Result of FASTA (omim) for pF1KB6833
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6833, 169 aa
  1>>>pF1KB6833 169 - 169 aa - 169 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8352+/-0.000308; mu= 14.5446+/- 0.019
 mean_var=55.7802+/-11.272, 0's: 0 Z-trim(116.3): 39  B-trim: 1410 in 1/52
 Lambda= 0.171725
 statistics sampled from 27274 (27313) to 27274 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.723), E-opt: 0.2 (0.32), width:  16
 Scan time:  5.430

The best scores are:                                      opt bits E(85289)
NP_002504 (OMIM: 601817) nucleoside diphosphate ki ( 169) 1138 289.5 1.8e-78
XP_005255389 (OMIM: 601817) PREDICTED: nucleoside  ( 165)  847 217.4 8.8e-57
NP_000260 (OMIM: 156490,256700) nucleoside diphosp ( 152)  726 187.4 8.7e-48
NP_937818 (OMIM: 156490,256700) nucleoside diphosp ( 177)  726 187.4 9.8e-48
NP_001018148 (OMIM: 156491) nucleoside diphosphate ( 152)  711 183.7 1.1e-46
NP_002503 (OMIM: 156491) nucleoside diphosphate ki ( 152)  711 183.7 1.1e-46
NP_001018147 (OMIM: 156491) nucleoside diphosphate ( 152)  711 183.7 1.1e-46
NP_001018149 (OMIM: 156491) nucleoside diphosphate ( 152)  711 183.7 1.1e-46
NP_005000 (OMIM: 601818) nucleoside diphosphate ki ( 187)  652 169.1 3.4e-42
XP_011520805 (OMIM: 601817) PREDICTED: nucleoside  ( 170)  624 162.1 3.8e-40
NP_001273364 (OMIM: 601818) nucleoside diphosphate ( 173)  504 132.4 3.5e-31
NP_001273368 (OMIM: 601818) nucleoside diphosphate ( 117)  479 126.1 1.8e-29
NP_001273367 (OMIM: 601818) nucleoside diphosphate ( 117)  479 126.1 1.8e-29
NP_001273369 (OMIM: 601818) nucleoside diphosphate ( 117)  479 126.1 1.8e-29
NP_001273365 (OMIM: 601818) nucleoside diphosphate ( 117)  479 126.1 1.8e-29
XP_011520806 (OMIM: 601817) PREDICTED: nucleoside  ( 136)  383 102.4   3e-22
NP_001185611 (OMIM: 156491) nucleoside diphosphate (  82)  356 95.5   2e-20
NP_001273362 (OMIM: 601818) nucleoside diphosphate ( 153)  312 84.8 6.5e-17
NP_001295356 (OMIM: 608294) nucleoside diphosphate ( 186)  251 69.7 2.7e-12
NP_001295357 (OMIM: 608294) nucleoside diphosphate ( 186)  251 69.7 2.7e-12
NP_001295355 (OMIM: 608294) nucleoside diphosphate ( 186)  251 69.7 2.7e-12
XP_016861003 (OMIM: 608294) PREDICTED: nucleoside  ( 186)  251 69.7 2.7e-12
XP_016861002 (OMIM: 608294) PREDICTED: nucleoside  ( 190)  251 69.7 2.8e-12
NP_005784 (OMIM: 608294) nucleoside diphosphate ki ( 194)  251 69.7 2.8e-12
NP_932076 (OMIM: 613465) nucleoside diphosphate ki ( 340)  250 69.6 5.3e-12
XP_016856588 (OMIM: 613465) PREDICTED: nucleoside  ( 367)  250 69.7 5.7e-12
NP_037462 (OMIM: 613465) nucleoside diphosphate ki ( 376)  250 69.7 5.8e-12
NP_001295363 (OMIM: 608294) nucleoside diphosphate ( 141)  213 60.3 1.5e-09
XP_005272156 (OMIM: 603575) PREDICTED: nucleoside  ( 148)  199 56.8 1.7e-08
XP_006714779 (OMIM: 603575) PREDICTED: nucleoside  ( 149)  199 56.8 1.7e-08
NP_003542 (OMIM: 603575) nucleoside diphosphate ki ( 212)  195 55.9 4.6e-08
XP_016865434 (OMIM: 603575) PREDICTED: nucleoside  ( 278)  195 56.0 5.7e-08
XP_016861007 (OMIM: 608294) PREDICTED: nucleoside  ( 111)  166 48.6 3.9e-06
XP_016861001 (OMIM: 608294) PREDICTED: nucleoside  ( 264)  162 47.8 1.6e-05
XP_016856589 (OMIM: 613465) PREDICTED: nucleoside  ( 252)  159 47.0 2.5e-05
XP_005245163 (OMIM: 613465) PREDICTED: nucleoside  ( 252)  159 47.0 2.5e-05
XP_016861006 (OMIM: 608294) PREDICTED: nucleoside  ( 114)  149 44.3 7.3e-05


