Result of FASTA (omim) for pF1KB6771
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6771, 118 aa
  1>>>pF1KB6771 118 - 118 aa - 118 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3793+/-0.000232; mu= 8.6516+/- 0.015
 mean_var=112.4185+/-21.862, 0's: 0 Z-trim(125.6): 16  B-trim: 0 in 0/59
 Lambda= 0.120964
 statistics sampled from 49656 (49674) to 49656 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.862), E-opt: 0.2 (0.582), width:  16
 Scan time:  4.450

The best scores are:                                      opt bits E(85289)
NP_001317054 (OMIM: 185881) vesicle-associated mem ( 118)  765 142.1   2e-34
NP_055047 (OMIM: 185881) vesicle-associated membra ( 116)  743 138.2 2.9e-33
NP_055046 (OMIM: 108600,185880) vesicle-associated ( 118)  608 114.7 3.6e-26
NP_058439 (OMIM: 108600,185880) vesicle-associated ( 116)  586 110.8 5.1e-25
NP_001284367 (OMIM: 108600,185880) vesicle-associa ( 116)  586 110.8 5.1e-25
NP_954740 (OMIM: 108600,185880) vesicle-associated ( 117)  586 110.8 5.1e-25
NP_004772 (OMIM: 603657) vesicle-associated membra ( 100)  461 89.0 1.7e-18
XP_016858330 (OMIM: 603657) PREDICTED: vesicle-ass ( 122)  461 89.0   2e-18
NP_001172056 (OMIM: 606909) vesicle-associated mem ( 140)  269 55.6 2.7e-08
NP_003753 (OMIM: 606909) vesicle-associated membra ( 141)  269 55.6 2.7e-08
NP_003752 (OMIM: 603177) vesicle-associated membra ( 100)  235 49.5 1.3e-06
NP_006625 (OMIM: 607029) vesicle-associated membra ( 116)  201 43.6 8.6e-05
XP_016885552 (OMIM: 300053) PREDICTED: vesicle-ass ( 173)  179 39.9  0.0017
XP_016885249 (OMIM: 300053) PREDICTED: vesicle-ass ( 173)  179 39.9  0.0017
NP_001138621 (OMIM: 300053) vesicle-associated mem ( 179)  179 39.9  0.0017
NP_005629 (OMIM: 300053) vesicle-associated membra ( 220)  179 40.0   0.002


>>NP_001317054 (OMIM: 185881) vesicle-associated membran  (118 aa)
 initn: 765 init1: 765 opt: 765  Z-score: 738.9  bits: 142.1 E(85289): 2e-34
Smith-Waterman score: 765; 100.0% identity (100.0% similar) in 118 aa overlap (1-118:1-118)

               10        20        30        40        50        60
pF1KB6 MDRSATAATAPPAAPAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDRSATAATAPPAAPAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQ
               10        20        30        40        50        60

               70        80        90       100       110        
pF1KB6 KLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILIIIIVYFST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILIIIIVYFST
               70        80        90       100       110        

>>NP_055047 (OMIM: 185881) vesicle-associated membrane p  (116 aa)
 initn: 743 init1: 743 opt: 743  Z-score: 718.2  bits: 138.2 E(85289): 2.9e-33
Smith-Waterman score: 743; 100.0% identity (100.0% similar) in 115 aa overlap (4-118:2-116)

               10        20        30        40        50        60
pF1KB6 MDRSATAATAPPAAPAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQ
          :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055   MSATAATAPPAAPAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQ
                 10        20        30        40        50        

               70        80        90       100       110        
pF1KB6 KLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILIIIIVYFST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 KLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILIIIIVYFST
       60        70        80        90       100       110      

>>NP_055046 (OMIM: 108600,185880) vesicle-associated mem  (118 aa)
 initn: 628 init1: 597 opt: 608  Z-score: 590.8  bits: 114.7 E(85289): 3.6e-26
Smith-Waterman score: 608; 77.8% identity (90.6% similar) in 117 aa overlap (6-118:2-118)

               10            20        30        40        50      
pF1KB6 MDRSATAATAPPA----APAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVL
            .: . :::    . :  ::::.::::.:::::::::::::.:::::.::::::::
NP_055     MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVL
                   10        20        30        40        50      

         60        70        80        90       100       110      
pF1KB6 ERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILIIIIVYF
       ::::::::::::::::::::::::.::::::::::::: ::::.::.:::::...:..::
NP_055 ERDQKLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVIYF
         60        70        80        90       100       110      

         
pF1KB6 ST
        :
NP_055 FT
         

>>NP_058439 (OMIM: 108600,185880) vesicle-associated mem  (116 aa)
 initn: 606 init1: 575 opt: 586  Z-score: 570.1  bits: 110.8 E(85289): 5.1e-25
Smith-Waterman score: 586; 78.6% identity (91.1% similar) in 112 aa overlap (6-113:2-113)

               10            20        30        40        50      
pF1KB6 MDRSATAATAPPA----APAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVL
            .: . :::    . :  ::::.::::.:::::::::::::.:::::.::::::::
NP_058     MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVL
                   10        20        30        40        50      

         60        70        80        90       100       110      
pF1KB6 ERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILIIIIVYF
       ::::::::::::::::::::::::.::::::::::::: ::::.::.:::::...:.   
NP_058 ERDQKLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVRRD
         60        70        80        90       100       110      

         
pF1KB6 ST

>>NP_001284367 (OMIM: 108600,185880) vesicle-associated   (116 aa)
 initn: 606 init1: 575 opt: 586  Z-score: 570.1  bits: 110.8 E(85289): 5.1e-25
Smith-Waterman score: 586; 78.6% identity (91.1% similar) in 112 aa overlap (6-113:2-113)

