Result of FASTA (omim) for pF1KE3123
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3123, 310 aa
  1>>>pF1KE3123     310 - 310 aa - 310 aa
Library: /omim/omim.rfq.tfa
  64369986 residues in 92320 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3956+/-0.000326; mu= 15.8301+/- 0.020
 mean_var=73.4751+/-14.645, 0's: 0 Z-trim(115.6): 86  B-trim: 35 in 1/50
 Lambda= 0.149625
 statistics sampled from 27132 (27220) to 27132 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.666), E-opt: 0.2 (0.295), width:  16
 Scan time:  3.600

The best scores are:                                      opt bits E(92320)
NP_005796 (OMIM: 607173) 26S proteasome non-ATPase ( 310) 2053 452.2 6.6e-127
NP_006828 (OMIM: 604850) COP9 signalosome complex  ( 334)  474 111.4 2.8e-24
NP_003747 (OMIM: 603912) eukaryotic translation in ( 352)  225 57.7 4.4e-08
XP_011538876 (OMIM: 612176,618116) histone H2A deu ( 739)  186 49.4 2.8e-05
XP_011538875 (OMIM: 612176,618116) histone H2A deu ( 761)  186 49.4 2.8e-05
XP_006710377 (OMIM: 612176,618116) histone H2A deu ( 827)  186 49.5   3e-05
NP_001078956 (OMIM: 612176,618116) histone H2A deu ( 828)  186 49.5   3e-05
NP_077308 (OMIM: 300617) lys-63-specific deubiquit ( 316)  174 46.6 8.4e-05
XP_005274808 (OMIM: 300617) lys-63-specific deubiq ( 317)  174 46.6 8.4e-05
NP_001018065 (OMIM: 300617) lys-63-specific deubiq ( 291)  162 44.0 0.00047
XP_016885327 (OMIM: 300617) lys-63-specific deubiq ( 291)  162 44.0 0.00047
NP_001229569 (OMIM: 300617) lys-63-specific deubiq ( 292)  162 44.0 0.00047
XP_016871947 (OMIM: 612352) AMSH-like protease iso ( 330)  157 43.0  0.0011
XP_006717993 (OMIM: 612352) AMSH-like protease iso ( 436)  157 43.0  0.0014
XP_011538287 (OMIM: 612352) AMSH-like protease iso ( 436)  157 43.0  0.0014
XP_016871945 (OMIM: 612352) AMSH-like protease iso ( 436)  157 43.0  0.0014
XP_016871942 (OMIM: 612352) AMSH-like protease iso ( 436)  157 43.0  0.0014
XP_006717991 (OMIM: 612352) AMSH-like protease iso ( 436)  157 43.0  0.0014
NP_065850 (OMIM: 612352) AMSH-like protease [Homo  ( 436)  157 43.0  0.0014
XP_011538285 (OMIM: 612352) AMSH-like protease iso ( 436)  157 43.0  0.0014
XP_016871944 (OMIM: 612352) AMSH-like protease iso ( 436)  157 43.0  0.0014
NP_002802 (OMIM: 157970) 26S proteasome non-ATPase ( 324)  151 41.7  0.0027


>>NP_005796 (OMIM: 607173) 26S proteasome non-ATPase reg  (310 aa)
 initn: 2053 init1: 2053 opt: 2053  Z-score: 2400.0  bits: 452.2 E(92320): 6.6e-127
Smith-Waterman score: 2053; 100.0% identity (100.0% similar) in 310 aa overlap (1-310:1-310)

               10        20        30        40        50        60
pF1KE3 MDRLLRLGGGMPGLGQGPPTDAPAVDTAEQVYISSLALLKMLKHGRAGVPMEVMGLMLGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MDRLLRLGGGMPGLGQGPPTDAPAVDTAEQVYISSLALLKMLKHGRAGVPMEVMGLMLGE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 FVDDYTVRVIDVFAMPQSGTGVSVEAVDPVFQAKMLDMLKQTGRPEMVVGWYHSHPGFGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 FVDDYTVRVIDVFAMPQSGTGVSVEAVDPVFQAKMLDMLKQTGRPEMVVGWYHSHPGFGC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 WLSGVDINTQQSFEALSERAVAVVVDPIQSVKGKVVIDAFRLINANMMVLGHEPRQTTSN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 WLSGVDINTQQSFEALSERAVAVVVDPIQSVKGKVVIDAFRLINANMMVLGHEPRQTTSN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 LGHLNKPSIQALIHGLNRHYYSITINYRKNELEQKMLLNLHKKSWMEGLTLQDYSEHCKH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 LGHLNKPSIQALIHGLNRHYYSITINYRKNELEQKMLLNLHKKSWMEGLTLQDYSEHCKH
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 NESVVKEMLELAKNYNKAVEEEDKMTPEQLAIKNVGKQDPKRHLEEHVDVLMTSNIVQCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 NESVVKEMLELAKNYNKAVEEEDKMTPEQLAIKNVGKQDPKRHLEEHVDVLMTSNIVQCL
              250       260       270       280       290       300

