GENSCAN 1.0	Date run:  4-Nov-116	Time: 22:32:06

Sequence gi568815593r:178612063_178827128 : 215066 bp : 45.23% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.12 Intr -    483    354  130  0  1   63   52   133 0.529   7.47
 1.11 Intr -    828    734   95  1  2  101  115     3 0.997   3.98
 1.10 Intr -   1577   1411  167  1  2   82   87    54 0.999   4.30
 1.09 Intr -   1781   1665  117  1  0   67   89    81 0.942   5.68
 1.08 Intr -   4886   4820   67  0  1  109  103    78 0.945   9.36
 1.07 Intr -  11354  11194  161  1  2   71   27   105 0.117   2.33
 1.06 Intr -  15793  15701   93  0  0   94   99    -4 0.051   0.38
 1.05 Intr -  20928  20890   39  2  0   24   91    95 0.031   0.74
 1.04 Intr -  41134  41063   72  0  0   45   80   136 0.046   7.02
 1.03 Intr -  47180  47051  130  0  1   21  -16   217 0.027   4.35
 1.02 Intr -  50374  50280   95  0  2   80   67    23 0.158  -0.99
 1.01 Init -  50601  50558   44  0  2  119   52    68 0.357   4.68
 1.00 Prom -  59017  58978   40                              -3.26

 2.09 PlyA -  62693  62688    6                               1.05
 2.08 Term -  72180  72056  125  1  2   76   41    94 0.944   2.05
 2.07 Intr -  73420  73316  105  2  0   73  110    50 0.858   5.89
 2.06 Intr -  77512  77431   82  1  1   -8  113    50 0.287  -2.89
 2.05 Intr -  82885  82758  128  2  2  131   80    87 0.877  12.60
 2.04 Intr -  83022  82939   84  1  0   75   92    35 0.748   2.39
 2.03 Intr -  83536  83225  312  2  0   72   72   165 0.942   9.46
 2.02 Intr -  84119  84035   85  2  1   77   92    63 0.353   4.99
 2.01 Init -  97595  97593    3  2  0   64  103     0 0.014  -0.90
 2.00 Prom -  99853  99814   40                              -5.76

 3.07 PlyA -  99928  99923    6                               1.05
 3.06 Term - 101559  99998 1562  1  2  114   43   571 0.893  45.76
 3.05 Intr - 113409 113314   96  1  0   72   97    41 0.529   3.38
 3.04 Intr - 115063 114937  127  1  1   80   82   125 0.981  11.35
 3.03 Intr - 117011 116928   84  2  0   93   99    46 0.560   6.22
 3.02 Intr - 117302 117205   98  0  2   23   68    98 0.435   1.03
 3.01 Init - 118707 118626   82  0  1   43   72   108 0.501   3.83
 3.00 Prom - 123628 123589   40                              -1.26

 4.00 Prom + 135762 135801   40                              -2.46
 4.01 Init + 143943 144014   72  2  0   71   40   140 0.238   6.60
 4.02 Term + 145048 145134   87  0  0   90   43    55 0.589  -1.14
 4.03 PlyA + 146960 146965    6                               1.05

 5.08 PlyA - 149346 149341    6                               1.05
 5.07 Term - 155273 155136  138  2  0   87   47   226 0.681  16.36
 5.06 Intr - 160569 160367  203  1  2  105   60   309 0.697  28.80
 5.05 Intr - 162523 162436   88  1  1   64   77    49 0.462   0.94
 5.04 Intr - 163274 163205   70  1  1  119   94    53 0.612   8.18
 5.03 Intr - 163653 163511  143  0  2  102   11    68 0.566  -0.35
 5.02 Intr - 164214 164080  135  0  0   73   75   112 0.956   9.16
 5.01 Init - 166741 166736    6  1  0   92   60    17 0.367  -0.82
 5.00 Prom - 167114 167075   40                              -6.36