               10            20        30        40        50      
pF1KB6 MDRSATAATAPPA----APAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVL
            .: . :::    . :  ::::.::::.:::::::::::::.:::::.::::::::
NP_001     MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVL
                   10        20        30        40        50      

         60        70        80        90       100       110      
pF1KB6 ERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILIIIIVYF
       ::::::::::::::::::::::::.::::::::::::: ::::.::.:::::...:.   
NP_001 ERDQKLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVRRG
         60        70        80        90       100       110      

         
pF1KB6 ST

>>NP_954740 (OMIM: 108600,185880) vesicle-associated mem  (117 aa)
 initn: 606 init1: 575 opt: 586  Z-score: 570.1  bits: 110.8 E(85289): 5.1e-25
Smith-Waterman score: 586; 78.6% identity (91.1% similar) in 112 aa overlap (6-113:2-113)

               10            20        30        40        50      
pF1KB6 MDRSATAATAPPA----APAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVL
            .: . :::    . :  ::::.::::.:::::::::::::.:::::.::::::::
NP_954     MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVL
                   10        20        30        40        50      

         60        70        80        90       100       110      
pF1KB6 ERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILIIIIVYF
       ::::::::::::::::::::::::.::::::::::::: ::::.::.:::::...:.   
NP_954 ERDQKLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVSKY
         60        70        80        90       100       110      

         
pF1KB6 ST
         
NP_954 R 
         

>>NP_004772 (OMIM: 603657) vesicle-associated membrane p  (100 aa)
 initn: 491 init1: 455 opt: 461  Z-score: 453.1  bits: 89.0 E(85289): 1.7e-18
Smith-Waterman score: 461; 81.3% identity (85.7% similar) in 91 aa overlap (24-114:5-94)

               10        20        30        40        50        60
pF1KB6 MDRSATAATAPPAAPAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQ
                              :     ::::::::: :::::::::::::::::::::
NP_004                    MSTGPTAATGSNRRLQQTQNQVDEVVDIMRVNVDKVLERDQ
                                  10        20        30        40 

               70        80        90       100       110          
pF1KB6 KLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILIIIIVYFST  
       :::::::::::::::::::::::::::::::::: ::  : :.   .:.::::.      
NP_004 KLSELDDRADALQAGASQFETSAAKLKRKYWWKNCKMWAI-GITVLVIFIIIIIVWVVSS
              50        60        70        80         90       100

>>XP_016858330 (OMIM: 603657) PREDICTED: vesicle-associa  (122 aa)
 initn: 459 init1: 448 opt: 461  Z-score: 451.9  bits: 89.0 E(85289): 2e-18
Smith-Waterman score: 461; 81.3% identity (85.7% similar) in 91 aa overlap (24-114:5-94)

               10        20        30        40        50        60
pF1KB6 MDRSATAATAPPAAPAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQ
                              :     ::::::::: :::::::::::::::::::::
XP_016                    MSTGPTAATGSNRRLQQTQNQVDEVVDIMRVNVDKVLERDQ
                                  10        20        30        40 

               70        80        90       100       110          
pF1KB6 KLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILIIIIVYFST  
       :::::::::::::::::::::::::::::::::: ::  : :.   .:.::::.      
XP_016 KLSELDDRADALQAGASQFETSAAKLKRKYWWKNCKMWAI-GITVLVIFIIIIIGELPFS
              50        60        70        80         90       100

XP_016 KLIGKVFSMCSQTIDFVYKNSD
              110       120  

>>NP_001172056 (OMIM: 606909) vesicle-associated membran  (140 aa)
 initn: 255 init1: 242 opt: 269  Z-score: 270.0  bits: 55.6 E(85289): 2.7e-08
Smith-Waterman score: 269; 36.7% identity (76.5% similar) in 98 aa overlap (17-114:39-132)

                             10        20        30        40      
pF1KB6               MDRSATAATAPPAAPAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVD
                                     : .::   :     : .....: :::::.:
NP_001 LNDDDVTGSVKSERRNLLEDDSDEEEDFFLGPSGPRFGP----RNDKIKHVQNQVDEVID
       10        20        30        40            50        60    

         50        60        70        80        90       100      
pF1KB6 IMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICA
       .:. :. ::.:: ..:.::.:....:. .:. : . . .:.:..::.. :.  :.... :
NP_001 VMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQMWWRGCKIKAIMALVAA
           70        80        90       100       110       120    

        110            
pF1KB6 IILIIIIVYFST    
       :.:..::.        
NP_001 ILLLVIIILIVMKYRT
          130       140

>>NP_003753 (OMIM: 606909) vesicle-associated membrane p  (141 aa)
 initn: 255 init1: 242 opt: 269  Z-score: 270.0  bits: 55.6 E(85289): 2.7e-08
Smith-Waterman score: 269; 36.7% identity (76.5% similar) in 98 aa overlap (17-114:40-133)

                             10        20        30        40      
pF1KB6               MDRSATAATAPPAAPAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVD
                                     : .::   :     : .....: :::::.:
NP_003 NDDDVTGSVKSERRNLLEDDSDEEEDFFLRGPSGPRFGP----RNDKIKHVQNQVDEVID
      10        20        30        40            50        60     

         50        60        70        80        90       100      
pF1KB6 IMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICA
       .:. :. ::.:: ..:.::.:....:. .:. : . . .:.:..::.. :.  :.... :
NP_003 VMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQMWWRGCKIKAIMALVAA
          70        80        90       100       110       120     

        110            
pF1KB6 IILIIIIVYFST    
       :.:..::.        
NP_003 ILLLVIIILIVMKYRT
         130       140 




118 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 23:56:33 2016 done: Fri Nov  4 23:56:34 2016
 Total Scan time:  4.450 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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