GENSCAN 1.0	Date run:  5-Nov-116	Time: 21:44:56

Sequence gi568815576r:43726004_43962382 : 236379 bp : 48.78% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.07 PlyA -   1741   1736    6                               1.05
 1.06 Term -   2355   2121  235  2  1   47   54   145 0.167   2.79
 1.05 Intr -   9990   9854  137  0  2   74   80   121 0.968   9.27
 1.04 Intr -  15028  14855  174  1  0   53   84    62 0.600   2.44
 1.03 Intr -  19014  18870  145  2  1  129   45    71 0.165   7.18
 1.02 Intr -  47100  46884  217  1  1   65   34   197 0.008   9.56
 1.01 Init -  47675  47627   49  2  1   86   58    63 0.981   2.21
 1.00 Prom -  52035  51996   40                              -5.76

 2.00 Prom +  55241  55280   40                              -4.26
 2.01 Init +  76553  76770  218  1  2   89   11   220 0.030  12.56
 2.02 Intr +  84191  84248   58  2  1   70   98     1 0.061  -1.81
 2.03 Intr +  84590  84707  118  1  1   99  115   -15 0.027   2.34
 2.04 Intr +  97693  97753   61  2  1   96  105    65 0.095   6.79
 2.05 Intr +  98821  98903   83  1  2   91   72     0 0.847  -2.02
 2.06 Term +  98955  99118  164  1  2   68   47   159 0.811   7.90
 2.07 PlyA +  99440  99445    6                               1.05

 3.12 PlyA -  99632  99627    6                               1.05
 3.11 Term - 100110  99998  113  1  2   89   38   130 0.921   6.82
 3.10 Intr - 103195 103057  139  1  1  116   71   223 0.998  23.44
 3.09 Intr - 107731 107637   95  2  2  112  100   146 0.798  17.88
 3.08 Intr - 112834 112673  162  2  0   -3   70   131 0.598   2.15
 3.07 Intr - 112990 112864  127  1  1  115   75   147 0.998  16.35
 3.06 Intr - 114022 113942   81  1  0  124  121    71 0.999  13.83
 3.05 Intr - 115929 115799  131  1  2   81   75   261 0.836  24.51
 3.04 Intr - 118864 118778   87  2  0   85   58    38 0.037   0.44
 3.03 Intr - 119204 119115   90  0  0   55   55    69 0.012   0.27
 3.02 Intr - 123966 123952   15  1  0  114   99    24 0.008   1.62
 3.01 Init - 136379 136211  169  2  1  107  105   313 0.778  34.60
 3.00 Prom - 147559 147520   40                              -4.26

 4.10 PlyA - 149616 149611    6                               1.05
 4.09 Term - 154882 154792   91  0  1  112   55    42 0.701   0.49
 4.08 Intr - 155671 155555  117  0  0   89   94   113 0.879  11.58
 4.07 Intr - 158342 158210  133  0  1   35  116   189 0.302  16.10
 4.06 Intr - 160485 160300  186  1  0  104   58   185 0.999  16.76
 4.05 Intr - 161648 161588   61  2  1  117   66   120 0.996  11.01
 4.04 Intr - 163535 163326  210  2  0   54   92   240 0.999  20.11
 4.03 Intr - 163861 163796   66  1  0  112  105    27 0.982   5.90
 4.02 Intr - 165291 165059  233  1  2   88   64   394 0.997  34.49
 4.01 Init - 165877 165685  193  1  1  104  109   363 0.993  39.13
 4.00 Prom - 177497 177458   40                              -5.46

 5.03 PlyA - 178097 178092    6                               1.05
 5.02 Term - 187349 187068  282  2  0   17   40   706 0.698  54.13
 5.01 Init - 188848 188774   75  1  0   60   76   -16 0.271  -4.51
 5.00 Prom - 189403 189364   40                             -12.21

