GENSCAN 1.0	Date run:  4-Nov-116	Time: 08:40:38

Sequence gi568815586r:43630379_43855245 : 224867 bp : 37.83% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +  19765  19858   94  0  1  109   75    79 0.168   7.32
 1.02 Intr +  29530  29712  183  2  0  -20   36   212 0.067   4.04
 1.03 Intr +  30168  30314  147  1  0  -20   21   214 0.106   3.19
 1.04 Term +  30386  30723  338  0  2   60   47   398 0.582  26.65
 1.05 PlyA +  31321  31326    6                               1.05

 2.03 PlyA -  31989  31984    6                               1.05
 2.02 Term -  45539  45053  487  1  1    9   48   268 0.023   8.09
 2.01 Init -  55772  55438  335  2  2   56   54   164 0.054   6.61
 2.00 Prom -  68581  68542   40                              -6.05

 3.04 PlyA -  68630  68625    6                               1.05
 3.03 Term -  68926  68815  112  0  1   28   49   196 0.569   6.75
 3.02 Intr -  80010  79925   86  0  2   99   44    43 0.232  -1.30
 3.01 Init -  80875  80810   66  1  0   68  108    27 0.483   3.82
 3.00 Prom -  87792  87753   40                              -3.85

 4.08 PlyA -  88633  88628    6                               1.05
 4.07 Term - 100324  99998  327  1  0  132   41   160 0.966   9.42
 4.06 Intr - 106281 106003  279  0  0   27  106   151 0.479   7.55
 4.05 Intr - 112177 112079   99  1  0   56   56    98 0.812   2.79
 4.04 Intr - 115860 115668  193  2  1   75  116   113 0.999  11.37
 4.03 Intr - 118231 118072  160  2  1   82   75   163 0.999  12.52
 4.02 Intr - 124883 123958  926  1  2  149   91   565 0.984  52.84
 4.01 Init - 129228 128930  299  0  2   75   78   141 0.178   8.70
 4.00 Prom - 132786 132747   40                              -5.85

 5.00 Prom + 135090 135129   40                              -6.35
 5.01 Init + 137734 137894  161  0  2   57   87    78 0.819   3.95
 5.02 Intr + 140842 140987  146  1  2   57   97    85 0.994   5.31
 5.03 Intr + 141802 141984  183  2  0   44  113   122 0.965   9.14
 5.04 Intr + 142534 142694  161  2  2   68   92   186 0.988  15.79
 5.05 Intr + 143587 143651   65  0  2   68  106    99 0.484   6.30
 5.06 Intr + 151929 152112  184  0  1   54  103   222 0.998  19.17
 5.07 Intr + 154008 154143  136  2  1   52   47    88 0.629   0.32
 5.08 Intr + 155309 155493  185  0  2   34  119    52 0.477   1.49
 5.09 Intr + 156021 156179  159  2  0   13   91   194 0.953  11.46
 5.10 Term + 161256 161426  171  2  0  -14   43   141 0.138  -3.76
 5.11 PlyA + 161496 161501    6                               1.05

 6.09 PlyA - 162158 162153    6                               1.05
 6.08 Term - 165377 165207  171  2  0   88   39   180 0.954   9.94
 6.07 Intr - 167455 167330  126  1  0   63   91   147 0.986  12.46
 6.06 Intr - 169124 169020  105  2  0   87  107    44 0.978   5.69
 6.05 Intr - 170152 170057   96  1  0   21   62   109 0.090   0.89
 6.04 Intr - 172086 171908  179  1  2   27  103    77 0.106   1.82
 6.03 Intr - 174194 174117   78  0  0   89   49    65 0.095   1.30
 6.02 Intr - 175652 175434  219  0  0   74   -8   171 0.117   3.45
 6.01 Init - 175969 175843  127  1  1   53   87   237 0.508  18.47
 6.00 Prom - 200296 200257   40                              -1.05

 7.02 PlyA - 203080 203075    6                               1.05
 7.01 Term - 205385 205226  160  1  1   71   34   138 0.046   3.13

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Sngl -  55772  55398  375  2  0   56   50   172 0.852   6.09
S.002 Init - 170140 170057   84  1  0   42   62   112 0.844   4.87
S.003 Term - 194112 193975  138  0  0   96   50   103 0.929   4.28
S.004 Init - 195812 195735   78  2  0   91   51    56 0.898   1.61


