagcgaggaagagctgcct
gacaggagcaatggccaccagcaggtgaagggcatcgctgccccaggcctcaagccgggc
acccaaccctggatgccaccccccagcgggtaccagaggaaagctggcagcaggcgcctc
ctcccccaacgcatcccagccagtgccatgtcctctgcaggttacaagtacctaccctgg
tccagtgaactgcgggattcatatgtggccacttag

>gi568815578r:33989733_34205497|GENSCAN_predicted_peptide_4|343_aa
MLNLSMVLIEYGERLMIFDPTMSKKKKKKKKPFMLDEEGDTQTEETQPSETKEVEPEPTE
DKDLEADEEDTRKKDASDDLDDLNFFNQKKKKKKTKKIFDIDEAEEGVKDLKIESDVQEP
TEPEDDLDIMLGNKKKKKKNVKFPDEDEILEKDEALEDEDNKKDDGISFSNQTGPAWAGS
ERDYTYEELLNRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLH
RQPKHLLAFLLAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTI
LQKDTRLYFLQCETCHSRCSVASIKTGFQAVTGKRAQLRAKAN

>gi568815578r:33989733_34205497|GENSCAN_predicted_CDS_4|1032_bp
atgctgaatttaagcatggtattaatagaatatggagagagattgatgatttttgatcct
actatgagcaagaagaaaaagaagaagaagaagccttttatgttagatgaggaaggggat
acccaaacagaggaaacccagccttcagaaacaaaagaagtggagccagagccaactgag
gacaaggatttggaagctgatgaagaggacactaggaaaaaagatgcttctgatgatcta
gatgacttgaacttctttaatcaaaagaaaaagaagaaaaaaactaaaaagatatttgat
attgatgaagctgaagaaggtgtaaaggatcttaagattgaaagtgatgttcaagaacca
actgaaccagaggatgaccttgacattatgcttggcaataaaaagaagaaaaagaagaat
gttaagttcccagatgaggatgaaatactagagaaagatgaagctctagaagatgaagac
aacaaaaaagatgatggtatctcattcagtaatcagacaggccctgcttgggcaggctca
gaaagagactacacatacgaggagctgctgaatcgagtgttcaacatcatgagggaaaag
aatccagatatggttgctggggagaaaaggaaatttgtcatgaaacctccacaagtcgtc
cgagtaggaaccaagaaaacttcttttgtcaactttacagatatctgtaaactattacat
cgtcagcccaaacatctccttgcatttttgttggctgaattgggtacaagtggttctata
gatggtaataaccaacttgtaatcaaaggaagattccaacagaaacagatagaaaatgtc
ttgagaagatatatcaaggaatatgtcacttgtcacacatgccgatcaccggacacaatc
ctgcagaaggacacacgactctatttcctacagtgcgaaacttgtcattctagatgttct
gttgccagtatcaaaaccggcttccaggctgtcacgggcaagcgagcacagctccgtgcc
aaagctaactaa

>gi568815578r:33989733_34205497|GENSCAN_predicted_peptide_5|264_aa
MLGRQTRAGYRPRQDSLESFNEGVIPSQERLLAAPLAPPAPSEASWGGSAQQKGMQGSPA
PVSFGVINRAFEPLPGGRLNVCSPFRKRQPRQEVRLSAAALRKAGCGQACGSGVLAGSAA
PGRLGAAASHGGGRLLGRRPVLPHWSGLGFSPQSLALTPGSDPHLVPRHGCGSSGLGTDG
KSDGSAPGPGGSAAPADTSPTTALGSCISERKRHPALSSKRWKCACAELAKAQARRRANL
ARFVWRELPGDAASPGMPGLVVHL

>gi568815578r:33989733_34205497|GENSCAN_predicted_CDS_5|795_bp
atgctaggaaggcaaacaagggcgggataccggccccgacaagatagcctagaaagtttt
aacgagggcgttataccaagccaagagaggctcctcgcggcacccctggcacccccggca
cccagtgaggcgagctggggcggcagtgcccagcagaaaggaatgcagggatcgccagcc
ccagtctcgttcggggttattaaccgggcattcgagccccttccgggaggacgactcaac
gtgtgctctccattccggaaacgccaaccacggcaggaggtccgcctcagcgctgccgcc
ctgaggaaagcgggctgcggccaagcctgcggctccggagtcctcgccggctctgccgct
ccgggccgcctaggcgcggctgcctcacatggcggcggccggctgctaggccgcaggccc
gttctcccacactggagtgggttaggcttctcgcctcaatccttagcccttacgccgggc
tcagatcctcacctcgtccccagacatggctgcggctcgagtgggctcggcacggacggg
aagtcagacgggtcagccccaggccccggcggcagcgctgcccctgccgatacctctccc
accaccgcactaggctcttgcatcagcgaaaggaaacgacaccccgccctctcctccaag
cgttggaaatgcgcctgcgcagagctcgccaaggcgcaggcgcgcagaagagccaaccta
gcgcgcttcgtgtggcgcgagttaccaggcgacgccgcgtcgccaggcatgccgggactt
gtagtccatttataa