              310
pF1KE3 AAMLDTVVFK
       ::::::::::
NP_005 AAMLDTVVFK
              310

>>NP_006828 (OMIM: 604850) COP9 signalosome complex subu  (334 aa)
 initn: 414 init1: 236 opt: 474  Z-score: 557.5  bits: 111.4 E(92320): 2.8e-24
Smith-Waterman score: 474; 35.7% identity (65.9% similar) in 252 aa overlap (33-271:57-301)

             10        20        30        40        50        60  
pF1KE3 RLLRLGGGMPGLGQGPPTDAPAVDTAEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFV
                                     ::.::::::. :.:.:  .::::::::. :
NP_006 EIYKYDKKQQQEILAAKPWTKDHHYFKYCKISALALLKMVMHARSGGNLEVMGLMLGK-V
         30        40        50        60        70        80      

             70        80        90         100       110       120
pF1KE3 DDYTVRVIDVFAMPQSGTGVSVEAVDPVFQ--AKMLDMLKQTGRPEMVVGWYHSHPGFGC
       :  :. ..: ::.:  :: . :.:   ...  : ...  ::.:: : ..::::::::.::
NP_006 DGETMIIMDSFALPVEGTETRVNAQAAAYEYMAAYIENAKQVGRLENAIGWYHSHPGYGC
          90       100       110       120       130       140     

              130       140       150        160       170         
pF1KE3 WLSGVDINTQQSFEALSERAVAVVVDPIQSVK-GKVVIDAFRLINANMMVLGHEPRQTTS
       ::::.:..::.  . ..:  ::::.:: .... ::: . :::    ..    . : .  :
NP_006 WLSGIDVSTQMLNQQFQEPFVAVVIDPTRTISAGKVNLGAFRTYPKGY----KPPDEGPS
         150       160       170       180       190           200 

     180       190        200       210       220             230  
pF1KE3 NLGHLNKPSIQAL-IHGLNRHYYSITINYRKNELEQKMLLNLHKKSWMEGL------TLQ
       .   .   .:. . .:   ..::.. ..: :. :..:.:  : .: :.. :      :  
NP_006 EYQTIPLNKIEDFGVH--CKQYYALEVSYFKSSLDRKLLELLWNKYWVNTLSSSSLLTNA
             210         220       230       240       250         

              240       250        260       270       280         
pF1KE3 DYS--EHCKHNESVVKEMLELAK-NYNKAVEEEDKMTPEQLAIKNVGKQDPKRHLEEHVD
       ::.  .    .:.. .   .:.. ..  ..: .:. . ..::                  
NP_006 DYTTGQVFDLSEKLEQSEAQLGRGSFMLGLETHDRKSEDKLAKATRDSCKTTIEAIHGLM
     260       270       280       290       300       310         

     290       300       310
pF1KE3 VLMTSNIVQCLAAMLDTVVFK
                            
NP_006 SQVIKDKLFNQINIS      
     320       330          

>>NP_003747 (OMIM: 603912) eukaryotic translation initia  (352 aa)
 initn: 122 init1:  74 opt: 225  Z-score: 266.6  bits: 57.7 E(92320): 4.4e-08
Smith-Waterman score: 244; 24.8% identity (59.6% similar) in 282 aa overlap (8-283:20-275)

                           10        20        30        40        
pF1KE3             MDRLLRLGGGMPGLGQGPPTDAPAVDTAEQVYISSLALLKMLKHGRA-
                          :..  : :.:   :. ::   .:: :..:..::..:: .  
NP_003 MASRKEGTGSTATSSSSTAGAAGKGKGKGGSGDS-AV---KQVQIDGLVVLKIIKHYQEE
               10        20        30            40        50      