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815586r:43630379_43855245|GENSCAN_predicted_peptide_1|253_aa
VVQTQISKTADELISYWGTSFPPPFAASLTLYELEYCITIDISLWKFETSKYYATVIDAP
GHRDFIKNMITGTSQADCAVLIFAAGVGEFEAVTFAPVNVTTEVKSVEMHHEVLSEALPG
DNVDFDVKNVSVKEVHHGNVAGQISAGCAPVLDCHMAHIACKFAKLKKKTGSTSGKKLED
GPTFLKSGDAAIVDMVPGKPMCVESFSVYPPLSRFAVCDMRQTVAVGVIEAMDKKAAGAG
KVTKSTQKAQKAK

>gi568815586r:43630379_43855245|GENSCAN_predicted_CDS_1|762_bp
gtagtgcagacccaaatcagcaaaactgctgatgagctgatttcctactggggaacaagc
ttcccacctccctttgctgcatccttaaccttgtatgagcttgaatattgtatcaccatt
gatatctccctgtggaaatttgagaccagcaagtactacgcgactgtcattgatgcccca
ggacacagagacttcatcaaaaacatgattacagggacatctcaggctgactgtgctgtc
ctgatttttgctgctggtgttggtgaatttgaagctgtcacctttgctccggtcaatgtc
acaactgaagtcaagtctgttgaaatgcaccatgaagttttgagtgaagctcttcctggg
gacaatgtggacttcgatgtcaagaatgtgtctgtcaaggaggttcatcatggcaacgtt
gctggccaaatcagtgctggctgtgctcccgtactggattgccacatggctcacattgca
tgcaagtttgctaagctgaagaaaaagactggtagcacttctggtaaaaagctggaagat
ggccctactttcttgaagtctggtgatgctgccatcgttgatatggttcctggcaagccc
atgtgtgttgagagcttctcagtctacccacctctgagtcgctttgctgtttgtgatatg
agacagacagttgctgtgggtgtcatcgaagcaatggacaagaaggctgctggagctggc
aaggtcaccaagtctacccagaaagctcagaaggctaaatga

>gi568815586r:43630379_43855245|GENSCAN_predicted_peptide_2|273_aa
MILNEHAAFKHLFNKAHLAPPLIHLTLSGYSTRFREHRVGGKVTDQQDPKAEEFILVQNK
MKSLPCLLLSTQTRQPSDFSIFSPPFPAFYSTKPPLSSPPVLNELLGTPPRRGSTGVSLA
MGGVCGSQGSLPTLLPRQLEAAKLDTAGSGWFRLSRAGTGADLGEVLGQLSGHWDNRPGK
GRGISPVPQSQLRGRGVAWGFQRSRELWGLLSSHTLIWWVFLLSVSGSGNRPNQLGYFQV
IYAQITEPFQAFQSIKFPVAESKAIRPDTFQVL

>gi568815586r:43630379_43855245|GENSCAN_predicted_CDS_2|822_bp
atgattcttaacgagcatgctgccttcaagcatctgtttaacaaagcacatcttgcaccg
cccttaatccatttaaccctgagtggatacagcacacgtttcagagagcacagggttggg
ggtaaggtcaccgatcaacaggatcccaaggcagaagaatttatcttagtacagaacaaa
atgaaaagtctcccatgtctactactttctacacagacacggcaaccatccgatttctca
atcttttccccacctttccccgctttctattccacaaaaccgccattgtcatccccgccc
gttctcaatgagctgttgggtacacctcccagacggggaagtactggggtgtccctggcg
atgggtggggtgtgtggctctcaggggtcactccccacactgctgccaaggcagctagag
gcagcaaagctggacactgctgggtcaggctggttcaggctctctagggcaggtacaggt
gctgaccttggtgaagttctggggcagctctcaggccactgggacaaccgtccagggaag
ggcagaggcatctctcctgtgccacagagccagctcagaggaagaggggtggcctggggt
tttcagcgcagtagggagctgtggggcctgctcagctcccacaccctgatctggtgggtc
ttcctcctctcagtgtctggctctggcaacaggcccaaccagttaggctacttccaagtc
atctatgcccagatcactgagccattccaggcattccagagtataaaattccctgtggca
gaaagtaaggctatcaggccagacacattccaggtcctgtga

>gi568815586r:43630379_43855245|GENSCAN_predicted_peptide_3|87_aa
MNKTENDPSSEDGGRELVNNKQEKRGKSGEDYVLHVGYQLSYSRIGHQPESFRTNAPKDM
ALMSGGMPGSSSRVELEKTTQAQEEQF

