Result of FASTA (ccds) for pF1KB6833
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6833, 169 aa
  1>>>pF1KB6833 169 - 169 aa - 169 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8386+/-0.00066; mu= 14.3871+/- 0.040
 mean_var=54.0415+/-10.655, 0's: 0 Z-trim(109.5): 19  B-trim: 55 in 1/49
 Lambda= 0.174466
 statistics sampled from 10902 (10919) to 10902 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.742), E-opt: 0.2 (0.335), width:  16
 Scan time:  1.930

The best scores are:                                      opt bits E(32554)
CCDS10443.1 NME3 gene_id:4832|Hs108|chr16          ( 169) 1138 293.8 3.4e-80
CCDS11579.1 NME1 gene_id:4830|Hs108|chr17          ( 152)  726 190.1 5.1e-49
CCDS11578.1 NME1 gene_id:4830|Hs108|chr17          ( 177)  726 190.1 5.8e-49
CCDS11580.1 NME2 gene_id:4831|Hs108|chr17          ( 152)  711 186.3   7e-48
CCDS32682.1 NME2 gene_id:654364|Hs108|chr17        ( 267)  711 186.4 1.1e-47
CCDS10408.1 NME4 gene_id:4833|Hs108|chr16          ( 187)  652 171.5 2.5e-43
CCDS66886.1 NME4 gene_id:4833|Hs108|chr16          ( 117)  479 127.8 2.1e-30
CCDS74107.1 NME2 gene_id:4831|Hs108|chr17          (  82)  356 96.8 3.3e-21
CCDS73797.1 NME4 gene_id:4833|Hs108|chr16          ( 153)  312 85.9 1.2e-17
CCDS77734.1 NME6 gene_id:10201|Hs108|chr3          ( 186)  251 70.5   6e-13
CCDS2763.1 NME6 gene_id:10201|Hs108|chr3           ( 194)  251 70.5 6.2e-13
CCDS44274.1 NME7 gene_id:29922|Hs108|chr1          ( 340)  250 70.4 1.2e-12
CCDS1277.1 NME7 gene_id:29922|Hs108|chr1           ( 376)  250 70.4 1.3e-12


>>CCDS10443.1 NME3 gene_id:4832|Hs108|chr16               (169 aa)
 initn: 1138 init1: 1138 opt: 1138  Z-score: 1553.2  bits: 293.8 E(32554): 3.4e-80
Smith-Waterman score: 1138; 100.0% identity (100.0% similar) in 169 aa overlap (1-169:1-169)

               10        20        30        40        50        60
pF1KB6 MICLVLTIFANLFPAACTGAHERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MICLVLTIFANLFPAACTGAHERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 SEELLREHYAELRERPFYGRLVKYMASGPVVAMVWQGLDVVRTSRALIGATNPADAPPGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SEELLREHYAELRERPFYGRLVKYMASGPVVAMVWQGLDVVRTSRALIGATNPADAPPGT
               70        80        90       100       110       120

              130       140       150       160         
pF1KB6 IRGDFCIEVGKNLIHGSDSVESARREIALWFRADELLCWEDSAGHWLYE
       :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 IRGDFCIEVGKNLIHGSDSVESARREIALWFRADELLCWEDSAGHWLYE
              130       140       150       160         

>>CCDS11579.1 NME1 gene_id:4830|Hs108|chr17               (152 aa)
 initn: 726 init1: 726 opt: 726  Z-score: 993.5  bits: 190.1 E(32554): 5.1e-49
Smith-Waterman score: 726; 67.6% identity (93.2% similar) in 148 aa overlap (22-169:5-152)

               10        20        30        40        50        60
pF1KB6 MICLVLTIFANLFPAACTGAHERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQA
                            ::::.:.::::::: :::::..:::.:::.::.::..::
CCDS11                  MANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQA
                                10        20        30        40   

               70        80        90       100       110       120
pF1KB6 SEELLREHYAELRERPFYGRLVKYMASGPVVAMVWQGLDVVRTSRALIGATNPADAPPGT
       ::.::.:::..:..:::.. ::::: :::::::::.::.::.:.:...: :::::. :::
CCDS11 SEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGT
            50        60        70        80        90       100   