>>NP_002504 (OMIM: 601817) nucleoside diphosphate kinase  (169 aa)
 initn: 1138 init1: 1138 opt: 1138  Z-score: 1529.9  bits: 289.5 E(85289): 1.8e-78
Smith-Waterman score: 1138; 100.0% identity (100.0% similar) in 169 aa overlap (1-169:1-169)

               10        20        30        40        50        60
pF1KB6 MICLVLTIFANLFPAACTGAHERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MICLVLTIFANLFPAACTGAHERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 SEELLREHYAELRERPFYGRLVKYMASGPVVAMVWQGLDVVRTSRALIGATNPADAPPGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 SEELLREHYAELRERPFYGRLVKYMASGPVVAMVWQGLDVVRTSRALIGATNPADAPPGT
               70        80        90       100       110       120

              130       140       150       160         
pF1KB6 IRGDFCIEVGKNLIHGSDSVESARREIALWFRADELLCWEDSAGHWLYE
       :::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 IRGDFCIEVGKNLIHGSDSVESARREIALWFRADELLCWEDSAGHWLYE
              130       140       150       160         

>>XP_005255389 (OMIM: 601817) PREDICTED: nucleoside diph  (165 aa)
 initn: 847 init1: 847 opt: 847  Z-score: 1140.4  bits: 217.4 E(85289): 8.8e-57
Smith-Waterman score: 847; 100.0% identity (100.0% similar) in 128 aa overlap (1-128:1-128)

               10        20        30        40        50        60
pF1KB6 MICLVLTIFANLFPAACTGAHERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MICLVLTIFANLFPAACTGAHERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 SEELLREHYAELRERPFYGRLVKYMASGPVVAMVWQGLDVVRTSRALIGATNPADAPPGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SEELLREHYAELRERPFYGRLVKYMASGPVVAMVWQGLDVVRTSRALIGATNPADAPPGT
               70        80        90       100       110       120

              130       140       150       160         
pF1KB6 IRGDFCIEVGKNLIHGSDSVESARREIALWFRADELLCWEDSAGHWLYE
       ::::::::                                         
XP_005 IRGDFCIEEPDSRQRLGGECPPRDRSLVPRRRAPLLGGQRWALAV    
              130       140       150       160         

>>NP_000260 (OMIM: 156490,256700) nucleoside diphosphate  (152 aa)
 initn: 726 init1: 726 opt: 726  Z-score: 978.9  bits: 187.4 E(85289): 8.7e-48
Smith-Waterman score: 726; 67.6% identity (93.2% similar) in 148 aa overlap (22-169:5-152)

               10        20        30        40        50        60
pF1KB6 MICLVLTIFANLFPAACTGAHERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQA
                            ::::.:.::::::: :::::..:::.:::.::.::..::
NP_000                  MANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQA
                                10        20        30        40   

               70        80        90       100       110       120
pF1KB6 SEELLREHYAELRERPFYGRLVKYMASGPVVAMVWQGLDVVRTSRALIGATNPADAPPGT
       ::.::.:::..:..:::.. ::::: :::::::::.::.::.:.:...: :::::. :::
NP_000 SEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGT
            50        60        70        80        90       100   

              130       140       150       160         
pF1KB6 IRGDFCIEVGKNLIHGSDSVESARREIALWFRADELLCWEDSAGHWLYE
       :::::::.::.:.::::::::::..::.:::. .::. . . : .:.::
NP_000 IRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE
           110       120       130       140       150  

>>NP_937818 (OMIM: 156490,256700) nucleoside diphosphate  (177 aa)
 initn: 726 init1: 726 opt: 726  Z-score: 978.0  bits: 187.4 E(85289): 9.8e-48
Smith-Waterman score: 726; 67.6% identity (93.2% similar) in 148 aa overlap (22-169:30-177)

                       10        20        30        40        50  
pF1KB6         MICLVLTIFANLFPAACTGAHERTFLAVKPDGVQRRLVGEIVRRFERKGFKL
                                    ::::.:.::::::: :::::..:::.:::.:
NP_937 MVLLSTLGIVFQGEGPPISSCDTGTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRL
               10        20        30        40        50        60