>gi568815586r:43630379_43855245|GENSCAN_predicted_CDS_3|264_bp
atgaacaagacagagaatgatccttctagtgaagatggtgggagggagctggtaaacaat
aaacaagagaagagagggaagagtggggaagactatgtcttgcatgttggataccagctc
agctacagcaggatagggcaccagccagagtcattccgaaccaatgcaccaaaagatatg
gctctgatgagtggaggaatgccaggatcttcatctcgagttgaattagaaaaaacgaca
caggcacaggaggagcagttttaa

>gi568815586r:43630379_43855245|GENSCAN_predicted_peptide_4|760_aa
MSHRTWTGFAFIPLSPSGFQADRYTFFPHLRMYSSDPISRLHFLIPWKLGGRRNKRITIV
WRLSELLAPQASVRCWPDFLVLGKRDFISQSGSRNPGPERHCYRRMEEDTDYRIRFSSLC
FFNDHVGFHGTIKSSPSDFIVIEIDEQGQLVNKTIDEPIFKISEIQLEPNNFPKKPKLDL
QNLSLEDGRNQEVHTLIKYTDGDQNHQSGSEKEDTIVDGTSKCEEKADVLSSFLDEKTHE
LLNNFACDVREKWLSKTELIGLPPEFSIGRILDKNQRASLHSAIRQKFPFLVTVGKNSEI
VVKPNLEYKELCHLVSEEEAFDFFKYLDAKKENSKFTFKPDTNKDHRKAVHHFVNKKFGN
LVETKSFSKMNCSAGNPNVVVTVRFREKAHKRGKRPLSECQEGKVIYTAFTLRKENLEMF
EAIGFLAIKLGVIPSDFSYAGLKDKKAITYQAMVVRKVTPERLKNIEKEIEKKRMNVFNI
RSVDDSLRLGQLKGNHFDIVIRNLKKQINDSANLRERIMEAIENVKKKGFVNYYGPQRFG
KGRKVHTDQIGLALLKNEMDAKGTLSLMPEFKVRERALLEALHRFGMTEEGCIQAWFSLP
HSMRIFYVHAYTSKIWNEAVSYRLETYGARVVQGDLVCLDEDIDDENFPNSKVVLPVLGY
NIQYPKNKVGQWYHDILSRDGLQTCRFKVPTLKLNIPGCYRQILKHPCNLSYQLMEDHDI
DVKTKGSHIDETALSLLISFDLDASCYATVCLKEIMKHDV

>gi568815586r:43630379_43855245|GENSCAN_predicted_CDS_4|2283_bp
atgagccaccgcacctggacagggtttgcttttatccctttgtctccctctggcttccaa
gctgacaggtacacttttttcccccatctgcgaatgtactcatctgatcccataagccgc
ctccactttctaattccctggaagcttggaggccggagaaacaagcgaattacaatcgtg
tggaggctcagcgagctgctggcgccacaggcatctgtcaggtgctggcctgacttcctg
gttctggggaaaagagacttcatttcgcagtcgggttcacggaatccagggcctgagagg
cactgttatagaagaatggaagaagatacagattatagaatcaggtttagttctttgtgt
ttctttaatgatcacgttggatttcatggcactataaaaagctcaccaagtgactttatt
gttattgaaattgatgaacagggacagttagttaataagaccatcgatgagcctattttc
aagattagtgaaatacaacttgagccaaataattttcccaaaaaaccaaaactagatctt
caaaatctgtccttagaagatggaagaaaccaagaagttcatactttgattaagtacact
gatggtgaccaaaatcatcagtctggttcagaaaaggaagatactatcgttgatggaact
tccaaatgtgaagaaaaagctgatgttttaagctcctttttggatgaaaaaactcatgag
ttactgaataattttgcctgtgatgtaagagagaagtggctttctaaaacagagctaatt
ggactacctcctgaattctcaataggcagaatccttgacaaaaaccagagggctagttta
cacagtgccattaggcagaaatttccatttttagtaactgtaggaaaaaacagtgaaatt
gttgtaaaaccaaatcttgaatataaagaactttgtcatttggtatctgaagaggaagca
tttgacttttttaaatatttggatgcaaagaaagaaaattccaaatttacctttaaacct
gatacaaacaaagaccacagaaaagctgtccaccattttgtcaacaaaaagtttggaaac
cttgtggaaaccaaatctttttctaaaatgaattgcagtgctggtaatccgaatgtggtg
gtaacagtaagatttcgggaaaaagcacacaaacgtgggaaaaggcctctttctgaatgc
caagaaggaaaagttatatatacagcttttaccctacgaaaggaaaacctggaaatgttt
gaagcgattggttttttagctatcaaacttggtgttattccttcggattttagttatgca
ggccttaaagacaagaaagccatcacctatcaagcaatggttgttagaaaagtgactcca
gagaggttgaaaaatattgaaaaagaaattgaaaagaaaagaatgaatgtctttaatatt
cggtctgtagatgattccctgagacttggtcagctcaaaggaaatcactttgatattgtc
attagaaatttaaaaaaacaaataaatgattctgcaaacctgagggagagaattatggaa
gcaatagaaaatgttaagaaaaaaggctttgtgaattactatggaccacagagatttggg
aagggaaggaaagttcacacagaccaaattggactagctttgctgaagaatgaaatggat
gctaaaggcacactttcattgatgcctgaattcaaagtgcgtgagagagcattgttggag
gcattgcaccgctttggcatgaccgaggaaggttgtatccaggcatggttctctttaccc
cattccatgcgcatattctatgttcacgcatataccagcaaaatttggaatgaggcagta
tcttacagacttgaaacctatggagcaagagtagtgcagggtgatttggtctgtttggat
gaagacattgatgacgagaatttcccaaatagtaaagtggttcttccagtacttggatac
aatattcagtacccgaagaacaaagtagggcagtggtaccatgacatacttagcagagat
ggactacagacatgtaggtttaaagtacctactctgaaactgaatataccaggttgctat
agacagattttgaaacatccctgtaatctctcataccaactaatggaagatcatgacatt
gatgtcaaaacgaaaggttcccacattgatgaaacagctttgtctcttttgatctctttt
gatcttgatgcttcatgctatgctaccgtttgtctgaaggaaataatgaagcatgacgtt
taa