              130       140       150       160         
pF1KB6 IRGDFCIEVGKNLIHGSDSVESARREIALWFRADELLCWEDSAGHWLYE
       :::::::.::.:.::::::::::..::.:::. .::. . . : .:.::
CCDS11 IRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE
           110       120       130       140       150  

>>CCDS11578.1 NME1 gene_id:4830|Hs108|chr17               (177 aa)
 initn: 726 init1: 726 opt: 726  Z-score: 992.5  bits: 190.1 E(32554): 5.8e-49
Smith-Waterman score: 726; 67.6% identity (93.2% similar) in 148 aa overlap (22-169:30-177)

                       10        20        30        40        50  
pF1KB6         MICLVLTIFANLFPAACTGAHERTFLAVKPDGVQRRLVGEIVRRFERKGFKL
                                    ::::.:.::::::: :::::..:::.:::.:
CCDS11 MVLLSTLGIVFQGEGPPISSCDTGTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRL
               10        20        30        40        50        60

             60        70        80        90       100       110  
pF1KB6 VALKLVQASEELLREHYAELRERPFYGRLVKYMASGPVVAMVWQGLDVVRTSRALIGATN
       :.::..::::.::.:::..:..:::.. ::::: :::::::::.::.::.:.:...: ::
CCDS11 VGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETN
               70        80        90       100       110       120

            120       130       140       150       160         
pF1KB6 PADAPPGTIRGDFCIEVGKNLIHGSDSVESARREIALWFRADELLCWEDSAGHWLYE
       :::. ::::::::::.::.:.::::::::::..::.:::. .::. . . : .:.::
CCDS11 PADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE
              130       140       150       160       170       

>>CCDS11580.1 NME2 gene_id:4831|Hs108|chr17               (152 aa)
 initn: 711 init1: 711 opt: 711  Z-score: 973.1  bits: 186.3 E(32554): 7e-48
Smith-Waterman score: 711; 65.5% identity (91.2% similar) in 148 aa overlap (22-169:5-152)

               10        20        30        40        50        60
pF1KB6 MICLVLTIFANLFPAACTGAHERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQA
                            ::::.:.::::::: :::::..:::.:::.:::.:...:
CCDS11                  MANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRA
                                10        20        30        40   

               70        80        90       100       110       120
pF1KB6 SEELLREHYAELRERPFYGRLVKYMASGPVVAMVWQGLDVVRTSRALIGATNPADAPPGT
       ::: :..:: .:..:::.  ::::: :::::::::.::.::.:.:...: :::::. :::
CCDS11 SEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGT
            50        60        70        80        90       100   

              130       140       150       160         
pF1KB6 IRGDFCIEVGKNLIHGSDSVESARREIALWFRADELLCWEDSAGHWLYE
       :::::::.::.:.:::::::.::..::.:::. .::. ... :  :.::
CCDS11 IRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPEELVDYKSCAHDWVYE
           110       120       130       140       150  

>>CCDS32682.1 NME2 gene_id:654364|Hs108|chr17             (267 aa)
 initn: 711 init1: 711 opt: 711  Z-score: 969.3  bits: 186.4 E(32554): 1.1e-47
Smith-Waterman score: 711; 65.5% identity (91.2% similar) in 148 aa overlap (22-169:120-267)

                        10        20        30        40        50 
pF1KB6          MICLVLTIFANLFPAACTGAHERTFLAVKPDGVQRRLVGEIVRRFERKGFK
                                     ::::.:.::::::: :::::..:::.:::.
CCDS32 MLGETNPADSKPGTIRGDFCIQVGRTMANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFR
      90       100       110       120       130       140         

              60        70        80        90       100       110 
pF1KB6 LVALKLVQASEELLREHYAELRERPFYGRLVKYMASGPVVAMVWQGLDVVRTSRALIGAT
       :::.:...:::: :..:: .:..:::.  ::::: :::::::::.::.::.:.:...: :
CCDS32 LVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGET
     150       160       170       180       190       200         

             120       130       140       150       160         
pF1KB6 NPADAPPGTIRGDFCIEVGKNLIHGSDSVESARREIALWFRADELLCWEDSAGHWLYE
       ::::. ::::::::::.::.:.:::::::.::..::.:::. .::. ... :  :.::
CCDS32 NPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPEELVDYKSCAHDWVYE
     210       220       230       240       250       260       