             60        70        80        90       100       110  
pF1KB6 VALKLVQASEELLREHYAELRERPFYGRLVKYMASGPVVAMVWQGLDVVRTSRALIGATN
       :.::..::::.::.:::..:..:::.. ::::: :::::::::.::.::.:.:...: ::
NP_937 VGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETN
               70        80        90       100       110       120

            120       130       140       150       160         
pF1KB6 PADAPPGTIRGDFCIEVGKNLIHGSDSVESARREIALWFRADELLCWEDSAGHWLYE
       :::. ::::::::::.::.:.::::::::::..::.:::. .::. . . : .:.::
NP_937 PADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE
              130       140       150       160       170       

>>NP_001018148 (OMIM: 156491) nucleoside diphosphate kin  (152 aa)
 initn: 711 init1: 711 opt: 711  Z-score: 958.9  bits: 183.7 E(85289): 1.1e-46
Smith-Waterman score: 711; 65.5% identity (91.2% similar) in 148 aa overlap (22-169:5-152)

               10        20        30        40        50        60
pF1KB6 MICLVLTIFANLFPAACTGAHERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQA
                            ::::.:.::::::: :::::..:::.:::.:::.:...:
NP_001                  MANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRA
                                10        20        30        40   

               70        80        90       100       110       120
pF1KB6 SEELLREHYAELRERPFYGRLVKYMASGPVVAMVWQGLDVVRTSRALIGATNPADAPPGT
       ::: :..:: .:..:::.  ::::: :::::::::.::.::.:.:...: :::::. :::
NP_001 SEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGT
            50        60        70        80        90       100   

              130       140       150       160         
pF1KB6 IRGDFCIEVGKNLIHGSDSVESARREIALWFRADELLCWEDSAGHWLYE
       :::::::.::.:.:::::::.::..::.:::. .::. ... :  :.::
NP_001 IRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPEELVDYKSCAHDWVYE
           110       120       130       140       150  

>>NP_002503 (OMIM: 156491) nucleoside diphosphate kinase  (152 aa)
 initn: 711 init1: 711 opt: 711  Z-score: 958.9  bits: 183.7 E(85289): 1.1e-46
Smith-Waterman score: 711; 65.5% identity (91.2% similar) in 148 aa overlap (22-169:5-152)

               10        20        30        40        50        60
pF1KB6 MICLVLTIFANLFPAACTGAHERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQA
                            ::::.:.::::::: :::::..:::.:::.:::.:...:
NP_002                  MANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRA
                                10        20        30        40   

               70        80        90       100       110       120
pF1KB6 SEELLREHYAELRERPFYGRLVKYMASGPVVAMVWQGLDVVRTSRALIGATNPADAPPGT
       ::: :..:: .:..:::.  ::::: :::::::::.::.::.:.:...: :::::. :::
NP_002 SEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGT
            50        60        70        80        90       100   

              130       140       150       160         
pF1KB6 IRGDFCIEVGKNLIHGSDSVESARREIALWFRADELLCWEDSAGHWLYE
       :::::::.::.:.:::::::.::..::.:::. .::. ... :  :.::
NP_002 IRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPEELVDYKSCAHDWVYE
           110       120       130       140       150  

>>NP_001018147 (OMIM: 156491) nucleoside diphosphate kin  (152 aa)
 initn: 711 init1: 711 opt: 711  Z-score: 958.9  bits: 183.7 E(85289): 1.1e-46
Smith-Waterman score: 711; 65.5% identity (91.2% similar) in 148 aa overlap (22-169:5-152)

               10        20        30        40        50        60
pF1KB6 MICLVLTIFANLFPAACTGAHERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQA
                            ::::.:.::::::: :::::..:::.:::.:::.:...:
NP_001                  MANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRA
                                10        20        30        40   

               70        80        90       100       110       120
pF1KB6 SEELLREHYAELRERPFYGRLVKYMASGPVVAMVWQGLDVVRTSRALIGATNPADAPPGT
       ::: :..:: .:..:::.  ::::: :::::::::.::.::.:.:...: :::::. :::
NP_001 SEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGT
            50        60        70        80        90       100   

              130       140       150       160         
pF1KB6 IRGDFCIEVGKNLIHGSDSVESARREIALWFRADELLCWEDSAGHWLYE
       :::::::.::.:.:::::::.::..::.:::. .::. ... :  :.::
NP_001 IRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPEELVDYKSCAHDWVYE
           110       120       130       140       150  