 6.05 PlyA - 167247 167242    6                               1.05
 6.04 Term - 170306 170164  143  0  2  -21   38   190 0.143   1.19
 6.03 Intr - 175064 175006   59  1  2   52  100   102 0.648   6.33
 6.02 Intr - 176847 176727  121  1  1   70   99    73 0.905   6.15
 6.01 Init - 178635 178560   76  0  1   72   64    71 0.897   2.54
 6.00 Prom - 180435 180396   40                              -4.26

 7.00 Prom + 180561 180600   40                              -5.66
 7.01 Init + 180737 180825   89  1  2   95   88    39 0.945   4.71
 7.02 Term + 181070 181469  400  2  1   82   44   290 0.781  18.59
 7.03 PlyA + 181758 181763    6                              -1.75

 8.03 PlyA - 182264 182259    6                               1.05
 8.02 Term - 185549 185427  123  2  0  132   49   173 0.703  16.18
 8.01 Init - 185834 185607  228  2  0   82   80    86 0.809   4.34
 8.00 Prom - 190520 190481   40                              -2.46

 9.02 PlyA - 191280 191275    6                               1.05
 9.01 Term - 206939 206700  240  2  0   68   49   192 0.525   9.33

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Sngl -  30344  30123  222  2  0  100   55   142 0.870   7.33
S.002 Init + 138031 138159  129  0  0   88   33    94 0.813   4.06
S.003 Term + 139625 139708   84  1  0  115   42    34 0.824  -0.85
S.004 Sngl - 191634 191086  549  0  0   86   41   164 0.889   7.62


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815593r:178612063_178827128|GENSCAN_predicted_peptide_1|404_aa
METSLTPMALPLVRRLMCPGSDKGLRLGREEGSLATPIEHHVDQGAVHVEDPAEALAGIK
HQQLAAAIIVTSIIISTVTIVTKAACRWVCVIHNSQDMETTDMSIDGGMDEEACGSDNPD
GYYVTVRAPTLTLIFLMLHTYTGELPEGPQNCRIPYLRCGIPKELTVLIGIAEKAGDMKA
IVEVTSGRGDLIVAHKRTGIVNHITSLKNLIDEIVDTLGEGAFGKVVECIDHGMDGMHVA
VKIVKNVGRYREAARSEIQVLEHLNSTDPNSVFRCVQMLEWFDHHGHVCIVFELLGLSTY
DFIKENSFLPFQIDHIRQMAYQICQSINFLHHNKLTHTDLKPENILFVKSDYVVKYNSKM
KRDERTLKNTDIKVVDFGSATYDDEHHSTLVSTRHYRAPEVILX

>gi568815593r:178612063_178827128|GENSCAN_predicted_CDS_1|1212_bp
atggagacctccctgacccccatggccttgcccctggtgcgcaggctgatgtgtccaggc
tcagataagggcctgcgtctggggagagaggagggttcactagccacccccatagagcat
cacgtggaccagggagcagtgcatgtagaagacccagcagaagctctggcaggtattaaa
caccagcagctggcggccgccatcattgtcacatccatcatcatctccaccgtgaccatc
gtcacaaaggctgcctgcagatgggtgtgtgttattcacaatagccaagatatggaaaca
accgacatgtccatcgacggaggaatggatgaagaagcatgtggatctgacaacccagat
ggctactacgtgactgtcagggctccgactttgaccctaatatttctcatgttacatact
tacacgggggaactgcctgagggtcctcagaactgcagaataccttatttgagatgcggc
attccaaaagaactcactgtcctgattgggatagcagagaaagctggggacatgaaagct
atcgtggaagtcacaagcggaagaggagatctcatagtagcacacaagagaacaggcatt
gtaaaccacatcaccagtttaaagaatctgattgatgaaatcgtggacactttgggtgaa
ggagcctttggcaaagttgtagagtgcattgatcatggcatggatggcatgcatgtagca
gtgaaaatcgtaaaaaatgtaggccgttaccgtgaagcagctcgttcagaaatccaagta
ttagagcacttaaatagtactgatcccaatagtgtcttccgatgtgtccagatgctagaa
tggtttgatcatcatggtcatgtttgtattgtgtttgaactactgggacttagtacttac
gatttcattaaagaaaacagctttctgccatttcaaattgaccacatcaggcagatggcg
tatcagatctgccagtcaataaattttttacatcataataaattaacccatacagatctg
aagcctgaaaatattttgtttgtgaagtctgactatgtagtcaaatataattctaaaatg
aaacgtgatgaacgcacactgaaaaacacagatatcaaagttgttgactttggaagtgca
acgtatgatgatgaacatcacagtactttggtgtctacccggcactacagagctcccgag
gtcattttggnn