        50         60        70        80        90       100      
pF1KE3 GVPMEVM-GLMLGEFVDDYTVRVIDVFAMPQSGTGVSVEAVDPVFQAKMLDMLKQTGRPE
       :   ::. :..::  :.:  ... . : .::  :  ...  .  .: .:.  :....  .
NP_003 GQGTEVVQGVLLGLVVEDR-LEITNCFPFPQH-TEDDADFDEVQYQMEMMRSLRHVNIDH
         60        70         80         90       100       110    

        110       120       130       140       150       160      
pF1KE3 MVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQSVKGKVVIDAFRLINAN
       . ::::.:   .: ... . ...: :..   :..:... :::....:.. . :.::    
NP_003 LHVGWYQS-TYYGSFVTRALLDSQFSYQHAIEESVVLIYDPIKTAQGSLSLKAYRLTPKL
          120        130       140       150       160       170   

        170       180       190       200       210       220      
pF1KE3 MMVLGHEPRQTTSNLGHLNKPSIQALIHGLNRHYYSITINYRKNELEQKMLLNLHKKSWM
       : :  ..  .  .    :.: .:      ..  .  . :  ....: . .. .:.:::  
NP_003 MEVCKEKDFSPEA----LKKANIT-----FEYMFEEVPIVIKNSHLINVLMWELEKKS--
           180           190            200       210       220    

        230       240       250       260       270           280  
pF1KE3 EGLTLQDYSEHCKHNESVVKEMLELAKNYNKAVEEEDKMTPEQLA----IKNVGKQDPKR
          .. :     ::.   .    .:.:: .  ... :.:. . .     ..:..::. ..
NP_003 ---AVAD-----KHELLSLASSNHLGKNLQLLMDRVDEMSQDIVKYNTYMRNTSKQQQQK
                    230       240       250       260       270    

            290       300       310                                
pF1KE3 HLEEHVDVLMTSNIVQCLAAMLDTVVFK                                
       :                                                           
NP_003 HQYQQRRQQENMQRQSRGEPPLPEEDLSKLFKPPQPPARMDSLLIAGQINTYCQNIKEFT
          280       290       300       310       320       330    

>>XP_011538876 (OMIM: 612176,618116) histone H2A deubiqu  (739 aa)
 initn: 107 init1: 107 opt: 186  Z-score: 216.5  bits: 49.4 E(92320): 2.8e-05
Smith-Waterman score: 186; 34.1% identity (63.4% similar) in 123 aa overlap (30-147:487-605)

                10        20        30        40        50         
pF1KE3  MDRLLRLGGGMPGLGQGPPTDAPAVDTAEQVYISSLALLKMLKHGRAGVPMEVMGLMLG
                                     :: ..: ::: :  :.....  ::.::. :
XP_011 LKVPRPTKSSFDPFQLIPCNFFSEEKQEPFQVKVASEALLIMDLHAHVSMA-EVIGLLGG
        460       470       480       490       500        510     

      60         70        80        90       100       110        
pF1KE3 EFVD-DYTVRVIDVFAMPQSGTGVSVEAVDPVFQAKMLDMLKQTGRPEMVVGWYHSHPGF
       .. . : .:.:  .    . .::.. : .::: :..  . :   :    :.:::::::.:
XP_011 RYSEVDKVVEVCAAEPCNSLSTGLQCE-MDPVSQTQASETLAVRGFS--VIGWYHSHPAF
         520       530       540        550       560         570  

      120       130       140           150       160       170    
pF1KE3 GCWLSGVDINTQQSFEALSERA----VAVVVDPIQSVKGKVVIDAFRLINANMMVLGHEP
           :  ::.:: ....   :.    ....:.:                           
XP_011 DPNPSLRDIDTQAKYQSYFSRGGAKFIGMIVSPYNRNNPLPYSQITCLVISEEISPDGSY
            580       590       600       610       620       630  

          180       190       200       210       220       230    
pF1KE3 RQTTSNLGHLNKPSIQALIHGLNRHYYSITINYRKNELEQKMLLNLHKKSWMEGLTLQDY
                                                                   
XP_011 RLPYKFEVQQMLEEPQWGLVFEKTRWIIEKYRLSHSSVPMDKIFRRDSDLTCLQKLLECM
            640       650       660       670       680       690  

>>XP_011538875 (OMIM: 612176,618116) histone H2A deubiqu  (761 aa)
 initn: 107 init1: 107 opt: 186  Z-score: 216.3  bits: 49.4 E(92320): 2.8e-05
Smith-Waterman score: 186; 34.1% identity (63.4% similar) in 123 aa overlap (30-147:509-627)