>gi568815586r:43630379_43855245|GENSCAN_predicted_peptide_5|516_aa
MNKPITPSTYVRCLNVGLIRKLSDFIDPQEGWKKLAVAIKKPSGDDRYNQFHIRRFEALL
QTGKSPTSELLFDWGTTNCTVGDLVDLLIQNEFFAPASLLLPDAVPKTANTLPSKEAITV
QQKQMPFCDKDRTLMTPVQNLEQSYMPPDSSSPENKSLEVSDTRFHSFSFYELKNVTNNF
DERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTEELKQQFDQEIKVMANA
NILLDEAFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALRGEITPKSDIYSFGV
HQSQIPQVKSSVPKTAIPPDTSCKFRPPELLTNCLQVGVPMTSSVGIHSEKCVVRQFHCV
NLIECTYTNLDDMTYDIPGLYGIAPRLQTYAIQHNTLLNTVSNCNTLLDIKEEIEDEEKT
IEDYIDKKMNDADSTSVEAMYSVASQCLHEKKNKRPDIKKNQLNEDPYWKAFDAQEWVST
AILCGRTHGFRRARDFASASEFSCGQKENDGGQILW

>gi568815586r:43630379_43855245|GENSCAN_predicted_CDS_5|1551_bp
atgaacaaacccataacaccatcaacatatgtgcgctgcctcaatgttggactaattagg
aagctgtcagattttattgatcctcaagaaggatggaagaagttagctgtagctattaaa
aaaccatctggtgatgatagatacaatcagtttcacataaggagatttgaagcattactt
caaactggaaaaagtcccacttctgaattactgtttgactggggcaccacaaattgcaca
gttggtgatcttgtggatcttttgatccaaaatgaattttttgctcctgcgagtcttttg
ctcccagatgctgttcccaaaactgctaatacactaccttctaaagaagctataacagtt
cagcaaaaacagatgcctttctgtgacaaagacaggacattgatgacacctgtgcagaat
cttgaacaaagctatatgccacctgactcctcaagtccagaaaataaaagtttagaagtt
agtgatacacgttttcacagtttttcattttatgaattgaagaatgtcacaaataacttt
gatgaacgacccatttctgttggtggtaataaaatgggagagggaggatttggagttgta
tataaaggctacgtaaataacacaactgtggcagtgaagaagcttgcagcaatggttgac
attactactgaagaactgaaacagcagtttgatcaagaaataaaagtaatggcaaatgca
aatatcttactggatgaagcttttactgctaaaatatctgactttggccttgcacgggct
tctgagaagtttgcccagacagtcatgactagcagaattgtgggaacaacagcttatatg
gcaccagaagctttgcgtggagaaataacacccaaatctgatatttacagctttggtgtg
catcagagtcagatcccacaggttaagagctcagtccccaagactgccatcccaccagac
accagttgtaagtttaggcctccagaacttctgaccaactgccttcaagttggagttcct
atgacctcctctgtgggaatacattccgagaaatgtgttgttaggcagtttcattgtgtg
aacctcatagagtgtacttacacaaacctagatgatatgacctacgacatacctgggcta
tatggtattgctcctaggctacaaacgtatgctatacagcataatactctcctgaatact
gtaagcaattgtaacacactgctagatattaaagaagaaattgaagatgaagaaaagaca
attgaagattatattgataaaaagatgaatgatgctgattccacttcagttgaagctatg
tactctgttgctagtcaatgtctgcatgaaaagaaaaataagagaccagacattaagaag
aatcagctgaatgaagatccctactggaaggcatttgatgctcaggaatgggtcagtact
gccattttgtgtggtagaacccatggctttcgcagggcaagagattttgccagtgctagt
gagttttcctgtggccagaaagaaaatgatggaggccagatcctctggtga