>gi568815593r:178612063_178827128|GENSCAN_predicted_peptide_2|307_aa
MIVILPTETTINIQKMEQENTAQGSEKPSVQSVKPWSDQEIRSFLQEWEFLEREVYRVKK
KYHIVSKAIAQRLKQRGINKSWKECLQMLISLQDLYFTIQEANQRPRCQPLPCPYGEALH
RILGYRWKISVFSVIILRTLFVDLFRMDMALGLGEVTSKDSGPPCADVVNLAPPEHPPQA
YGVPIVFQEPMWAPTPVIYVENPQLLNTSVPTTHLDPGNDQRMGSGTRWAHENDSLLIQR
RYWNTSDWGKEDMCVTQERSCSSQVAVKKGRNEKRTKQNFYSSYYHMDTSTHILILPVTT
DLCSSVQ

>gi568815593r:178612063_178827128|GENSCAN_predicted_CDS_2|924_bp
atgatagtaatacttcccactgaaactaccataaacatccagaaaatggagcaggaaaac
acagcccagggatcagaaaagccctcagtccagtcagttaaaccttggagtgaccaggaa
atccggagtttcctgcaagaatgggaatttcttgaacgtgaggtgtacagggtgaagaag
aagtatcacatagtatcaaaagcaattgctcagcgtctcaagcagaggggtatcaacaag
agctggaaggaatgtctccagatgctaataagcttgcaggacttatacttcactattcag
gaggccaaccagaggccaaggtgccaacccttgccatgtccttatggtgaggccctgcac
aggattctggggtacagatggaagatcagcgtcttctcagtaataattctgaggactttg
ttcgtggacttgttcagaatggacatggccctggggctgggtgaggtcacaagcaaggat
tcaggtcctccctgtgcagatgtggttaacctcgcacctcccgagcacccgccccaggcc
tatggcgttcccatagtctttcaggagccgatgtgggccccaacacctgtgatctatgtg
gaaaatcctcagctgctgaacacgtctgttccaactacacatctggacccgggaaatgac
cagagaatgggttccgggacccgctgggcccacgagaatgacagtttgctcattcagcgc
aggtactggaatacctcagactggggtaaagaagacatgtgtgttacacaggaacggagc
tgcagctcacaagtagcagtgaaaaagggaagaaatgaaaagagaacaaaacagaatttc
tacagctcctattaccacatggacacaagtacccacatcctcatccttcctgttaccaca
gatctgtgctcttctgtacagtaa

