GENSCAN 1.0	Date run:  4-Nov-116	Time: 07:47:31

Sequence gi568815591r:135086154_135311502 : 225349 bp : 43.48% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.04 PlyA -    163    158    6                               1.05
 1.03 Term -   4031   3976   56  0  2   82   47    39 0.530  -3.08
 1.02 Intr -   4865   4748  118  2  1  103   84    91 0.777  10.24
 1.01 Init -  20818  20414  405  1  0   76   32   112 0.052   1.01
 1.00 Prom -  22484  22445   40                              -3.46

 2.00 Prom +  41697  41736   40                              -2.56
 2.01 Init +  42703  43291  589  0  1   39   78   391 0.041  28.59
 2.02 Intr +  57864  57942   79  1  1   66   55    99 0.022   3.01
 2.03 Intr +  69062  69083   22  2  1   78   96    14 0.002  -1.25
 2.04 Term +  78265  78846  582  0  0   81   43   318 0.081  21.10
 2.05 PlyA +  79122  79127    6                              -1.75

 3.03 PlyA -  79697  79692    6                               1.05
 3.02 Term -  80718  80458  261  0  0   84   49   144 0.992   5.63
 3.01 Init -  82725  82633   93  0  0   64   86   171 0.173  14.88
 3.00 Prom -  90305  90266   40                              -3.46

 4.14 PlyA -  90840  90835    6                               1.05
 4.13 Term - 100162  99998  165  1  0  134   45   244 0.999  22.62
 4.12 Intr - 101016 100819  198  0  0   55   88   242 0.985  20.45
 4.11 Intr - 102392 102280  113  0  2   57  102   201 0.875  18.50
 4.10 Intr - 103299 103191  109  0  1   75   64   225 0.989  18.66
 4.09 Intr - 107246 107078  169  1  1   84   96   196 0.937  19.95
 4.08 Intr - 107519 107425   95  2  2   93   66   123 0.999   9.36
 4.07 Intr - 108473 108417   57  2  0  119   81    -8 0.509   0.68
 4.06 Intr - 108931 108781  151  0  1   98  105   109 0.998  13.76
 4.05 Intr - 110184 109991  194  0  2   83   94   136 0.999  11.99
 4.04 Intr - 111998 111840  159  2  0   70   80   140 0.999  11.58
 4.03 Intr - 118280 118115  166  1  1   83  115    87 0.517  10.86
 4.02 Intr - 119905 119775  131  1  2   33   74   193 0.997  11.89
 4.01 Init - 120035 119949   87  2  0   63   72    60 0.912   1.23
 4.00 Prom - 120596 120557   40                              -6.66

 5.04 PlyA - 120729 120724    6                              -1.75
 5.03 Term - 122845 122612  234  1  0  105   49   208 0.973  14.92
 5.02 Intr - 123602 123423  180  2  0   99   51   178 0.979  15.26
 5.01 Init - 125349 125227  123  0  0   95   80   269 0.930  26.97
 5.00 Prom - 127037 126998   40                              -5.36

 6.00 Prom + 134736 134775   40                              -4.26
 6.01 Init + 145826 145885   60  1  0   83   99    63 0.890   8.15
 6.02 Intr + 154366 154563  198  0  0   -4   86   131 0.101   3.25
 6.03 Intr + 156628 156703   76  0  1   79   90    53 0.897   3.69
 6.04 Intr + 157173 157257   85  1  1   57  110   118 0.981   9.78
 6.05 Intr + 159135 159374  240  0  0   83   58   330 0.538  26.16
 6.06 Intr + 160264 160549  286  1  1   57   83   411 0.993  34.84
 6.07 Intr + 165643 165716   74  0  2   75   94    61 0.790   3.60
 6.08 Intr + 168961 169072  112  1  1   81   91    63 0.891   6.28
 6.09 Term + 172265 172339   75  1  0  125   38   114 0.993   7.94
 6.10 PlyA + 172834 172839    6                               1.05

 7.10 PlyA - 174211 174206    6                               1.05
 7.09 Term - 175378 175361   18  1  0  111   47     9 0.016  -2.58
 7.08 Intr - 181326 181226  101  1  2  114   78    -1 0.086   1.33
 7.07 Intr - 183961 183866   96  2  0   92   74    78 0.676   6.78
 7.06 Intr - 184167 184059  109  0  1  106   62   137 0.936  12.76
 7.05 Intr - 185287 185256   32  2  2   54   86    16 0.014  -4.15
 7.04 Intr - 188503 188448   56  0  2   94   94    90 0.503   8.82
 7.03 Intr - 191244 191069  176  0  2   88  103   149 0.474  15.14
 7.02 Intr - 202244 202085  160  1  1  133   77    23 0.128   5.69
 7.01 Intr - 221157 221018  140  0  2  103  -24   129 0.001   2.46