>>NP_001018149 (OMIM: 156491) nucleoside diphosphate kin  (152 aa)
 initn: 711 init1: 711 opt: 711  Z-score: 958.9  bits: 183.7 E(85289): 1.1e-46
Smith-Waterman score: 711; 65.5% identity (91.2% similar) in 148 aa overlap (22-169:5-152)

               10        20        30        40        50        60
pF1KB6 MICLVLTIFANLFPAACTGAHERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQA
                            ::::.:.::::::: :::::..:::.:::.:::.:...:
NP_001                  MANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRA
                                10        20        30        40   

               70        80        90       100       110       120
pF1KB6 SEELLREHYAELRERPFYGRLVKYMASGPVVAMVWQGLDVVRTSRALIGATNPADAPPGT
       ::: :..:: .:..:::.  ::::: :::::::::.::.::.:.:...: :::::. :::
NP_001 SEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGT
            50        60        70        80        90       100   

              130       140       150       160         
pF1KB6 IRGDFCIEVGKNLIHGSDSVESARREIALWFRADELLCWEDSAGHWLYE
       :::::::.::.:.:::::::.::..::.:::. .::. ... :  :.::
NP_001 IRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPEELVDYKSCAHDWVYE
           110       120       130       140       150  

>>NP_005000 (OMIM: 601818) nucleoside diphosphate kinase  (187 aa)
 initn: 683 init1: 652 opt: 652  Z-score: 878.5  bits: 169.1 E(85289): 3.4e-42
Smith-Waterman score: 652; 61.8% identity (88.9% similar) in 144 aa overlap (22-165:38-181)

                        10        20        30        40        50 
pF1KB6          MICLVLTIFANLFPAACTGAHERTFLAVKPDGVQRRLVGEIVRRFERKGFK
                                     :::..:::::::::::::....::::.:: 
NP_005 SALRGLRCGPRAPGPSLLVRHGSGGPSWTRERTLVAVKPDGVQRRLVGDVIQRFERRGFT
        10        20        30        40        50        60       

              60        70        80        90       100       110 
pF1KB6 LVALKLVQASEELLREHYAELRERPFYGRLVKYMASGPVVAMVWQGLDVVRTSRALIGAT
       ::..:..:: : .: ::: .::..:::  :..::.:::::::::.: .:::.:::.:: :
NP_005 LVGMKMLQAPESVLAEHYQDLRRKPFYPALIRYMSSGPVVAMVWEGYNVVRASRAMIGHT
        70        80        90       100       110       120       

             120       130       140       150       160           
pF1KB6 NPADAPPGTIRGDFCIEVGKNLIHGSDSVESARREIALWFRADELLCWEDSAGHWLYE  
       . :.: :::::::: .....:.::.:::::.:.::: :::...::. : :.. :      
NP_005 DSAEAAPGTIRGDFSVHISRNVIHASDSVEGAQREIQLWFQSSELVSWADGGQHSSIHPA
       130       140       150       160       170       180       

>>XP_011520805 (OMIM: 601817) PREDICTED: nucleoside diph  (170 aa)
 initn: 668 init1: 383 opt: 624  Z-score: 841.7  bits: 162.1 E(85289): 3.8e-40
Smith-Waterman score: 624; 62.6% identity (71.8% similar) in 174 aa overlap (1-169:1-170)

               10        20        30        40        50        60
pF1KB6 MICLVLTIFANLFPAACTGAHERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQA
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.
XP_011 MICLVLTIFANLFPAACTGAHERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQV
               10        20        30        40        50        60

               70        80          90          100       110     
pF1KB6 SEELLREHYAELRERPFYGRLVKYMAS--GPVVAMVWQGLD---VVRTSRALIGATNPAD
       . .  :   .        .: .  ..:   :     : :      .  .:.    : :. 
XP_011 GARPPRSCCVSTTPSCVNARSTAALSSIWPPGRWWPWYGRGWTWCAPRGRSSEPRTRPTP
               70        80        90       100       110       120

         120       130       140       150       160         
pF1KB6 APPGTIRGDFCIEVGKNLIHGSDSVESARREIALWFRADELLCWEDSAGHWLYE
        :  .  :   : ...::::::::::::::::::::::::::::::::::::::
XP_011 RPAPSA-G---ISASRNLIHGSDSVESARREIALWFRADELLCWEDSAGHWLYE
                  130       140       150       160       170




169 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 14:09:52 2016 done: Sat Nov  5 14:09:53 2016
 Total Scan time:  5.430 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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