>gi568815593r:178612063_178827128|GENSCAN_predicted_peptide_3|682_aa
MQVSSRGLHFPAASAAAPPLLVPGAPRVPAGAEELSGVGRALALVGSAGRCCHCGSSVPS
ICLLETAPSSRESQKEDMAAGQREARPQVSLTFEDVAVLFTRDEWRKLAPSQRNLYRDVM
LENYRNLVSLGLPFTKPKVISLLQQGEDPWEVEKDGSGVSSLGSKSSHKTTKSTQTQDSS
FQGLILKRSNRNVPWDLKLEKPYIYEGRLEKKQDKKGSFQIVSATHKKIPTIERSHKNTE
LSQNFSPKSVLIRQQILPREKTPPKCEIQGNSLKQNSQLLNQPKITADKRYKCSLCEKTF
INTSSLRKHEKNHSGEKLFKCKECSKAFSQSSALIQHQITHTGEKPYICKECGKAFTLST
SLYKHLRTHTVEKSYRCKECGKSFSRRSGLFIHQKIHAEENPCKYNPGRKASSCSTSLSG
CQRIHSRKKSYLCNECGNTFKSSSSLRYHQRIHTGEKPFKCSECGRAFSQSASLIQHERI
HTGEKPYRCNECGKGFTSISRLNRHRIIHTGEKFYNCNECGKALSSHSTLIIHERIHTGE
KPCKCKVCGKAFRQSSALIQHQRMHTGERPYKCNECGKTFRCNSSLSNHQRIHTGEKPYR
CEECGISFGQSSALIQHRRIHTGEKPFKCNTCGKTFRQSSSRIAHQRIHTGEKPYECNTC
GKLFNHRSSLTNHYKIHIEEDP

>gi568815593r:178612063_178827128|GENSCAN_predicted_CDS_3|2049_bp
atgcaggtgtcctctcgtggactccatttcccagcggcctcagcggctgccccgcccctc
ctggtccccggcgcgccgcgggtgccagctggcgccgaggaactcagcggcgtggggcga
gccctggccctggtgggctcagcgggtcgctgctgccactgcggctccagcgtcccctcc
atctgccttctggagactgcgccgtcctcccgggagagccagaaagaggacatggctgct
gggcagcgggaagcgaggccccaggtgtcactgacgtttgaggatgtggctgtgctgttt
acccgagatgagtggagaaagctggccccttctcagagaaacttgtaccgggatgtgatg
ctggagaactataggaacctggtctcactggggctcccatttaccaaaccaaaagtgatc
tccctgttgcagcaaggagaagatccctgggaggtggagaaagacggttctggcgtctcc
tctctaggatcgaagagcagtcataaaaccacaaagtcaacgcaaacacaagactcttca
tttcagggactgatactgaaaagatccaacaggaatgtaccttgggatttgaaattagaa
aagccttacatatatgaaggcagattagagaaaaagcaggataaaaagggaagttttcag
atagtttcagccacccacaaaaaaatccccactatagaaagaagccataaaaatactgaa
ttgagccaaaacttcagcccaaagtcagtgcttattaggcaacagatacttcccagagaa
aaaacaccaccaaaatgtgaaatacaaggaaacagcctcaaacagaattcacaattactt
aatcaaccaaaaattacagcagataaacgctataaatgtagtctgtgtgaaaaaaccttc
attaacacttcatcccttcgtaaacatgagaaaaaccatagtggagagaaactatttaag
tgtaaagaatgttcaaaagcctttagccaaagttcagctcttattcaacatcaaataacg
catactggagagaaaccctacatatgtaaagaatgtgggaaagcctttactctcagtaca
tccctttataaacatctaagaacccatactgtggagaaatcctacagatgtaaagaatgt
ggtaaatccttcagccgaaggtcaggcctttttatacatcaaaaaattcatgctgaagaa
aacccttgtaagtataatccgggtaggaaggcatctagttgcagcacatccctttctgga
tgtcaaagaattcattctagaaagaagtcctacttatgtaatgaatgtggcaacaccttt
aagtctagctcatcccttcgttatcatcagagaattcacactggagagaagccttttaaa
tgtagtgaatgtgggagagccttcagccagagtgcctctcttattcaacatgaaagaatt
cacaccggagaaaagccctatagatgcaatgaatgtgggaaaggctttacttctatttca
cgacttaatagacaccgaatcattcatactggagagaagttttataattgtaatgaatgt
ggtaaagccttaagctcccactcaacacttattattcacgagcgaattcatactggagaa
aaaccatgtaaatgtaaagtatgtggaaaagccttcagacagagttcagctctcattcaa
catcagagaatgcatactggagaaagaccctataaatgtaacgagtgtgggaaaacattc
aggtgtaactcatcacttagtaatcaccagagaattcatactggagagaaaccatatcga
tgtgaggaatgtgggatatcttttggccaaagttcagctcttattcagcatcgaaggatt
catacaggagaaaaaccctttaaatgtaatacatgtggaaaaacttttagacaaagctca
tcacgtattgcacatcagagaattcatactggagagaaaccctatgaatgtaatacatgt
gggaaacttttcaaccataggtcatcccttactaatcattataaaattcatatcgaagag
gacccctag