 6.00 Prom + 189444 189483   40                              -5.76
 6.01 Init + 189777 189814   38  2  2   24   59    18 0.598  -8.02
 6.02 Intr + 189979 190284  306  1  0  121   37   353 0.049  29.06
 6.03 Intr + 192544 192565   22  1  1   91   93     6 0.013  -1.05
 6.04 Intr + 196078 196147   70  0  1   71   49    40 0.034  -2.85
 6.05 Intr + 196290 196448  159  1  0  103   48    35 0.044   0.96
 6.06 Intr + 197874 198095  222  1  0   42   65   251 0.107  16.30
 6.07 Intr + 200932 201164  233  2  2   97   69   202 0.963  16.69
 6.08 Intr + 202821 202886   66  2  0  121  103    -2 0.876   3.70
 6.09 Intr + 206875 207084  210  0  0   65  113   271 0.965  26.41
 6.10 Intr + 208603 208663   61  0  1  110   75    25 0.598   1.71
 6.11 Intr + 211048 211269  222  2  0   97   80   121 0.598  10.30
 6.12 Intr + 217609 217622   14  2  2  125   71     2 0.122  -3.30
 6.13 Intr + 218688 218792  105  2  0   85   99    67 0.377   7.91
 6.14 Intr + 222130 222315  186  0  0   60   42    78 0.326   0.29
 6.15 Term + 225653 225724   72  1  0   69   48   122 0.607   4.21
 6.16 PlyA + 226779 226784    6                               1.05

 7.02 PlyA - 226949 226944    6                               1.05
 7.01 Sngl - 229576 229298  279  1  0   70   44   241 0.446  11.39

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Intr +  54712  54821  110  1  2  114   82    32 0.839   5.13
S.002 Sngl +  76553  76774  222  1  0   89   45   237 0.963  14.65
S.003 Init -  95937  95880   58  0  1   92  119    35 0.892   8.48
S.004 Init +  97713  97753   41  2  2   75  105    56 0.806   5.66
S.005 Init + 119446 119522   77  0  2   59   65   148 0.892   8.16
S.006 Intr + 125406 125559  154  0  1  100   77   108 0.908  10.97
S.007 Term + 129071 129234  164  0  2   81   47   140 0.950   7.30
S.008 Term + 189979 190288  310  1  1  121   54   349 0.944  29.33
S.009 Init + 197909 198095  187  1  1   93   65   241 0.805  21.52


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815576r:43726004_43962382|GENSCAN_predicted_peptide_1|318_aa
MGFRHVGQAGLELLTSATAVANPTLSSLDVKRILFQKITDRGDELQKAFQLLDTGQNLTV
SKSELRRIITDFLMPLTREQFQDVLAQVLNIFSRSGGSLVTFRSKQVQCRRVQFKPQVWG
WFSTPFSAPPSPRALEWPLPNFSLTNDKSLGDVALVGVSSLPGCCFPVLTLEIHMGCSGV
LKKRIVLMSSILPKEVFKNIKTVMKAFELIDVNKTGLVRPQELRRVLETFCMKLRDEEYE
NTICKSKDLELTQMPINDRLDKENVADIHQEYYAAIKKNEFMSFAGTWMKLETVILSKLT
QEQKTKHRMFSLIVRVEQ

>gi568815576r:43726004_43962382|GENSCAN_predicted_CDS_1|957_bp
atggggtttcgccatgttggccaggctggtctcgaactcctgacctcagccacagctgtt
gcaaatccaacactgtcctccttagatgttaaacggattttatttcaaaaaattaccgac
agaggggatgagttgcaaaaagcctttcagctgctggatactggtcagaacttgactgtg
tcaaaaagtgaactgagaagaatcatcacagacttcctgatgccgctcacacgagaacag
tttcaggacgtgttggctcaggtgctgaatatcttcagcagatctggtggctctctggtc
acatttaggtctaaacaggtccagtgcaggcgagttcagtttaaacctcaagtgtggggc
tggttcagcacgcccttctcagctcctccaagcccgagggccctggagtggcccttgcca
aacttcagtctgacaaatgataagagccttggagacgtcgctctggtgggtgtgagctcg
ctgccaggttgctgcttcccggtgctcacgctagagatccatatgggttgctctggggtt
ttaaaaaagcgcatcgtgctcatgtcctccattttaccaaaggaggttttcaaaaacatt
aagactgttatgaaagcctttgagctcattgatgttaacaagactggactggttcgaccg
caggagctaagaagggttctggagaccttctgtatgaagttaagagacgaggaatacgaa
aacactatttgtaagagcaaagacttggaactaacccaaatgcccataaatgatagactg
gataaagaaaatgtggcagatatacaccaggagtactatgcagccataaaaaagaatgaa
ttcatgtcatttgctggtacatggatgaagttggaaaccgttattctcagcaaactaaca
caggaacagaaaaccaaacaccgcatgttctcactcattgtgagagttgaacaatga