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Sngl +  42703  43326  624  0  0   39   47   423 0.925  29.50
S.002 Sngl +  78289  78846  558  0  0   90   43   306 0.805  22.43
S.003 Init +  84159  84267  109  2  1   86  100   101 0.868  10.03
S.004 Init + 154372 154563  192  0  0   45   86   131 0.853   7.57
S.005 Init - 184465 184418   48  1  0   86   94    55 0.914   7.09
S.006 Term - 221157 221008  150  0  0  103   50   128 0.901   8.41


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815591r:135086154_135311502|GENSCAN_predicted_peptide_1|192_aa
MDKFLDIYTLPRLNQEEIDSLNSSIVTSEIESVINSLSSKKIPGQNRFTAEFNQMYKDEL
VPFLLKLFQKAEEEGLLPNSFYEASIILIPKPGRATTIKENFRPISLVNIDAKILNKILA
NQIQQHIKKLIHHDQAQSFLTAEGAAWTPLAVLPPEKELSSWNWNYSRSMSCTRGSKVTT
TQCFIHWNLGYH

>gi568815591r:135086154_135311502|GENSCAN_predicted_CDS_1|579_bp
atggataaattcctggatatatacaccctcccaagactgaaccaggaagaaatcgattcc
ctgaacagttcaatagtgacctctgaaatagaatcagtaataaatagcttatcatccaaa
aaaatcccaggacaaaacagattcacagctgaattcaatcagatgtacaaagacgagctg
gtaccattcctactgaaactatttcaaaaagctgaggaggagggactcctccccaactca
ttctatgaagccagcattatcctgataccaaaacctggcagagccacaacaataaaagaa
aacttcaggccaatatccttggtgaacattgatgcaaaaatcctcaacaaaatacttgca
aaccaaatccagcagcacatcaaaaagctaatccaccatgatcaagcacagtccttcctc
acagctgaaggagctgcctggactccactagctgtgctccccccagagaaggagctgtca
tcttggaactggaactacagcagaagtatgtcttgcaccagggggtctaaagtcactact
acacagtgcttcatccactggaatctgggttatcactga

>gi568815591r:135086154_135311502|GENSCAN_predicted_peptide_2|423_aa
MIQEILDFDQAQQIKCFNSNLFLCNICFCKKLGSECMYFLECRHVYCKDCLKDYFEIQIR
DGQVQCLNCPEPKCPSVATTGQVKELVEAELFAYYDCLLLQSTLDLMADVVYCPHACCQL
PVMQEPGYIMGICSSCNFAFCTLCRLTYHGVSPCKVTAEKLIDLLNEYLQADKANKRLLE
QRYDKRVIQKALEEMERGEGCQRFSSPYRCEAETTFEANEAKSLYVFMGKVPRQRAVEMA
GPRPRWRDQLLFMSIIVLVIVVICLMFYALLWEAGNLTDLPNLRIGFYNFCLWNEDTSTL
QCHQFPELEALGVPRVGLGLARLGVYGSLVLTLFAPQPLLLAQCNSDERAWRLAVGFLAV
SSVLLAGGLGLFLSYVWKWVRLSLPGPGFLALGSAQALLILLLIAMAVFPLRAERAESKL
ESC

>gi568815591r:135086154_135311502|GENSCAN_predicted_CDS_2|1272_bp
atgatccaggaaatcttggactttgatcaagctcagcagataaaatgctttaatagtaat
ttgttcctgtgcaatatctgtttctgtaagaagctgggtagtgaatgcatgtacttcttg
gagtgcaggcatgtgtactgcaaagactgtctgaaggactactttgaaatccagatcaga
gatggccaggttcaatgcctcaactgcccagaaccaaagtgcccttcagtggccactact
ggtcaggtcaaagagctagtggaagcagagttatttgcctattatgactgccttctcctc
cagtccaccttggacctgatggcagatgtggtgtactgcccccacgcatgctgccagctg
cctgtgatgcaggagcctggctacatcatgggtatctgctccagctgcaattttgccttc
tgtaccttgtgcaggttgacctaccatggggtctctccatgtaaggtgactgcagagaaa
ttaatagacttactaaatgaatacctgcaagcagataaggccaataaaagacttttggaa
caaaggtatgataagagggtgattcagaaggcactggaagagatggaaagaggagaaggc
tgccagcgtttctcatctccctaccgctgtgaagcagaaacaacatttgaggctaatgag
gccaagagtctatatgtctttatgggtaaggtcccccggcagagggcagtagagatggcc
ggcccaaggcctcggtggcgcgaccagctgctgttcatgagcatcatagtcctcgtgatt
gtggtcatctgcctgatgttttacgctcttctctgggaggctggcaacctcactgacctg
cccaacctgagaatcggcttctataacttctgcctgtggaatgaggacaccagcacccta
cagtgtcaccagttccctgagctggaagccctgggggtgcctcgggttggcctgggcctg
gccaggcttggcgtgtacgggtccctggtcctcaccctctttgccccccagcctctcctc
ctagcccagtgcaacagtgatgagagagcgtggcggctggcagtgggcttcctggctgtg
tcctctgtgctgctggcaggcggcctgggcctcttcctctcctatgtgtggaagtgggtc
aggctctccctcccggggcctgggtttctagctctgggcagcgcccaggccttactcatc
ctcttgcttatagccatggctgtgttccctctgagggctgagagggctgagagcaagctt
gagagctgctaa