                10        20        30        40        50         
pF1KE3  MDRLLRLGGGMPGLGQGPPTDAPAVDTAEQVYISSLALLKMLKHGRAGVPMEVMGLMLG
                                     :: ..: ::: :  :.....  ::.::. :
XP_011 LKVPRPTKSSFDPFQLIPCNFFSEEKQEPFQVKVASEALLIMDLHAHVSMA-EVIGLLGG
      480       490       500       510       520        530       

      60         70        80        90       100       110        
pF1KE3 EFVD-DYTVRVIDVFAMPQSGTGVSVEAVDPVFQAKMLDMLKQTGRPEMVVGWYHSHPGF
       .. . : .:.:  .    . .::.. : .::: :..  . :   :    :.:::::::.:
XP_011 RYSEVDKVVEVCAAEPCNSLSTGLQCE-MDPVSQTQASETLAVRGFS--VIGWYHSHPAF
       540       550       560        570       580         590    

      120       130       140           150       160       170    
pF1KE3 GCWLSGVDINTQQSFEALSERA----VAVVVDPIQSVKGKVVIDAFRLINANMMVLGHEP
           :  ::.:: ....   :.    ....:.:                           
XP_011 DPNPSLRDIDTQAKYQSYFSRGGAKFIGMIVSPYNRNNPLPYSQITCLVISEEISPDGSY
          600       610       620       630       640       650    

          180       190       200       210       220       230    
pF1KE3 RQTTSNLGHLNKPSIQALIHGLNRHYYSITINYRKNELEQKMLLNLHKKSWMEGLTLQDY
                                                                   
XP_011 RLPYKFEVQQMLEEPQWGLVFEKTRWIIEKYRLSHSSVPMDKIFRRDSDLTCLQKLLECM
          660       670       680       690       700       710    

>>XP_006710377 (OMIM: 612176,618116) histone H2A deubiqu  (827 aa)
 initn:  92 init1:  92 opt: 186  Z-score: 215.8  bits: 49.5 E(92320): 3e-05
Smith-Waterman score: 186; 34.1% identity (63.4% similar) in 123 aa overlap (30-147:576-694)

                10        20        30        40        50         
pF1KE3  MDRLLRLGGGMPGLGQGPPTDAPAVDTAEQVYISSLALLKMLKHGRAGVPMEVMGLMLG
                                     :: ..: ::: :  :.....  ::.::. :
XP_006 LKVPRPTKSSFDPFQLIPCNFFSEEKQEPFQVKVASEALLIMDLHAHVSMA-EVIGLLGG
         550       560       570       580       590        600    

      60         70        80        90       100       110        
pF1KE3 EFVD-DYTVRVIDVFAMPQSGTGVSVEAVDPVFQAKMLDMLKQTGRPEMVVGWYHSHPGF
       .. . : .:.:  .    . .::.. : .::: :..  . :   :    :.:::::::.:
XP_006 RYSEVDKVVEVCAAEPCNSLSTGLQCE-MDPVSQTQASETLAVRGFS--VIGWYHSHPAF
          610       620       630        640       650         660 

      120       130       140           150       160       170    
pF1KE3 GCWLSGVDINTQQSFEALSERA----VAVVVDPIQSVKGKVVIDAFRLINANMMVLGHEP
           :  ::.:: ....   :.    ....:.:                           
XP_006 DPNPSLRDIDTQAKYQSYFSRGGAKFIGMIVSPYNRNNPLPYSQITCLVISEEISPDGSY
             670       680       690       700       710       720 

          180       190       200       210       220       230    
pF1KE3 RQTTSNLGHLNKPSIQALIHGLNRHYYSITINYRKNELEQKMLLNLHKKSWMEGLTLQDY
                                                                   
XP_006 RLPYKFEVQQMLEEPQWGLVFEKTRWIIEKYRLSHSVPMDKIFRRDSDLTCLQKLLECMR
             730       740       750       760       770       780 

>>NP_001078956 (OMIM: 612176,618116) histone H2A deubiqu  (828 aa)
 initn: 107 init1: 107 opt: 186  Z-score: 215.8  bits: 49.5 E(92320): 3e-05
Smith-Waterman score: 186; 34.1% identity (63.4% similar) in 123 aa overlap (30-147:576-694)