>gi568815576r:43726004_43962382|GENSCAN_predicted_peptide_2|233_aa
MKDKSQRSASLSAKPAPPKPEPKPKRAPTKKREKVHKGKKGKADIGKEENNPAQHGDAKT
DRAQKAECVGDANQLVRTKFKKYEGPNCAWHTVPVSCRDQSMGAIEISVQGEEVDSWNRA
VFPWRAKFTVSVPGTVPGMEQVQSNDRLHEVSHINDRQPRSPRGWLATGPRLSIASANVD
TRRDEVDRHAGGRANLIRVKQGYTRKMVLPRLSASGAQNKLNDKDPGILEIYY

>gi568815576r:43726004_43962382|GENSCAN_predicted_CDS_2|702_bp
atgaaggacaaatcacagagatctgcaagcttgtctgctaaacctgctcctccaaagcca
gagcccaagcctaaaagggcccctacaaagaagagagagaaggtacacaaagggaaaaag
ggaaaagctgatattggcaaggaggagaataaccctgcacaacatggagatgccaaaaca
gaccgggcacagaaagctgaatgtgttggagatgccaaccaacttgtgaggactaaattt
aaaaagtatgagggaccaaactgtgcttggcacacagtgccagtcagctgcagagatcag
agcatgggtgctatagagatctctgtacaaggggaagaggtagatagctggaacagggca
gtttttccctggagagcgaaatttacagtctcagtgccgggaacagtgcctggcatggag
caggtgcagtcgaatgaccgactccatgaagtgagccacataaatgacagacaaccccgg
tccccacggggttggctggctactggcccccgactctccatcgcttcagcgaatgtggat
acacggagggatgaggtggacagacacgcaggcggccgtgccaacctgatccgagtgaaa
cagggctacactcgcaaaatggtcctcccacggctgagcgcctcaggtgcacagaacaaa
ctgaatgataaagacccggggattttagaaatttactattaa

>gi568815576r:43726004_43962382|GENSCAN_predicted_peptide_3|402_aa
MAESEAETPSTPGEFESKYFEFHGVRLPPFCRGKMEEIANFPVRPSDVWIVTYPKSGREH
AGRGDEEPVAETGAADMKGPQWVKLCPFLLGGVEPVTVPAPLGRSREERACPVHPRVCTA
GTSLLQEVVYLVSQGADPDEIGLMNIDEQLPVLEYPQPGLDIIKELTSPRLIKSHLPYRF
LPSDLHNGDSKVIYMARNPKDLVVSYYQFHRSLRTMSYRGTFQEFCRRFMNDKQPEPSVV
VDGLAGAGCFPDTVSSSDSDHVGQARGHFTDEDTEAEGRERGRDPRAVGYGSWFEHVQEF
WEHRMDSNVLFLKYEDMHRDLVTMVEQLARFLGVSCDKAQLEALTEHCHQLVDQCCNAEA
LPVGRGRVGLWKDIFTVSMNEKFDLVYKQKMGKCDLTFDFYL