>gi568815591r:135086154_135311502|GENSCAN_predicted_peptide_3|117_aa
MADSPGGYKECGTNEGPQEDENGSSASGSSKSRKQEKACEQPALAGADNPEHSPPCSVSP
HTSSGSSSEEEDSGKQALAPGLSPSQRPGGSSSACSRSPEEEEEEDVLKYVREIFFS

>gi568815591r:135086154_135311502|GENSCAN_predicted_CDS_3|354_bp
atggctgacagcccaggtggctacaaagaatgtggcaccaatgaaggcccccaagaggat
gagaatggcagcagtgccagtggcagcagcaagagccgcaaacaggaaaaggcctgcgag
cagccggccctggcgggggctgataacccagagcactcccctccctgctccgtgtcgcct
cacacaagttctgggagcagcagtgaggaagaggacagtgggaaacaggcactggctcca
ggcctcagcccttcccagaggccggggggttccagctctgcctgtagcaggagccctgag
gaggaggaggaagaggatgtgctgaaatacgtccgggagatctttttcagctag

>gi568815591r:135086154_135311502|GENSCAN_predicted_peptide_4|597_aa
MGPLTLRRVALRPVGLDAMCLEIFLRRGKLFALQAEIHRLKKEEQQPEEEEALVQHKLPP
YVSNMDRLGDSELAMVCSQRNASLSQSPRVGFLSSLLPQSKKSPSRLSPAQGPPQPQSSA
KKESFGGQGTKGKDPTSGAKDGKSLLSGLATGESGWSQHRQRRLQDHGKERKELFSTTTS
QCAEKKPEASGPEAEPCPELHTEPVEPLTRASSAGPEGGGVRPEQPFIVLGQEEYGEHHS
SIMHCRVDCSGRRVASLDVDGVIKVWSFNPIMQTKASSISKSPLLSLEWATKRDRLLQFQ
WAPSRARPHGKWLPLLLLGSGVGTVRLYDTEAKKNLCEININDNMPRILSLACSPNGASF
VCSAAAPSLTSQVDFSAPDIGSKGMNQVPGRLLLWDTKTMKQQLQFSLDPEPIAINCTAF
NHNGNLLVTGAADGVIRLFDMQQHECAMSWRAHYGEVYSVEFSYDENTVYSIGEDGKFIQ
WNIHKSGLKVSEYSLPSDATGPFVLSGYSGYKQVQVPRGRLFAFDSEGNYMLTCSATGGV
IYKLGGDEKVLESCLSLGGHRAPVVTVDWSTAMDCGTCLTASMDGKIKLTTLLAHKA