>gi568815578r:33989733_34205497|GENSCAN_predicted_peptide_6|230_aa
MGNRGGFRGGFGGGIRGQGHEDQVPGGCLFSLPIKESETIDFFLGSSLKEEGLKIMPVQK
QTRAGQRTRFKAFVATGDYNGHVGLCVKCSKEVATAIRGSVILTKHSIVPVRRGYGGTRW
TSPHRPLQGDRPLRLCAGAPHPCTQGHWHRLRTCAQEAPHDGCQGLHCHPGNFAKATFDT
ISKTYSYLTLDLWKETIFTKSPYQEFTDHLVKTHTRVSMQRTQAPAVATA

>gi568815578r:33989733_34205497|GENSCAN_predicted_CDS_6|693_bp
atggggaaccgcggtggcttccgcggaggtttcggcggtggcatccggggccagggacat
gaagatcaagtacctggaggatgtctcttctccctgcccatcaaggaatctgagaccatt
gacttttttctggggtcctctctcaaggaagagggtttgaagattatgccggtgcagaag
cagacccgcgcgggccagcgcaccaggttcaaggcgtttgttgccaccggggactacaat
ggccacgtcggtctgtgcgttaagtgctccaaggaggtggctactgccatccgcgggtcc
gtcatcctgaccaagcactccattgtccccgtgcgcagaggctacgggggaacaagatgg
acaagcccacaccgtcccttgcaaggtgacaggccgctgcggctctgtgctggtgcacct
catccctgcacccaggggcactggcatcgtctccgcacctgtgcccaagaagctcctcat
gatggctgccaggggctgcactgccaccctggcaacttcgccaaggccacctttgacacc
atctctaagacctacagctacctgaccctcgacctctggaaggagactatattcaccaag
tctccctatcaggaattcactgaccacctcgtcaagacccacaccagagtctccatgcag
aggacccaggctccagctgtggctacagcatag

>gi568815578r:33989733_34205497|GENSCAN_predicted_peptide_7|76_aa
MKNLSQARTIIVPHSPGNSNWSKEQAYDPESPPPEISADQNRSLKKLPEAGESSTRKEQK
EQSSEYQPQQDKIHYV

>gi568815578r:33989733_34205497|GENSCAN_predicted_CDS_7|231_bp
atgaagaatttgtctcaggcccggacaatcatagttcctcattcccctggcaacagtaat
tggtccaaggagcaggcatatgacccagaaagtccccctcctgaaattagtgctgatcag
aacagaagtttgaagaaactacctgaggctggagaaagtagcaccagaaaagagcagaag
gaacaatcctcagagtaccagccccaacaagataaaattcactatgtctga

>gi568815578r:33989733_34205497|GENSCAN_predicted_peptide_8|61_aa
MQTSKGSREYFTPQNRLRRSCSRPPTDRWDQRAFNGDDSVLREPNTAVKKRQSVVFQELR
D

>gi568815578r:33989733_34205497|GENSCAN_predicted_CDS_8|186_bp
atgcagacctctaagggctctagggagtacttcacccctcagaaccggctacgcaggtcc
tgctccaggcctcccacagaccgctgggaccagagggccttcaatggggatgacagtgtg
ctcagggagcccaacactgcagtgaaaaagagacagtctgtcgtcttccaggagcttaga
gattag

>gi568815578r:33989733_34205497|GENSCAN_predicted_peptide_9|47_aa
MDPHGVKLQTFVVSVTAHRGGASGVVHSSRWARGLAGFRSEAADLLX

>gi568815578r:33989733_34205497|GENSCAN_predicted_CDS_9|141_bp
atggaccctcacggagtgaagctgcagaccttcgtggtgagtgttacagctcatagaggc
ggcgcatccggagttgttcattcctcccgctgggctcgtggtctcgctggcttcaggagt
gaagctgcagaccttctcgnn
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