>gi568815576r:43726004_43962382|GENSCAN_predicted_CDS_3|1209_bp
atggcggagagcgaggccgagacccccagcaccccgggggagttcgagagcaagtacttc
gagttccatggcgtgcggctgccgcccttctgccgcgggaagatggaggagatcgccaac
ttcccggtgcggcccagcgacgtgtggatcgtcacctaccccaagtccgggagggagcac
gcagggcggggagatgaggagccagtggcagaaactggagccgccgatatgaagggacca
cagtgggttaagctgtgcccgtttcttctgggaggtgtggagccggtcacagtgcctgct
cccctgggccgtagcagggaggagagggcctgtcccgtgcatcccagggtgtgcactgca
ggcaccagcttgctgcaggaggtggtctacttggtgagccagggcgctgaccccgatgag
atcggcttgatgaacatcgacgagcagctcccggtcctggagtacccacagccgggcctg
gacatcatcaaggaactgacctctccccgcctcatcaagagccacctgccctaccgcttt
ctgccctctgacctccacaatggagactccaaggtcatctatatggctcgcaaccccaag
gatctggtggtgtcttattatcagttccaccgctctctgcggaccatgagctaccgaggc
acctttcaagaattctgccggaggtttatgaatgataagcaaccggagccgtctgttgtc
gtggacggcctggcaggtgctgggtgcttccccgacacggtctccagttctgacagtgac
catgtaggtcaggcccgcggtcactttacagatgaagacactgaggccgagggtcgtgaa
cgtggccgagatcctagagctgtgggctacggctcctggtttgagcacgtgcaggagttc
tgggagcaccgcatggactcgaacgtgctttttctcaagtatgaagacatgcatcgggac
ctggtgacgatggtggagcagctggccagattcctgggggtgtcctgtgacaaggcccag
ctggaagccctgacggagcactgccaccagctggtggaccagtgctgcaacgctgaggcc
ctgcccgtgggccggggaagagttgggctgtggaaggacatcttcaccgtctccatgaat
gagaagtttgacttggtgtataaacagaagatgggaaagtgtgacctcacgtttgacttt
tatttataa

>gi568815576r:43726004_43962382|GENSCAN_predicted_peptide_4|429_aa
MGFLEEEGRWNLSFSGAGYLGAHHVGATECLRQRAPRLLQGARRIYGSSSGALNAVSIVC
GKSVDFCCSHLLGMVGQLERLSLSILHPAYAPIEHVKQQLQDALPPDAHVLASQRLGISL
TRWPDGRNFLVTDFATCDELIQALVCTLYFPFYCGLIPPEFRGERYIDGALSNNLPFADC
PSTITVSPFHGTVDICPQSTSPNLHELNVFNFSFQISTENFFLGLICLIPPSLEVVADNC
RQGYLDALRFLERRGLTKEPVLWTLVSKEPPAPADGNWDAGCDQRWKGGLSLNWKVPHVQ
VKDVPNFEQLSPELEAALKKACTRDPSRWARFWHSGPGQVLTYLLLPCTLPFEYIYFRSR
RLVVWLPDVPADLWWMQGLLRNMALEVFSRTKAQLLGPISPPATRVLETSPLQPQIAPHR
EELGPTHQA

>gi568815576r:43726004_43962382|GENSCAN_predicted_CDS_4|1290_bp
atgggcttcttagaggaggagggcagatggaacctgtccttctccggcgccggctacctg
ggcgcccaccacgtgggcgccaccgaatgcctgcgccagcgagccccgcgcctcctccag
ggcgcccgccgcatctacggttcctcgtctggggcgctcaacgcagtcagcatcgtctgc
ggcaagtcggtcgacttctgctgctcccacctcctgggcatggttgggcagttggagcgg
ctgagcctaagcatcctgcacccggcctacgcgcccatcgagcacgtcaagcagcagctg
caggatgctctgccccccgacgcccacgtcctggcctcccagcggctgggcatttcgctg
acccgctggcctgacggacgcaacttcttggtcactgacttcgccacctgcgatgagctc
atccaggccttggtctgcaccttatactttcctttctactgcgggctgatcccccccgag
ttcagaggggagcgctacatcgatggggctctgagcaacaacttgccctttgcagactgc
ccctccaccatcacggtgtcgcccttccatgggacagtggacatctgcccccagagcacc
tcccccaacctgcatgagctgaacgtcttcaacttcagcttccaaatctccactgagaac
ttcttcctggggctcatatgtctcataccccccagcctcgaggtagtggccgacaactgc
agacaaggctacctggatgccctgaggttcctggagagacgtggactcaccaaggaacca
gtgctatggacgctggtgtctaaggaacccccagccccggctgacggaaactgggatgct
ggctgtgaccaacgctggaaggggggcctgtctctcaactggaaagtgccccatgtgcaa
gtcaaggatgtacccaactttgagcagctctcaccagagctggaggctgcactgaagaaa
gcatgtacgagggatcccagccggtgggcccgcttctggcactcggggcctggacaggtg
ctgacgtacctgctgctaccctgcacactgcccttcgagtacatctacttccgcagcaga
aggttggtggtgtggctgcccgatgtgccggcggacttgtggtggatgcagggcctgctg
aggaacatggccctcgaggttttctccaggaccaaggcccagctccttgggcccatcagc
cctccggccactcgcgtcctggaaacaagccccctccaaccccagatagctcctcataga
gaggagctcgggcccacccaccaggcctga