>gi568815591r:135086154_135311502|GENSCAN_predicted_CDS_4|1794_bp
atgggccccttgacgctgaggcgagtggcactcagaccagtgggcttggatgcgatgtgt
ctagaaatcttcctccgcagagggaagctttttgcattgcaagctgaaatccaccgactg
aagaaagaggagcaacagccagaagaggaagaggccttggtccaacacaaattgcctcct
tatgtctccaacatggaccgcctgggggactcggaacttgccatggtgtgcagccaaagg
aatgcctccctctcccagtcacctcgtgtgggcttcctgtcctcgctgctgcctcagagt
aagaagagcccctcaaggttgtcgcctgctcagggccctcctcaacctcagagctcggcc
aagaaagagtccttcggtggtcagggcaccaagggaaaggacccgacgtccggagccaag
gatgggaagagcctcctcagcgggctggccactggggagtccggttggtcacagcaccgg
cagcggcgcctgcaggaccatggcaaggagaggaaggagcttttctccacaaccacttcc
cagtgtgcagagaagaaaccagaagccagtggcccagaggctgagccctgcccagagctc
cacacggagccagtggagccactgactcgggcatcctcggcaggccctgagggtggagga
gtccgccccgagcagccctttattgtgctgggacaggaggagtacggggaacaccactca
tccatcatgcactgcagagtggactgctctgggaggagagtcgccagcttagacgtagat
ggggtcatcaaagtgtggtccttcaaccccatcatgcagaccaaagcatcctccatttcc
aaatcaccgctgctgtctttggaatgggccaccaaacgggacagactgctgcagtttcag
tgggcgccctcccgtgccaggccccacgggaagtggcttccgctgctcttgctgggcagt
ggtgtgggaacagtgcgtctctatgacacggaagccaagaagaatctctgtgaaatcaat
atcaacgacaacatgcccagaatcctgtctcttgcgtgcagccccaacggggcctctttc
gtctgttcggcagcagctccgagcctcacttcccaggtggacttctcagcaccagacatc
ggcagcaagggcatgaaccaggttcctggcaggctgctgctgtgggacacgaaaaccatg
aagcagcagctccagttctccctggatccagaacccattgctatcaactgtacagccttc
aatcacaacgggaacctgctggtcacaggggcagctgatggcgtcatccggctgtttgac
atgcagcagcatgagtgcgcgatgagctggagggcccactacggggaggtctactctgtg
gagttcagctatgatgagaacaccgtgtacagcatcggcgaggacgggaagttcatccag
tggaacatccacaagagtggcctcaaggtatccgagtacagcctcccctcagatgccacg
ggcccctttgtgctgtctggatacagcggctacaagcaggttcaagtccccaggggccga
ctcttcgcttttgactcggagggaaattacatgctgacatgttctgccacaggcggcgtc
atctacaagctgggtggcgatgagaaggttctggagagctgcttgagcctaggtggccac
cgagcccctgtggtcaccgtggactggagcactgccatggactgtgggacctgcctcacc
gcctccatggatggcaagatcaagctgaccaccctcctggcccataaagcctga

>gi568815591r:135086154_135311502|GENSCAN_predicted_peptide_5|178_aa
MAEAVERTDELVREYLLFRGFTHTLRQLDAEIKADKEKGFRVDKIVDQLQQLMQVYDLAA
LRDYWSYLERRLFSRLEDIYRPTIHKLKTSLFRFYLVYTIQTNRNDKAQEFFAKQATELQ
NQAEWKDWFVLPFLPSPDTNPTFATYFSRQWADTFIVSLHNFLSVLFQCMHILSVAWG

>gi568815591r:135086154_135311502|GENSCAN_predicted_CDS_5|537_bp
atggcggaggccgtggagcgcactgacgagctggtccgggagtacctgctcttccgcggg
ttcacgcacacactgcggcagctggacgccgagatcaaggcggacaaggagaaggggttc
cgggtggataagattgtggaccagctgcagcagttaatgcaggtgtatgacttggctgcc
cttcgggattattggagctacttggagcgtcggctcttcagccgcttggaggatatatac
agacccacaatccacaagctgaaaaccagcctgtttcgattttatcttgtctacacaatc
cagacaaacagaaatgacaaggctcaggagttctttgcaaagcaggccacggaactccag
aaccaggctgagtggaaggattggtttgtcctgcccttcctgccatccccggacaccaac
cccacctttgctacctacttttctcgacagtgggctgacaccttcattgtgtccctgcac
aacttcctgagcgtcctgtttcagtgcatgcatatcctttcagttgcctggggctga

>gi568815591r:135086154_135311502|GENSCAN_predicted_peptide_6|401_aa
MGKIDVDKILFFNQEIRLWQLIMATPEENSNPHDRATPQLPAQLQELEHRVARRRLSQAR
HRATLAALFNNLRKTVYSQSDLIASKWQVLNKAKSHIPELEQTLDNLLKLKASFNLEDGH
ASSLEEVKKEYASMYSGNDSLLSNSFPQNGSSPWCPTEAVRKDAEEEEDEEEEDQEEEEE
EEEEEEEEEEEEEEEEEEEEKKVILYSPGTLSPDLMEFERYLNFYKQTMDLLTGSGIITP
QEAALPIVSAAISHLWQNLSEERKASLRQAWAQKHRGPATLAEACREPACAEGSVKDSGV
DSQGASCSLVSTPEEILFEDAFDVASFLDKSEVPSTSSSSSVLASCNPENPEEKFQLYMQ
IINFFKGLSCANTQVKQEASFPVDEEMIMLQCTETFDDEDL

