GENSCAN 1.0	Date run:  4-Nov-116	Time: 21:08:48

Sequence gi568815581r:11877960_12092829 : 214870 bp : 41.11% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   2119   2241  123  1  0   81  107   125 0.952  12.48
 1.02 Intr +   3250   3454  205  1  1   57  100   258 0.999  22.18
 1.03 Intr +   5627   5791  165  1  0   82   93   158 0.999  14.94
 1.04 Intr +   8866   9006  141  0  0   79   57   197 0.741  15.33
 1.05 Intr +  13818  13988  171  2  0  123   98   142 0.992  17.92
 1.06 Intr +  16415  16537  123  1  0   43   86   156 0.716  10.76
 1.07 Intr +  24760  24953  194  0  2   44   58   239 0.054  13.87
 1.08 Intr +  27702  27850  149  0  2   80  100   115 0.909  10.86
 1.09 Intr +  45855  45982  128  1  2  116   91    82 0.874  10.78
 1.10 Intr +  51907  52134  228  0  0   68   96   237 0.671  19.64
 1.11 Intr +  53998  54246  249  0  0   41   98    96 0.488   2.61
 1.12 Intr +  55921  56112  192  0  0   94   94   140 0.915  13.97
 1.13 Intr +  59393  59563  171  1  0   61   93   116 0.877   8.62
 1.14 Intr +  64344  64526  183  2  0   94  105   186 0.804  19.96
 1.15 Intr +  72451  72529   79  0  1   89   56    14 0.698  -3.49
 1.16 Term +  74833  74966  134  2  2  141   55    95 0.287   8.77
 1.17 PlyA +  76083  76088    6                               1.05

 2.00 Prom +  78236  78275   40                              -5.95
 2.01 Init +  80569  80655   87  0  0   21   81   132 0.265   6.49
 2.02 Intr +  83908  84297  390  0  0  105  103   392 0.379  36.39
 2.03 Intr +  91341  91528  188  2  2   94   39   215 0.353  14.77
 2.04 Intr +  91563  91662  100  0  1   24  107    20 0.177  -3.31
 2.05 Intr +  94194  94376  183  2  0   10  131    89 0.303   4.46
 2.06 Term +  96933  97415  483  2  0   74   33   255 0.813  12.36
 2.07 PlyA +  98153  98158    6                               1.05

 3.07 PlyA -  98527  98522    6                               1.05
 3.06 Term - 100785  99998  788  1  2  105   42   599 0.999  49.50
 3.05 Intr - 105445 105338  108  2  0   74   95    70 0.573   5.64
 3.04 Intr - 106238 106154   85  2  1  105   78    56 0.739   4.77
 3.03 Intr - 112591 112503   89  2  2   78   99    12 0.729   0.07
 3.02 Intr - 113204 113015  190  2  1   51   66   202 0.884  12.54
 3.01 Init - 114870 114484  387  0  0   68   94   468 0.623  41.05
 3.00 Prom - 118591 118552   40                              -5.55

 4.02 PlyA - 119765 119760    6                               1.05
 4.01 Sngl - 133093 132830  264  1  0  111   49   161 0.448   9.46
 4.00 Prom - 137833 137794   40                              -5.25

 5.04 PlyA - 138347 138342    6                               1.05
 5.03 Term - 139567 139311  257  2  2   42   47   178 0.838   3.86
 5.02 Intr - 142782 142621  162  1  0   32  107   131 0.914   8.43
 5.01 Init - 143239 142987  253  1  1   40    7   282 0.401  10.85
 5.00 Prom - 155323 155284   40                              -5.35

 6.05 PlyA - 155501 155496    6                               1.05
 6.04 Term - 171428 171264  165  2  0   50   32   136 0.479   1.13
 6.03 Intr - 185047 184985   63  1  0   66  116    33 0.013   1.90
 6.02 Intr - 191300 191264   37  1  1   76  108    24 0.037   0.55
 6.01 Intr - 197073 196900  174  2  0   67  105   104 0.312   8.13

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init -  22586  22581    6  2  0   98   65     0 0.879  -0.37
S.002 Term -  39723  39564  160  2  1   95   43   123 0.976   4.93
S.003 Intr +  90621  90676   56  1  2   84  103    55 0.899   4.38
S.004 Term - 116993 116928   66  2  0  127   39   115 0.963   7.46