                10        20        30        40        50         
pF1KE3  MDRLLRLGGGMPGLGQGPPTDAPAVDTAEQVYISSLALLKMLKHGRAGVPMEVMGLMLG
                                     :: ..: ::: :  :.....  ::.::. :
NP_001 LKVPRPTKSSFDPFQLIPCNFFSEEKQEPFQVKVASEALLIMDLHAHVSMA-EVIGLLGG
         550       560       570       580       590        600    

      60         70        80        90       100       110        
pF1KE3 EFVD-DYTVRVIDVFAMPQSGTGVSVEAVDPVFQAKMLDMLKQTGRPEMVVGWYHSHPGF
       .. . : .:.:  .    . .::.. : .::: :..  . :   :    :.:::::::.:
NP_001 RYSEVDKVVEVCAAEPCNSLSTGLQCE-MDPVSQTQASETLAVRGFS--VIGWYHSHPAF
          610       620       630        640       650         660 

      120       130       140           150       160       170    
pF1KE3 GCWLSGVDINTQQSFEALSERA----VAVVVDPIQSVKGKVVIDAFRLINANMMVLGHEP
           :  ::.:: ....   :.    ....:.:                           
NP_001 DPNPSLRDIDTQAKYQSYFSRGGAKFIGMIVSPYNRNNPLPYSQITCLVISEEISPDGSY
             670       680       690       700       710       720 

          180       190       200       210       220       230    
pF1KE3 RQTTSNLGHLNKPSIQALIHGLNRHYYSITINYRKNELEQKMLLNLHKKSWMEGLTLQDY
                                                                   
NP_001 RLPYKFEVQQMLEEPQWGLVFEKTRWIIEKYRLSHSSVPMDKIFRRDSDLTCLQKLLECM
             730       740       750       760       770       780 

>>NP_077308 (OMIM: 300617) lys-63-specific deubiquitinas  (316 aa)
 initn: 191 init1: 146 opt: 174  Z-score: 207.8  bits: 46.6 E(92320): 8.4e-05
Smith-Waterman score: 197; 27.3% identity (53.6% similar) in 194 aa overlap (25-185:6-199)

               10        20        30        40        50        60
pF1KE3 MDRLLRLGGGMPGLGQGPPTDAPAVDTAEQVYISSLALLKMLKHGRAGVPMEVMGLMLGE
                               :.... :.. : :.:  :.:. .    ::::: .::
NP_077                    MAVQVVQAVQAVHLESDAFLVCLNHALSTEKEEVMGLCIGE
                                  10        20        30        40 

                                    70           80            90  
pF1KE3 FVDD--------YT-------------VRVI---DVFAMPQSGTGVSVEAVDP----VFQ
       . ::        ::             ::..   .:. . .:    .   ..:    . .
NP_077 LNDDTRSDSKFAYTGTEMRTVAEKVDAVRIVHIHSVIILRRSDKRKDRVEISPEQLSAAS
              50        60        70        80        90       100 

            100       110       120       130       140            
pF1KE3 AKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVV----VDPI
       ..   . . ::::  ::::::::: .  : : ::. ::  .. ...  :...    ..  
NP_077 TEAERLAELTGRPMRVVGWYHSHPHITVWPSHVDVRTQAMYQMMDQGFVGLIFSCFIEDK
             110       120       130       140       150       160 

      150       160       170        180       190       200       
pF1KE3 QSVKGKVVIDAFRLINANMMVLG-HEPRQTTSNLGHLNKPSIQALIHGLNRHYYSITINY
       ..  :.:.   :. :.:.    . : ::.  :.  :..                      
NP_077 NTKTGRVLYTCFQSIQAQKSSESLHGPRDFWSSSQHISIEGQKEEERYERIEIPIHIVPH
             170       180       190       200       210       220 

       210       220       230       240       250       260       
pF1KE3 RKNELEQKMLLNLHKKSWMEGLTLQDYSEHCKHNESVVKEMLELAKNYNKAVEEEDKMTP
                                                                   
NP_077 VTIGKVCLESAVELPKILCQEEQDAYRRIHSLTHLDSVTKIHNGSVFTKNLCSQMSAVSG
             230       240       250       260       270       280 

>>XP_005274808 (OMIM: 300617) lys-63-specific deubiquiti  (317 aa)
 initn: 191 init1: 146 opt: 174  Z-score: 207.8  bits: 46.6 E(92320): 8.4e-05
Smith-Waterman score: 198; 27.6% identity (52.0% similar) in 196 aa overlap (25-185:6-200)