>gi568815591r:135086154_135311502|GENSCAN_predicted_CDS_6|1206_bp
atggggaagattgatgtggacaagatcctctttttcaatcaagaaatcaggctgtggcag
cttataatggcaacccctgaagaaaacagcaatccccatgacagagcaacaccccagctg
ccagcacagctgcaggagcttgagcatcgggtggcccggagacggctgtcccaggcccgc
caccgagccaccctggcagcgctcttcaacaacctcaggaagacagtgtactctcagtct
gatctcatagcctcaaagtggcaggttctgaataaggcaaagagtcatattccagaactg
gagcaaaccctggataatttgctgaagctgaaagcatccttcaacctggaagatgggcat
gcaagcagcttagaggaggtcaagaaagaatatgccagcatgtattctggaaatgacagc
ctgctttcaaacagttttcctcagaatggttcctccccttggtgcccaactgaggcagtc
aggaaggatgctgaggaggaggaagatgaggaagaggaagatcaagaagaagaggaggag
gaagaagaagaggaggaggaggaagaggaggaagaggaagaggaggaggaggaagaggag
aaaaaagtgatcttatactccccaggaactttgtcgcctgacctcatggaatttgaacgg
tatctcaacttttacaaacagacgatggaccttctgactggcagcgggatcattaccccg
caggaggcggcgctgcccatcgtctccgcggccatctcccacctgtggcagaacctctcg
gaggagaggaaggccagcctccggcaggcctgggcgcagaagcaccgcggccctgcgacc
ctggcggaggcctgccgagagccggcctgtgccgagggcagcgtgaaggacagcggcgtg
gacagccagggggccagctgctcgctggtctccacgcccgaggagatcctttttgaggat
gcctttgatgtggcaagcttcctggacaaaagtgaggttccgagtacatctagctccagt
tcagtgcttgccagctgcaacccagaaaacccagaggagaagtttcagctctatatgcag
atcatcaacttttttaaaggccttagctgtgcaaacactcaagtaaagcaggaagcatcc
tttcccgttgatgaagagatgatcatgttgcagtgcacagagacctttgacgatgaagat
ttgtaa

>gi568815591r:135086154_135311502|GENSCAN_predicted_peptide_7|295_aa
HFLTALGGLMAVPFILAKDLCLQQDPLTQSYLISTIFFAPASACSCKLPIPQGGTFAFVV
ISLAMLSLPSWNCPEWTLSASQVNTNFPEFTEKWQKRIQEGAIMVTSCVRMLVGFSGLTG
FLMGFICSLAVAPTNCLVALPLLDSAGNNAGIQWGISAMYCFVLRLRKDELWPFGSPRAY
GHRSVVVKYVEMNLSRSLFAFGFSIYCGLTIPNRVSKNPEMLQTGVLQPAQVVQMLLTMG
MFISGFLGFLLDNTIPAEDDALLAFHCHCKGKRKTQPSIGSTRNIPGRTMAAKAG

>gi568815591r:135086154_135311502|GENSCAN_predicted_CDS_7|888_bp
cacttcctcacagccctggggggcctcatggcggtgccattcatcctggccaaggacctg
tgcctgcagcaggaccccctgacacagagctacctcatcagcaccattttctttgctcca
gcatctgcatgctcctgcaagctgcccattccccagggaggtacgtttgcttttgtggta
atttctctggccatgctctcccttccctcctggaattgccctgagtggacactcagtgcc
agccaggtgaacaccaactttccagaattcactgagaaatggcagaagaggatccaagag
ggtgctatcatggtcacttcctgtgtccggatgctggtgggcttctcaggcctgactggc
tttctcatgggtttcatctgctccttggccgttgctccaactaactgcctagtggccctg
cccctcttggattctgcaggcaataatgccgggatccagtgggggatttctgccatgtat
tgcttcgtgttgcgtcttcgcaaggatgagctctggccatttggttctccacgtgcgtat
ggccacaggagtgttgtggtcaagtacgtggagatgaacttgtccaggagcctcttcgcc
tttggcttctccatctactgtgggctcaccattcccaaccgggtgagcaaaaaccccgag
atgctccagacaggggttctccagccggcccaggttgttcagatgctgctgaccatgggc
atgttcatcagtggatttctgggttttcttctagacaacaccatccccgctgaggatgat
gccctcctagccttccactgtcattgcaaaggcaaaagaaaaacacagccttccattggc
tctaccagaaacatcccagggaggacaatggcagccaaagcaggatga