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815581r:11877960_12092829|GENSCAN_predicted_peptide_1|878_aa
XYLQIIEQALEAGAVVLIENLEESIDPVLGPLLGREVIKKGRFIKIGDKECEYNPKFRLI
LHTKLANPHYQPELQAQATLINFTVTRDGLEDQLLAAVVSMERPDLEQLKSDLTKQQNGF
KITLKTLEDSLLSRLSSASGNFLGETVLVENLEITKQTAAEVEKKVQEAKVTEVKINEAR
EHYRPAAARASLLYFIMNDLSKIHPMYQFSLKAFSIVFQKAVERAAPDESLRERVANLID
SITFSVYQYTIRGLFECDKLTYLAQLTFQILLMNREVNAVELDFLLRSPVQTGTASPVEF
LSHQAWGAVKVLSSMEEFSNLDRDIEGSAKSWKKFVESECPEKEKLPQEWKNKTALQRLC
MLRAMRPDRMTYALRDFVEEKLGSKYVVGRALDFATSFEESGPATPMFFILSPGVDPLKD
VESQGRKLGYTFNNQNFHNVSLGQGQEVVAEAALDLAAKKGHWVILQNIHLVAKWLSTLE
KKLEEHSENSHPEFRVFMSAEPAPSPEGHIIPQGILENSIKITNEPPTGMHANLHKALDN
FTQPAPYKRSCVRTLKATLSFQDTLEMCSRETEFKSILFALCYFHAVVAERRKFGPQGWN
RSYPFNTGDLTISVNVLYNFLEANAKVPYDDLRYLFGEIMYGGHITDDWDRRLCRTYLGE
FIRPEMLEGELSLAPGFPLPGNMDYNGYHQYIDAELPPESPYLYGLHPNAEIGFLTQTSE
KLFRTVLELQPRDSQARDGAGATREEKVKALLEEILERVTDEFNIPELMAKVEERTPYIV
VAFQECGRMNILTREIQRSLRELELGLKRWNLSLLPRLECGGVIMAQEIFPPQPRLYESG
TAAVTKYRRRCGLNNRYLFLTVVEAQSLSSSTGKFGFW

>gi568815581r:11877960_12092829|GENSCAN_predicted_CDS_1|2637_bp
nnctaccttcaaatcatagagcaggccctggaagctggagctgtggtgctgattgaaaat
ctagaggagtccattgatcctgttctgggacccctgcttgggagagaagtcattaaaaaa
ggacgattcattaaaattggagacaaagaatgtgaatacaatcccaagttccggctcatc
ctccacaccaagctggctaatcctcactaccagcctgagctgcaggctcaggccaccctg
atcaacttcaccgtgaccagggatggcctggaggaccagttgctggccgctgtggtcagc
atggagaggccagacttggagcagctgaagtccgatctcacaaagcagcagaatggattc
aaaattaccctgaaaacgttggaagacagtcttctctctcgcctctcctccgcctctggg
aacttcctgggagaaacagtgctggtggaaaacctagagatcaccaagcagactgctgcc
gaagttgagaaaaaggtccaggaggccaaggtgactgaagtgaaaatcaacgaggcccga
gagcactaccggccagcagctgccagggcctcactgctctacttcatcatgaacgacctc
agcaagatccatccaatgtaccagttttctctcaaggccttcagtatcgtcttccagaag
gctgtggagagggctgctcctgacgaaagcctcagggagcgggtggccaacctaatagac
agcataaccttctctgtgtaccagtacaccatccgcgggctctttgagtgtgataagctg
acctaccttgcccagctcacctttcagattctcctcatgaaccgagaagtcaatgcagtg
gagttggatttcctgcttcgatctccagtgcagacgggcaccgccagccccgtggagttc
ctctcccatcaggcgtggggagctgtcaaggtactttcatcaatggaagaattctctaat
ctggatcgggacatagagggatctgctaagagctggaaaaagtttgtggagtccgaatgt
cctgagaaagagaagctcccacaggagtggaagaacaagacagccctgcagcgcctctgc
atgctgagagccatgcggcccgaccggatgacctatgctttgcgagattttgttgaagag
aagttaggaagcaaatacgtggtgggaagagccctagattttgcaacctcatttgaagaa
tcgggaccagccactcctatgtttttcatcctgtctccaggggtggacccactgaaggat
gtagaaagtcaaggaagaaaacttggatacaccttcaacaatcagaactttcacaacgtg
tctttggggcaaggacaggaagtggtggctgaggctgcgctggacctcgctgccaagaaa
ggtcactgggttattttgcagaacattcacctggtggccaagtggctcagcaccctggag
aagaagctggaggagcacagtgagaacagccacccagagttcagggtcttcatgagtgca
gagccagcaccctcccctgagggccacatcatcccccagggcatcctggagaactccatt
aagatcaccaatgagccccccacgggcatgcatgccaacctgcacaaggccctggacaac
ttcactcagccagccccgtataagagaagttgtgtgcgaaccttaaaagcgacactctca
tttcaggacactctggagatgtgttctcgggagacggagtttaagagcatcctctttgct
ctttgttacttccatgcggtggtggcagaaagacgaaaatttgggccccagggatggaat
cgctcatacccctttaacactggagacctcactatctctgtgaatgtcctctacaacttc
ctggaggccaacgcaaaggtcccctatgatgatttgcgctacctgtttggagagatcatg
tatggaggccatatcacagatgactgggacagaagactctgcagaacctacctgggggaa
ttcattcgaccagaaatgttagaaggagaactgtctttggccccagggttcccactccca
ggcaacatggactacaatggttatcatcagtacatcgatgctgagctgcccccagaatcc
ccctacctctatggcctccacccgaacgcagagattggcttcctgacccaaacctcagaa
aagctcttccgcactgtgctggagctgcagcctcgggacagccaggccagagacggagcg
ggcgccacaagagaagaaaaggtcaaggcacttctggaagaaatattggagcgggtgaca
gacgagtttaacatcccagaactgatggccaaagtggaggagcgcaccccttacattgta
gttgccttccaggagtgtggccggatgaatatcctcaccagagagattcagcgctcactg
agggagctggagctcggcttaaagagatggaatctttctctattgcccagattggagtgt
ggtggtgtgatcatggctcaagagatcttcccacctcagccacggctgtatgagtcaggt
acagctgctgtaacaaaataccgtagacggtgtggcttaaacaacagatatttatttctc
acagttgtggaggctcaaagtctaagctcaagcaccggcaaatttggtttctggtga

