Result of FASTA (ccds) for pF1KB6773
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6773, 118 aa
  1>>>pF1KB6773 118 - 118 aa - 118 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5049+/-0.000533; mu= 8.4693+/- 0.033
 mean_var=120.1038+/-23.696, 0's: 0 Z-trim(118.3): 16  B-trim: 0 in 0/55
 Lambda= 0.117030
 statistics sampled from 19241 (19257) to 19241 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.864), E-opt: 0.2 (0.592), width:  16
 Scan time:  1.830

The best scores are:                                      opt bits E(32554)
CCDS41740.1 VAMP1 gene_id:6843|Hs108|chr12         ( 118)  788 141.7 9.8e-35
CCDS73422.1 VAMP1 gene_id:6843|Hs108|chr12         ( 116)  754 136.0 5.2e-33
CCDS44809.1 VAMP1 gene_id:6843|Hs108|chr12         ( 116)  754 136.0 5.2e-33
CCDS31731.1 VAMP1 gene_id:6843|Hs108|chr12         ( 117)  754 136.0 5.2e-33
CCDS32561.1 VAMP2 gene_id:6844|Hs108|chr17         ( 116)  609 111.5 1.2e-25
CCDS82064.1 VAMP2 gene_id:6844|Hs108|chr17         ( 118)  608 111.3 1.4e-25
CCDS88.1 VAMP3 gene_id:9341|Hs108|chr1             ( 100)  463 86.8 2.8e-18


>>CCDS41740.1 VAMP1 gene_id:6843|Hs108|chr12              (118 aa)
 initn: 788 init1: 788 opt: 788  Z-score: 737.1  bits: 141.7 E(32554): 9.8e-35
Smith-Waterman score: 788; 100.0% identity (100.0% similar) in 118 aa overlap (1-118:1-118)

               10        20        30        40        50        60
pF1KB6 MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQ
               10        20        30        40        50        60

               70        80        90       100       110        
pF1KB6 KLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVIYFFT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 KLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVIYFFT
               70        80        90       100       110        

>>CCDS73422.1 VAMP1 gene_id:6843|Hs108|chr12              (116 aa)
 initn: 754 init1: 754 opt: 754  Z-score: 706.2  bits: 136.0 E(32554): 5.2e-33
Smith-Waterman score: 754; 100.0% identity (100.0% similar) in 113 aa overlap (1-113:1-113)

               10        20        30        40        50        60
pF1KB6 MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQ
               10        20        30        40        50        60

               70        80        90       100       110        
pF1KB6 KLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVIYFFT
       :::::::::::::::::::::::::::::::::::::::::::::::::::::     
CCDS73 KLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVRRG  
               70        80        90       100       110        

>>CCDS44809.1 VAMP1 gene_id:6843|Hs108|chr12              (116 aa)
 initn: 754 init1: 754 opt: 754  Z-score: 706.2  bits: 136.0 E(32554): 5.2e-33
Smith-Waterman score: 754; 100.0% identity (100.0% similar) in 113 aa overlap (1-113:1-113)

               10        20        30        40        50        60
pF1KB6 MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQ
               10        20        30        40        50        60

               70        80        90       100       110        
pF1KB6 KLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVIYFFT
       :::::::::::::::::::::::::::::::::::::::::::::::::::::     
CCDS44 KLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVRRD  
               70        80        90       100       110        

>>CCDS31731.1 VAMP1 gene_id:6843|Hs108|chr12              (117 aa)
 initn: 754 init1: 754 opt: 754  Z-score: 706.1  bits: 136.0 E(32554): 5.2e-33
Smith-Waterman score: 754; 100.0% identity (100.0% similar) in 113 aa overlap (1-113:1-113)

               10        20        30        40        50        60
pF1KB6 MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQ
               10        20        30        40        50        60

               70        80        90       100       110        
pF1KB6 KLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVIYFFT
       :::::::::::::::::::::::::::::::::::::::::::::::::::::     
CCDS31 KLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVSKYR 
               70        80        90       100       110        

>>CCDS32561.1 VAMP2 gene_id:6844|Hs108|chr17              (116 aa)
 initn: 628 init1: 597 opt: 609  Z-score: 573.8  bits: 111.5 E(32554): 1.2e-25
Smith-Waterman score: 609; 78.3% identity (89.2% similar) in 120 aa overlap (1-118:1-116)

                 10        20        30        40        50        
pF1KB6 MSAPAQ--PPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLER
       ::: :   :::    . :  ::::.::::.:::::::::::::.:::::.::::::::::
CCDS32 MSATAATAPPA----APAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLER
               10            20        30        40        50      

       60        70        80        90       100       110        
pF1KB6 DQKLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVIYFFT
       ::::::::::::::::::::::.::::::::::::: ::::.::.:::::...:..:: :
CCDS32 DQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILIIIIVYFST
         60        70        80        90       100       110      

>>CCDS82064.1 VAMP2 gene_id:6844|Hs108|chr17              (118 aa)
 initn: 628 init1: 597 opt: 608  Z-score: 572.8  bits: 111.3 E(32554): 1.4e-25
Smith-Waterman score: 608; 77.8% identity (90.6% similar) in 117 aa overlap (2-118:6-118)

                   10        20        30        40        50      
pF1KB6     MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVL
            .: . :::    . :  ::::.::::.:::::::::::::.:::::.::::::::
CCDS82 MDRSATAATAPPA----APAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVL
               10            20        30        40        50      

         60        70        80        90       100       110      
pF1KB6 ERDQKLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVIYF
       ::::::::::::::::::::::::.::::::::::::: ::::.::.:::::...:..::
CCDS82 ERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILIIIIVYF
         60        70        80        90       100       110      

         
pF1KB6 FT
        :
CCDS82 ST
         

>>CCDS88.1 VAMP3 gene_id:9341|Hs108|chr1                  (100 aa)
 initn: 454 init1: 437 opt: 463  Z-score: 441.5  bits: 86.8 E(32554): 2.8e-18
Smith-Waterman score: 463; 73.1% identity (88.2% similar) in 93 aa overlap (23-115:4-96)

               10        20        30        40        50        60
pF1KB6 MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQ
                             ::     ::::::::: ::.:::::.::::::::::::
CCDS88                    MSTGPTAATGSNRRLQQTQNQVDEVVDIMRVNVDKVLERDQ
                                  10        20        30        40 

               70        80        90       100       110         
pF1KB6 KLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVIYFFT 
       ::::::::::::::::::::.::::::::::::::::  .  .. .:....:...    
CCDS88 KLSELDDRADALQAGASQFETSAAKLKRKYWWKNCKMWAIGITVLVIFIIIIIVWVVSS
              50        60        70        80        90       100




118 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 20:08:53 2016 done: Sat Nov  5 20:08:53 2016
 Total Scan time:  1.830 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]
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