>gi568815576r:43726004_43962382|GENSCAN_predicted_peptide_5|118_aa
MVLGKNSGNDSLNISCACAPLGKSYPGQQSKTPSEEEERRKKEKEEERRRRKKKKEEEEG
RRRKKKEEEEEEEEEEEEEEEEEEEEEGRRRKKKKRKRKKKKKKKKKKKKKKKKKKKK

>gi568815576r:43726004_43962382|GENSCAN_predicted_CDS_5|357_bp
atggttttaggaaagaactcaggaaacgactcccttaacattagctgtgcctgtgcaccc
cttggaaaatcctaccctgggcaacagagcaagactccatcagaagaagaagaaagaaga
aagaaggagaaagaagaagaaagaagaagaagaaagaagaagaaagaagaagaagaagga
agaagaaggaagaagaaggaagaagaagaagaagaagaagaagaagaagaagaagaagaa
gaagaagaagaagaagaagaaggaagaagaaggaagaagaagaagaggaagaggaagaag
aagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagtag

>gi568815576r:43726004_43962382|GENSCAN_predicted_peptide_6|661_aa
MWKLNPQCNGIGSVRTQQVGPHQTPDAGALIRVRTQQEGPHQTPDAGALIRVRAQQEGPH
QTPDSGALIHVRAQQEGPHQTPDAGALIRVRAQQEGPHQTPDASALILDFPASRLTRTVG
GKARQKQGLQQNGEAQLNMNHPTNPGLTEKGEGFLVHSSWGRYGPADQGPPVRSSGPRSN
LAPCTAVGLLHPVPGVGQDPNPRPRPAAAAMYDAERGWSLSFAGCGFLGFYHVGATRCLS
EHAPHLLRDARMLFGASAGALHCVGVLSGIPLEQTLQVLSDLVRKARSRNIGIFHPSFNL
SKFLRQGLCKCLPANVHQLISGKIGISLTRVSDGENVLVSDFRSKDEVVDALVCSCFIPF
YSGLIPPSFRGVRYVDGGVSDNVPFIDAKTTITVSPFYGEYDICPKVKSTNFLHVDITKL
SLRLCTGNLYLLSRAFVPPDLKVLGEICLRGYLDAFRFLEEKGICNRPQPGLKSSSEGMD
PEVAMPSWANMSLDSSPESAALAVRLEGDELLDHLRLSILPWDESILDTLSPRLATDLSL
LTGDMASRYARRCPVVAVGDLTGVHSSADVSAPRLQTTVRLAMGVFPDVGVTARPRSPLM
ALSRHNRRLALLSSGHFSLRPLSSYLCMAWFFLGYDCRTLRHPISILDTELVTKAQLQLL
C