>gi568815581r:11877960_12092829|GENSCAN_predicted_peptide_2|476_aa
MYNAKGKPYGKLRTLSDNEVNAGASLVTKGELTMTSHMENLQNALYFDMVPESWARRAYP
STAGLAAWFPDLLNRIKELEAWTGDFTMPSTVWLTGFFNPQSFLTAIMQSTARKNEWPLD
QMALQCDMTKKNREEFRSPPREGAYIHGLFMEGACWDTQAGIITEAKLKDLTPPMPVMFI
KAIPADKQDCRSVYSCPVYKTSQRGPTYVWTFNLKTKENPSKFSILQSHRENKKAGLGGC
LEGQVGEGSPQTLRTPVWWSLHTDAHEIWCRDSDRGTSLGRSILRPPALCSMRKIHLRPQ
VLRLISPRNISPISNPHALKGLKPVITRLLQHGLLKPINSPYNSPILPVLKPDKPYKLVQ
DLCLINQIVLPIHPMMPNPYTLLSSIPPSTIHYSVLDLKRAFFTTPLYLSSQPLFAFTWT
DPDTHQVQQITWAVLPQGFTDSPHYFSQAQISSSSVTYLGIILVKTHELSLLIVSD

>gi568815581r:11877960_12092829|GENSCAN_predicted_CDS_2|1431_bp
atgtacaacgcaaagggcaaaccctacggtaaactacggactctgagtgataatgaggtg
aatgcaggtgcatcacttgtaacaaagggggagctgactatgaccagccacatggagaac
ttacagaatgccctgtacttcgatatggtgccagagtcctgggctagacgagcctaccct
tccacagcaggcctggcagcctggtttccagacctcctcaacagaatcaaggagctagag
gcttggacgggtgactttacaatgccctccactgtgtggctgacaggcttcttcaacccc
cagtcgttcctgactgccatcatgcagtccacggctcgcaagaatgagtggccactggac
cagatggccctgcaatgtgacatgacgaagaagaacagagaagagtttaggagtcctcct
cgggaaggggcctacatccatggcctcttcatggaaggtgcctgctgggacacacaggct
gggatcattacagaggcaaagctgaaggatctgacaccccctatgcctgtgatgttcatc
aaggccattcctgcagataagcaggactgccgcagtgtctattcctgtcctgtgtacaag
actagtcagcggggacccacctacgtgtggactttcaacctgaagactaaggaaaaccca
tccaaatttagcatcctgcagagccaccgagaaaataaaaaagctgggcttggaggctgc
ctagagggacaggtgggtgaagggtcaccacagacacttagaacgcctgtttggtggtct
cttcacacggacgcacatgaaatttggtgccgtgactcggatcgggggacctcccttggg
agatcaatcctccgtcctcctgctctttgctccatgagaaagatccacctacgacctcag
gtcctcagactgatcagcccaagaaacatctcaccaatctcaaatccgcatgctttgaaa
ggattaaagcctgttatcactcgcctgctacagcatggccttttaaagcctataaactct
ccttacaattcccccattttacctgtcctaaaaccagacaagccttacaagttagttcag
gatctatgccttatcaaccaaattgttttgcctatccaccctatgatgccaaacccatat
actctcctatcctcaatacctccctccacaatccattattctgttctggatctcaaacgt
gctttctttactactcctttgtacctgtcatcccagcctctcttcgctttcacttggact
gaccctgacactcatcaggttcagcaaattacctgggctgtactgccgcaaggcttcaca
gacagcccccattacttcagtcaagcccaaatttcatcctcatctgttacctatctcggc
ataattctcgtaaaaacacacgagctctccctgctgatcgtgtctgattaa