>--
 initn: 587 init1: 572 opt: 572  Z-score: 780.3  bits: 151.4 E(32554): 3.9e-37
Smith-Waterman score: 572; 69.6% identity (95.5% similar) in 112 aa overlap (22-133:5-116)

               10        20        30        40        50        60
pF1KB6 MICLVLTIFANLFPAACTGAHERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQA
                            ::::.:.::::::: :::::..:::.:::.::.::..::
CCDS32                  MANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQA
                                10        20        30        40   

               70        80        90       100       110       120
pF1KB6 SEELLREHYAELRERPFYGRLVKYMASGPVVAMVWQGLDVVRTSRALIGATNPADAPPGT
       ::.::.:::..:..:::.. ::::: :::::::::.::.::.:.:...: :::::. :::
CCDS32 SEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGT
            50        60        70        80        90       100   

              130       140       150       160                    
pF1KB6 IRGDFCIEVGKNLIHGSDSVESARREIALWFRADELLCWEDSAGHWLYE           
       :::::::.::...                                               
CCDS32 IRGDFCIQVGRTMANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHL
           110       120       130       140       150       160   

>>CCDS10408.1 NME4 gene_id:4833|Hs108|chr16               (187 aa)
 initn: 683 init1: 652 opt: 652  Z-score: 891.4  bits: 171.5 E(32554): 2.5e-43
Smith-Waterman score: 652; 61.8% identity (88.9% similar) in 144 aa overlap (22-165:38-181)

                        10        20        30        40        50 
pF1KB6          MICLVLTIFANLFPAACTGAHERTFLAVKPDGVQRRLVGEIVRRFERKGFK
                                     :::..:::::::::::::....::::.:: 
CCDS10 SALRGLRCGPRAPGPSLLVRHGSGGPSWTRERTLVAVKPDGVQRRLVGDVIQRFERRGFT
        10        20        30        40        50        60       

              60        70        80        90       100       110 
pF1KB6 LVALKLVQASEELLREHYAELRERPFYGRLVKYMASGPVVAMVWQGLDVVRTSRALIGAT
       ::..:..:: : .: ::: .::..:::  :..::.:::::::::.: .:::.:::.:: :
CCDS10 LVGMKMLQAPESVLAEHYQDLRRKPFYPALIRYMSSGPVVAMVWEGYNVVRASRAMIGHT
        70        80        90       100       110       120       

             120       130       140       150       160           
pF1KB6 NPADAPPGTIRGDFCIEVGKNLIHGSDSVESARREIALWFRADELLCWEDSAGHWLYE  
       . :.: :::::::: .....:.::.:::::.:.::: :::...::. : :.. :      
CCDS10 DSAEAAPGTIRGDFSVHISRNVIHASDSVEGAQREIQLWFQSSELVSWADGGQHSSIHPA
       130       140       150       160       170       180       

>>CCDS66886.1 NME4 gene_id:4833|Hs108|chr16               (117 aa)
 initn: 489 init1: 466 opt: 479  Z-score: 659.2  bits: 127.8 E(32554): 2.1e-30
Smith-Waterman score: 479; 58.6% identity (86.5% similar) in 111 aa overlap (55-165:1-111)

           30        40        50        60        70        80    
pF1KB6 FLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASEELLREHYAELRERPFYGRLVKY
                                     .:..:: : .: ::: .::..:::  :..:
CCDS66                               MKMLQAPESVLAEHYQDLRRKPFYPALIRY
                                             10        20        30

           90       100       110       120       130       140    
pF1KB6 MASGPVVAMVWQGLDVVRTSRALIGATNPADAPPGTIRGDFCIEVGKNLIHGSDSVESAR
       :.:::::::::.: .:::.:::.:: :. :.: :::::::: .....:.::.:::::.:.
CCDS66 MSSGPVVAMVWEGYNVVRASRAMIGHTDSAEAAPGTIRGDFSVHISRNVIHASDSVEGAQ
               40        50        60        70        80        90

          150       160           
pF1KB6 REIALWFRADELLCWEDSAGHWLYE  
       ::: :::...::. : :.. :      
CCDS66 REIQLWFQSSELVSWADGGQHSSIHPA
              100       110       

>>CCDS74107.1 NME2 gene_id:4831|Hs108|chr17               (82 aa)
 initn: 352 init1: 352 opt: 356  Z-score: 494.2  bits: 96.8 E(32554): 3.3e-21
Smith-Waterman score: 356; 66.7% identity (87.2% similar) in 78 aa overlap (22-96:5-82)