>gi568815586r:43630379_43855245|GENSCAN_predicted_peptide_6|366_aa
MTRRGRRRSSHFLGPPAGAAGCTQRRSRELAAAAMSHQTGIQARSLLPSRCRLIRNSGER
RKLAFEAAWLKGACLPPSPTVAQLSPFWSRREELGQWRRLGLQYAVENQASFLFHASEDV
KEIFARARNGKYRLLKISIENEQLVIGSYSQPSDSWDKDYDSFVLPLLEDKQPCYILFRL
DSQNAQGYEWIFIAWSPDHSHVRQKMLYAATRATLKKEFGGGHIKDEVFGTVKEDVSLHG
YKKYLLSQSSPAPLTAAEEELRQIKINEVQTDVGVDTKHQTLQGVAFPISREAFQALEKL
NNRQLNYVQLIEIDNGDELTADFLYEEVHPKQHAHKQSFAKPKGPAGKRGIRRLIRGPAE
TEATTD

>gi568815586r:43630379_43855245|GENSCAN_predicted_CDS_6|1101_bp
atgacgcgccggggccggcggaggagcagccacttcctggggccgccggccggggccgct
ggctgcactcagcgccggagccgggagctagcggccgccgccatgtcccaccagaccggc
atccaagcccggtccctgctgccgtcacgttgcagattgatccgaaattcgggggagcga
aggaaattggctttcgaggcggcctggttgaagggggcgtgccttccaccgtccccgaca
gtcgcccaactttcccccttttggtcacgtagggaagagctgggacagtggaggcgactg
gggcttcagtacgctgtcgagaaccaggcgagttttctttttcatgcaagtgaagatgtt
aaagagatctttgccagagccagaaatggaaagtacagacttctgaaaatatctattgaa
aatgagcaacttgtgattggatcatatagtcagccttcagattcctgggataaggattat
gattcctttgttttacccctgttggaggacaaacaaccatgctatatattattcaggtta
gattctcagaatgcccagggatatgaatggatattcattgcatggtctccagatcattct
catgttcgtcaaaaaatgttgtatgcagcaacaagagcaactctgaagaaggaatttgga
ggtggccacattaaagatgaagtatttggaacagtaaaggaagatgtatcattacatgga
tataaaaaatacttgctgtcacaatcttcccctgccccactgactgcagctgaggaagaa
ctacgacagattaaaatcaatgaggtacagactgacgtgggtgtggacactaagcatcaa
acactacaaggagtagcatttcccatttctcgagaagcctttcaggctttggaaaaattg
aataatagacagctcaactatgtgcagttgatcgagatagacaatggggatgagttgact
gcagacttcctttatgaagaagtacatcccaagcagcatgcacacaagcaaagttttgca
aaaccaaaaggtcctgcaggaaaaagaggaattcgaagactaattaggggcccagcggaa
actgaagctactactgattaa

>gi568815586r:43630379_43855245|GENSCAN_predicted_peptide_7|53_aa
XAAAAGEGRTQEPGGGWGAADRKSTILQGTNEGPTGMSSKSYKLSKAISGRKT

>gi568815586r:43630379_43855245|GENSCAN_predicted_CDS_7|162_bp
nnagcggcagctgcaggcgagggacggactcaggaacctggtgggggttggggggcggct
gacagaaaatccaccatcctgcagggaaccaatgagggtcccactggaatgtcctcgaag
agctacaaactttcgaaagcaatctcaggtcgcaaaacatga