>gi568815576r:43726004_43962382|GENSCAN_predicted_CDS_6|1986_bp
atgtggaaactcaatccccaatgcaatggtattgggagtgtgaggacacagcaagtgggc
cctcaccagacaccagatgctggtgccttgatccgtgtgaggacacagcaagagggccct
caccagacaccagatgctggcgccttgatccgtgtgagggcacagcaagagggccctcac
cagacaccagattctggtgccttgatccatgtgagggcgcagcaagagggccctcaccag
acaccagatgctggcgccttgatccgtgtgagggcgcagcaagaaggccctcaccagaca
ccagatgctagtgccttgatcctggactttccagcatccagactaaccaggacagttgga
gggaaggcaaggcaaaagcaaggactgcagcagaatggggaagctcagttgaacatgaac
cacccaaccaatccaggtctcacggagaagggggagggcttcctggtccactccagctgg
gggcgctatggcccggcagaccagggtcctccagtgaggagctctggaccaaggtctaac
ttggctccatgtactgctgtgggcttgctccacccagtgccaggggtaggtcaagatcct
aacccgcgcccccgccccgccgccgccgccatgtacgacgcagagcgcggctggagcttg
tccttcgcgggctgcggcttcctgggcttctaccacgtcggggcgacccgctgcctgagc
gagcacgccccgcacctcctccgcgacgcgcgcatgttgttcggcgcttcggccggggcg
ttgcactgcgtcggcgtcctctccggtatcccgctggagcagactctgcaggtcctctca
gatcttgtgcggaaggccaggagtcggaacattggcatcttccatccatccttcaactta
agcaagttcctccgacagggtctctgcaaatgcctcccggccaatgtccaccagctcatc
tccggcaaaataggcatctctcttaccagagtgtctgatggggaaaacgttctggtgtct
gactttcggtccaaagacgaagtcgtggatgccttggtatgttcctgcttcatccccttc
tacagtggccttatccctccttccttcagaggcgtgcgatatgtggatggaggagtgagt
gacaacgtacccttcattgatgccaaaacaaccatcaccgtgtcccccttctatggggag
tacgacatctgccctaaagtcaagtccacgaactttcttcatgtggacatcaccaagctc
agtctacgcctctgcacagggaacctctaccttctctcgagagcttttgtccccccggat
ctcaaggtgctgggagagatatgccttcgaggatatttggatgcattcaggttcttggaa
gagaagggcatctgcaacaggccccagccaggcctgaagtcatcctcagaagggatggat
cctgaggtcgccatgcccagctgggcaaacatgagtctggattcttccccggagtcggct
gccttggctgtgaggctggagggagatgagctgctagaccacctgcgtctcagcatcctg
ccctgggatgagagcatcctggacaccctctcgcccaggctcgctacagatttatcactt
ctcactggtgacatggcttccagatatgcccgacgatgtcctgtggttgcagtgggtgac
ctcacaggtgttcactcgagtgctgatgtgtctgctccccgcctccagaccacggtccgc
ctggcaatgggcgtcttcccagatgttggtgtcaccgctagaccaaggagccctctgatg
gccctgtccaggcataacagaaggctcgcactcctgtcttctggtcacttctcgctacgt
cccctcagctcctatctctgtatggcctggtttttcctaggttatgattgtagaactctc
aggcaccccatctctatcctggacaccgagcttgtcaccaaggcccagctgcagctgctg
tgctga

>gi568815576r:43726004_43962382|GENSCAN_predicted_peptide_7|92_aa
MVPSPAAASQSCPGGTERLLLRAEGGSAVAELQVKATPTNPRTRNTGGGHDSPPSPRPLA
RDAFAHWSLCACDPDVHTAAEDVLTAQAKSVH

>gi568815576r:43726004_43962382|GENSCAN_predicted_CDS_7|279_bp
atggttccctctccagccgctgcctcgcagagctgcccgggcgggacagagcgtctgctg
ctgagggcagaaggcgggtccgcggtggcggagctgcaggtcaaggcaactcccacaaac
ccccggacgcggaacactgggggcggccatgattccccgccttctccgcgccccctggct
cgcgatgccttcgctcattggtccttatgcgcctgtgacccggatgttcacacggccgcg
gaggacgttctgactgcgcaagcgaagagcgttcactga