>gi568815593r:178612063_178827128|GENSCAN_predicted_peptide_4|52_aa
MKVMVMVVVMVMMVVVVMVGVVVMRELTFLFDGYAFSLLSSVTTRGEDLLTK

>gi568815593r:178612063_178827128|GENSCAN_predicted_CDS_4|159_bp
atgaaggtgatggtgatggtggtggtgatggtgatgatggtggtggtggtgatggtgggg
gtggtggtgatgagagagctaacctttctctttgatggttacgctttcagcctgctttcc
agtgtcaccacacggggtgaggatcttctcacaaagtag

>gi568815593r:178612063_178827128|GENSCAN_predicted_peptide_5|260_aa
MLEIFGALLQEESLLLRQMTSRVAKRQRCAFDDGQPVPLSVDDQGLSLPLATLASQDVAR
SFLRSTQRCLQMLLLTPSALAALGPALCEFLGPCWYQGSWRLLQHQPEDRGRHHARLESC
GVALTFSRFPVTARSTPRFGSLETCNIVDSFEEVEDSLYVPQYNKYGEERVIVFLKTASG
HAFQPDLVKRICDAIRVGLSVRHVPSLILETKGIAYTLSGNKVEVAVKQIIARKAMEQRG
AFSNPEALHLYWDIPELNGF

>gi568815593r:178612063_178827128|GENSCAN_predicted_CDS_5|783_bp
atgctggaaatctttggggccttacttcaggaggagagcctgctgctaaggcagatgact
tctcgtgttgcaaagcggcagagatgcgcttttgatgatggccagccagttcccctcagt
gtggatgatcaagggctgagcctgcccctggccactcttgcttcccaagacgtggctcgt
tctttcctgcgctccactcagaggtgtctccagatgctcctgttgacccccagtgccctg
gccgcacttggtcccgccctctgtgaattcctgggtccttgctggtatcagggctcatgg
cgactgctgcagcatcaacccgaagaccgggggcgtcatcatgctcggctggagagctgc
ggtgtagccctgactttttctcgctttccagtgacggcacgctcaaccccgcggttcggc
agcctggaaacctgtaacatagtggactcctttgaggaggtggaggacagcctgtatgtc
ccccagtataacaagtacggggaagagagggtgatcgtcttcctgaagacagcctctggg
cacgccttccagcctgacttggtgaagaggatctgtgacgccatccgcgtgggcttgtct
gtgcggcatgtgcccagcctcatcctggaaaccaagggcatcgcgtacacgctcagtggc
aataaagtggaagttgccgtcaaacagatcatcgctcgaaaagccatggagcaacgaggt
gctttctcgaaccccgaggccctgcatctgtactgggacatccctgagctgaatggcttc
tga

>gi568815593r:178612063_178827128|GENSCAN_predicted_peptide_6|132_aa
MLSQGSLWMWPLPCLGERLVQFGEAGLQAVAGTGSQWFRALTLSHASVQRPLQYSLEIRR
GMSARSILVTRAKWLSVLEEKAVKPGTDITSCFMGQNISLPVYKGEIQAWNLGMAVDAWN
EEGDGSANCFFL