               10        20        30        40        50        60
pF1KB6 MICLVLTIFANLFPAACTGAHERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQA
                            ::::.:.::::::: :::::..:::.:::.:::.:...:
CCDS74                  MANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRA
                                10        20        30        40   

               70        80        90          100       110       
pF1KB6 SEELLREHYAELRERPFYGRLVKYMASGPVVAM---VWQGLDVVRTSRALIGATNPADAP
       ::: :..:: .:..:::.  ::::: :::::::    ::                     
CCDS74 SEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMEHHSWQ                     
            50        60        70        80                       

       120       130       140       150       160         
pF1KB6 PGTIRGDFCIEVGKNLIHGSDSVESARREIALWFRADELLCWEDSAGHWLYE

>>CCDS73797.1 NME4 gene_id:4833|Hs108|chr16               (153 aa)
 initn: 492 init1: 311 opt: 312  Z-score: 430.3  bits: 85.9 E(32554): 1.2e-17
Smith-Waterman score: 426; 47.2% identity (69.4% similar) in 144 aa overlap (22-165:38-147)

                        10        20        30        40        50 
pF1KB6          MICLVLTIFANLFPAACTGAHERTFLAVKPDGVQRRLVGEIVRRFERKGFK
                                     :::..:::::::::::::....::::.:: 
CCDS73 SALRGLRCGPRAPGPSLLVRHGSGGPSWTRERTLVAVKPDGVQRRLVGDVIQRFERRGFT
        10        20        30        40        50        60       

              60        70        80        90       100       110 
pF1KB6 LVALKLVQASEELLREHYAELRERPFYGRLVKYMASGPVVAMVWQGLDVVRTSRALIGAT
       ::..:..:                                  ::.: .:::.:::.:: :
CCDS73 LVGMKMLQ----------------------------------VWEGYNVVRASRAMIGHT
        70                                          80        90   

             120       130       140       150       160           
pF1KB6 NPADAPPGTIRGDFCIEVGKNLIHGSDSVESARREIALWFRADELLCWEDSAGHWLYE  
       . :.: :::::::: .....:.::.:::::.:.::: :::...::. : :.. :      
CCDS73 DSAEAAPGTIRGDFSVHISRNVIHASDSVEGAQREIQLWFQSSELVSWADGGQHSSIHPA
           100       110       120       130       140       150   

>>CCDS77734.1 NME6 gene_id:10201|Hs108|chr3               (186 aa)
 initn: 210 init1: 116 opt: 251  Z-score: 346.0  bits: 70.5 E(32554): 6e-13
Smith-Waterman score: 251; 37.5% identity (61.8% similar) in 136 aa overlap (20-151:10-145)

               10        20        30        40         50         
pF1KB6 MICLVLTIFANLFPAACTGAHERTFLAVKPDGVQRRLVGEIV-RRFERKGFKLVALKLVQ
                          : . :.  .:::.: . :. : : ...  . : .: .. . 
CCDS77           MASILRSPQALQLTLALIKPDAVAHPLILEAVHQQILSNKFLIVRMRELL
                         10        20        30        40        50

      60        70        80        90       100       110         
pF1KB6 ASEELLREHYAELRERPFYGRLVKYMASGPVVAMVWQGLDVVRTSRALIGATNPADA---
         .:  .. : : . : :: :::..:::::. :..    :...  :.:.: :    :   
CCDS77 WRKEDCQRFYREHEGRFFYQRLVEFMASGPIRAYILAHKDAIQLWRTLMGPTRVFRARHV
               60        70        80        90       100       110

        120       130       140       150       160                
pF1KB6 PPGTIRGDFCIEVGKNLIHGSDSVESARREIALWFRADELLCWEDSAGHWLYE       
        : .:::.: .   .:  :::::: :: :::: .:                         
CCDS77 APDSIRGSFGLTDTRNTTHGSDSVVSASREIAAFFPDFSEQRWYEEEEPQLRCGPVCYSP
              120       130       140       150       160       170

CCDS77 EGGVHYVAGTGGLGPA
              180      




169 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 14:09:51 2016 done: Sat Nov  5 14:09:52 2016
 Total Scan time:  1.930 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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