>gi568815581r:11877960_12092829|GENSCAN_predicted_peptide_3|548_aa
MPVDLGQALGLLPSLAKAEDSQFSESDAALQEELSSPETARQLFRQFRYQVMSGPHETLK
QLRKLCFQWLQPEVHTKEQILEILMLEQFLTILPGEIQMWVRKQCPGSGEEAVTLVESLK
GDPQRLWQWISIQVLGQDILSEKMESPSCQVGEVEPHLEVVPQELGLENSSSGPGELLSH
IVKEESDTEAELALAASQPARLEERLIRDQDLGASLLPAAPQEQWRQLDSTQKEQYWDLM
LETYGKMVSGGISHPKSDLTNSIEFGEELAGIYLHVNEKIPRPTCIGDRQENDKENLNLE
NHRDQELLHASCQASGEVPSQASLRGFFTEDEPGCFGEGENLPEALQNIQDEGTGEQLSP
QERISEKQLGQHLPNPHSGEMSTMWLEEKRETSQKGQPRAPMAQKLPTCRECGKTFYRNS
QLIFHQRTHTGETYFQCTICKKAFLRSSDFVKHQRTHTGEKPCKCDYCGKGFSDFSGLRH
HEKIHTGEKPYKCPICEKSFIQRSNFNRHQRVHTGEKPYKCSHCGKSFSWSSSLDKHQRS
HLGKKPFQ

>gi568815581r:11877960_12092829|GENSCAN_predicted_CDS_3|1647_bp
atgcccgttgacttggggcaggccctaggcctgctgccatcgctggcgaaggccgaggac
tcccagttctcagaatcagatgctgcccttcaagaggaactctccagccctgagaccgca
cgccagcttttcaggcagttccgttaccaggtgatgtctgggcctcatgagaccttgaag
caacttcggaagctctgtttccagtggctacagccagaggttcacaccaaagagcagatc
ctagagatcctcatgttggagcagtttctgaccatcctgcctggggagatccagatgtgg
gtgcggaaacagtgtccaggaagtggagaagaggcagtgacccttgtggaaagcttgaag
ggggacccccagagactgtggcaatggatcagtatccaggttctaggacaggacatctta
tcagagaagatggaatctccaagctgccaagtgggggaagtggagccccatcttgaagtg
gtgcctcaggagttgggacttgagaattcatcctcagggcctggggagcttctgagccac
atcgtgaaagaggaatctgacacagaagcagaactagccctggctgcctcccagcctgcc
cgactggaggaaaggctgatcagagaccaggacctcggagcctcactgctcccagcagca
cctcaggaacagtggagacaactggattccactcaaaaggagcaatactgggatctcatg
ctggagacctatgggaaaatggtctcaggaggcatttcccatcccaaatctgacctgact
aattcaatagaatttggggaagagctggcaggaatataccttcatgtcaatgagaagatc
ccaagacccacctgcataggagatagacaagagaatgacaaggagaacctaaatttggag
aatcacagggaccaggagctcctgcatgcttcctgtcaagcttcaggagaggttccttct
caggcttccttgaggggcttcttcactgaggatgagccaggatgctttggagaaggagag
aatctccctgaggctctgcaaaacattcaggatgagggaacaggggaacagctgtctcct
caagaaaggatttctgagaaacaactaggtcagcatttgcctaatcctcattcaggagaa
atgtccaccatgtggcttgaggagaagagagagacctcccagaaggggcagccaagagcc
cccatggcccagaagctccccacctgcagggagtgtgggaagaccttttataggaattct
cagcttatttttcaccaaagaactcacaccggagagacatactttcagtgcaccatctgc
aaaaaagcctttctgcggagttcagactttgtgaagcatcagagaactcacacgggagag
aagccctgtaaatgtgattactgtgggaaaggctttagtgacttctcaggattgcgccac
cacgagaaaatccacacaggagagaaaccctataaatgtcctatctgtgagaaaagtttc
attcagagatcaaactttaatagacatcagagggttcacactggagagaaaccttataaa
tgttcgcactgtgggaaaagtttcagctggagctcgagccttgacaaacatcaaagatcc
cacttaggaaagaagccctttcaatag