>gi568815593r:178612063_178827128|GENSCAN_predicted_CDS_6|399_bp
atgctgtcgcagggctccctgtggatgtggcctttaccctgcctgggagagcgtcttgtg
cagtttggcgaggcagggctccaggcagttgcaggcaccgggtcccaatggtttagggcc
ctgacgctgtctcatgcttcggtgcagcgacccctacagtactcgctagaaataagacgt
ggcatgagtgcccgcagcatcctggtaaccagggcgaagtggctgtcggtgctggaagag
aaggccgtgaagccgggcaccgacatcacctcctgcttcatgggccagaatatttctctt
cctgtgtataaaggggagattcaggcctggaacctgggcatggccgtggatgcgtggaat
gaggaaggtgatggctccgccaactgtttcttcctgtga

>gi568815593r:178612063_178827128|GENSCAN_predicted_peptide_7|162_aa
MAAVDNAILCKCWNFAESRFQALSLLNTKSFTFRFWHLPHPPLREGTSTKAENSGDAPSS
VEGSHGSASDPKEPSWCCLSLVLGTASWYLPYPVNQVPEHVGHGHQGEPSYKTTATPVAR
MDTIPFRIIQPTCKDRRGVASAGTRQLPPQLPLSFLCPWKTT

>gi568815593r:178612063_178827128|GENSCAN_predicted_CDS_7|489_bp
atggctgcagttgacaacgccatactgtgcaagtgctggaactttgctgagagtcgattt
caggcactttcattgctaaacacaaaaagcttcaccttccgcttctggcacctcccacat
cctcctcttagagaggggacatcaacaaaagcagagaattccggagacgccccgagctcg
gtagaaggcagccacggctctgcatccgatcccaaggagccttcctggtgctgcctatcc
cttgttctgggcacagcatcttggtacctaccctatcctgtcaaccaggtcccagagcat
gttgggcacgggcaccagggggagccatcgtacaagaccacggccactcctgtggccaga
atggacaccatcccgttccgcatcatccagcccacctgcaaagacaggaggggtgtggct
tcagcaggcaccaggcagctccccccgcagctgcccctcagcttcctgtgtccctggaaa
accacctaa

>gi568815593r:178612063_178827128|GENSCAN_predicted_peptide_8|116_aa
MVPSMARVLRTQRQAGVSGFFSPGYKPRSAFGWQRDVGAWLITREKGEPPKSASARKEIG
DLLGLLLVASEWHVDQGTLIQHRTEHLLHSNMTSGDILLCYITVKASTGTSLCYIQ

>gi568815593r:178612063_178827128|GENSCAN_predicted_CDS_8|351_bp
atggtgccctcgatggccagggtactgagaactcaaaggcaggcaggagtgtcagggttt
ttctctccaggctacaagccacgctcagcttttgggtggcagagggacgtgggggcatgg
ctcatcaccagggagaagggggagcctccaaagtctgcttctgccaggaaagaaattggg
gatctgctggggctgcttctggtagcgtctgagtggcatgtggaccagggcaccctcatc
cagcatcggacggagcacctgctgcacagcaacatgaccagcggtgacatccttctgtgc
tacatcacggtaaaggcttccacaggcaccagcctgtgctacatccagtga

>gi568815593r:178612063_178827128|GENSCAN_predicted_peptide_9|79_aa
CILPHSLYPDLNVKPKTIKTPDNSIGNTIQDIGMDEDFMRKTPKATATKAKFDEWDLIKL
KSFCVAEETISTVKRQPIE

>gi568815593r:178612063_178827128|GENSCAN_predicted_CDS_9|240_bp
tgtatattaccacatagtctttatccagatttaaatgtaaaacccaaaaccataaaaacc
cctgacaacagcataggcaataccattcaggacataggcatggacgaagatttcatgaga
aagacaccaaaagcaacggcaacaaaagccaaatttgacgaatgggatctaattaaactg
aagagcttctgcgtagcagaagaaactatcagcacagtaaagaggcaacctatagaatag