               10        20        30        40        50        60
pF1KE3 MDRLLRLGGGMPGLGQGPPTDAPAVDTAEQVYISSLALLKMLKHGRAGVPMEVMGLMLGE
                               :.... :.. : :.:  :.:. .    ::::: .::
XP_005                    MAVQVVQAVQAVHLESDAFLVCLNHALSTEKEEVMGLCIGE
                                  10        20        30        40 

               70        80        90                              
pF1KE3 FVDDYTVRVIDVFAMPQSGTGVSVEAVDPVFQAKMLDML---------------------
       . :: : :  . ::.  .   . .: :: :  ... ...                     
XP_005 LNDD-TSRSDSKFAYTGTEMRTVAEKVDAVRIVHIHSVIILRRSDKRKDRVEISPEQLSA
               50        60        70        80        90       100

              100       110       120       130       140          
pF1KE3 ---------KQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVV----VD
                . ::::  ::::::::: .  : : ::. ::  .. ...  :...    ..
XP_005 ASTEAERLAELTGRPMRVVGWYHSHPHITVWPSHVDVRTQAMYQMMDQGFVGLIFSCFIE
              110       120       130       140       150       160

        150       160       170        180       190       200     
pF1KE3 PIQSVKGKVVIDAFRLINANMMVLG-HEPRQTTSNLGHLNKPSIQALIHGLNRHYYSITI
         ..  :.:.   :. :.:.    . : ::.  :.  :..                    
XP_005 DKNTKTGRVLYTCFQSIQAQKSSESLHGPRDFWSSSQHISIEGQKEEERYERIEIPIHIV
              170       180       190       200       210       220

         210       220       230       240       250       260     
pF1KE3 NYRKNELEQKMLLNLHKKSWMEGLTLQDYSEHCKHNESVVKEMLELAKNYNKAVEEEDKM
                                                                   
XP_005 PHVTIGKVCLESAVELPKILCQEEQDAYRRIHSLTHLDSVTKIHNGSVFTKNLCSQMSAV
              230       240       250       260       270       280

>>NP_001018065 (OMIM: 300617) lys-63-specific deubiquiti  (291 aa)
 initn: 191 init1: 146 opt: 162  Z-score: 194.3  bits: 44.0 E(92320): 0.00047
Smith-Waterman score: 185; 27.7% identity (53.8% similar) in 173 aa overlap (25-165:6-178)

               10        20        30        40        50        60
pF1KE3 MDRLLRLGGGMPGLGQGPPTDAPAVDTAEQVYISSLALLKMLKHGRAGVPMEVMGLMLGE
                               :.... :.. : :.:  :.:. .    ::::: .::
NP_001                    MAVQVVQAVQAVHLESDAFLVCLNHALSTEKEEVMGLCIGE
                                  10        20        30        40 

                                    70           80            90  
pF1KE3 FVDD--------YT-------------VRVI---DVFAMPQSGTGVSVEAVDP----VFQ
       . ::        ::             ::..   .:. . .:    .   ..:    . .
NP_001 LNDDTRSDSKFAYTGTEMRTVAEKVDAVRIVHIHSVIILRRSDKRKDRVEISPEQLSAAS
              50        60        70        80        90       100 

            100       110       120       130       140            
pF1KE3 AKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVV----VDPI
       ..   . . ::::  ::::::::: .  : : ::. ::  .. ...  :...    ..  
NP_001 TEAERLAELTGRPMRVVGWYHSHPHITVWPSHVDVRTQAMYQMMDQGFVGLIFSCFIEDK
             110       120       130       140       150       160 

      150       160       170       180       190       200        
pF1KE3 QSVKGKVVIDAFRLINANMMVLGHEPRQTTSNLGHLNKPSIQALIHGLNRHYYSITINYR
       ..  :.:.   :. :.:                                           
NP_001 NTKTGRVLYTCFQSIQAQKSSEYERIEIPIHIVPHVTIGKVCLESAVELPKILCQEEQDA
             170       180       190       200       210       220 




310 residues in 1 query   sequences
64369986 residues in 92320 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Oct 24 21:58:38 2019 done: Thu Oct 24 21:58:38 2019
 Total Scan time:  3.600 Total Display time:  0.040

Function used was FASTA [36.3.4 Apr, 2011]
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