>gi568815581r:11877960_12092829|GENSCAN_predicted_peptide_4|87_aa
MAKLEESTMFPSMLLAFVVNKQVKGKILAKRINVCIGHVKHVKSQDSFLKQVKENYQKTK
EDKEKSTWGSTEVPACTAQKSTLRENQ

>gi568815581r:11877960_12092829|GENSCAN_predicted_CDS_4|264_bp
atggctaaactggaagagtctacaatgttccccagcatgctgttggcatttgttgtaaac
aaacaagttaagggcaagattcttgccaagagaattaatgtgtgtattgggcatgttaag
cacgtgaagagccaagatagcttcctgaaacaagtgaaggaaaattatcagaaaactaaa
gaagacaaagagaaaagtacctggggttcaactgaagtgccagcctgcactgcccagaaa
agcacacttcgtgagaaccagtag

>gi568815581r:11877960_12092829|GENSCAN_predicted_peptide_5|223_aa
MRAGARIQAGPEAAGSGAGSRGGREGEAGGCRGFLSRVRGRPLGQAATTRVAALGGWDLG
AAAFLTLHAADGRVAWRRGPYGAGEPDAQPGPDAELQNRPALGARPVKQTAVLDQGCGPA
GPKVVCRIKGGPAFVRKEGPQFQPLGKKQGQTPLFGWNSHQIFHIALAIVFEQNAHPQIA
KGSGPGHPVTDVASSGRELQAVQVSGCHSSTEFNWKYRACEKL

>gi568815581r:11877960_12092829|GENSCAN_predicted_CDS_5|672_bp
atgcgggccggagcccggatccaagccgggccggaggcggccgggagcggggcgggaagc
cggggagggagagagggagaagccggcggctgccgtggcttcctcagccgggtccggggg
cgtccgctggggcaggccgcgacgacgcgggttgccgcgctagggggctgggatctcggc
gcggccgcgttccttaccctgcatgctgctgacggccgggtggcctggcgccggggaccc
tacggggccggggagcccgacgcgcagcccgggccagatgctgagctgcagaaccgcccg
gctctgggtgcgcgacctgtgaagcagacagctgtcttggaccagggctgcgggcccgcg
gggcctaaagtggtttgcagaattaaaggtgggcctgcatttgtgcggaaagaaggaccc
caatttcagcctctgggaaagaaacaaggtcagacacctctatttggatggaacagtcac
cagatattccatatagccttagcaattgtctttgagcaaaacgcccaccctcaaattgcc
aagggctcaggaccaggccacccagtgacggatgttgcctcttcaggcagagagctgcaa
gctgtgcaggtttctggatgtcattcgagcactgaatttaattggaaatacagggcctgt
gagaaactttga

>gi568815581r:11877960_12092829|GENSCAN_predicted_peptide_6|146_aa
XECQCGTSTCPTMKYQETDLPSYLKQLKKTDRIYRQSGRHWKSSGNKGQQTLKDRKYVRP
QFPVAAKTSSQNERVVSRLKESTESKLQGKRKGTPIDTTGYSLEPPHNKEKPGTAVYKSF
IEYLQEYWYLTYKYSEHHIAERGAVI

>gi568815581r:11877960_12092829|GENSCAN_predicted_CDS_6|441_bp
nntgagtgtcaatgtggcacctccacttgtcctactatgaagtatcaggagacagactta
ccctcatacctaaaacaactgaaaaaaacagacagaatatataggcaatctggaagacac
tggaaatcatcaggaaacaaagggcagcagacactgaaagaccggaaatatgtaaggccc
caatttccagtggcagctaaaacctcttcccaaaatgaaagagtggtttctagattgaaa
gagtccactgagagcaaactacaaggaaaaagaaagggaacacccattgacaccacaggg
tattccctagaaccaccacacaataaagagaaacctggaactgcagtgtacaagtcattc
atagaataccttcaagaatattggtatttgacttacaagtattcagaacatcacatcgca
gagaggggagctgtcatttaa