Result of FASTA (omim) for pF1KB6793
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6793, 127 aa
  1>>>pF1KB6793 127 - 127 aa - 127 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8440+/-0.000323; mu= 8.8061+/- 0.020
 mean_var=71.2826+/-13.837, 0's: 0 Z-trim(115.9): 27  B-trim: 786 in 1/54
 Lambda= 0.151909
 statistics sampled from 26581 (26608) to 26581 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.685), E-opt: 0.2 (0.312), width:  16
 Scan time:  4.330

The best scores are:                                      opt bits E(85289)
NP_003078 (OMIM: 602998) gamma-synuclein isoform 1 ( 127)  756 174.0 5.6e-44
XP_011530506 (OMIM: 127750,163890,168601,605543) P ( 170)  396 95.2 4.1e-20
XP_011530507 (OMIM: 127750,163890,168601,605543) P ( 170)  396 95.2 4.1e-20
XP_011530509 (OMIM: 127750,163890,168601,605543) P ( 170)  396 95.2 4.1e-20
XP_011530508 (OMIM: 127750,163890,168601,605543) P ( 170)  396 95.2 4.1e-20
XP_011530505 (OMIM: 127750,163890,168601,605543) P ( 170)  396 95.2 4.1e-20
NP_000336 (OMIM: 127750,163890,168601,605543) alph ( 140)  388 93.4 1.2e-19
NP_001139526 (OMIM: 127750,163890,168601,605543) a ( 140)  388 93.4 1.2e-19
XP_016864051 (OMIM: 127750,163890,168601,605543) P ( 140)  388 93.4 1.2e-19
XP_011530510 (OMIM: 127750,163890,168601,605543) P ( 140)  388 93.4 1.2e-19
XP_016864052 (OMIM: 127750,163890,168601,605543) P ( 140)  388 93.4 1.2e-19
NP_001139527 (OMIM: 127750,163890,168601,605543) a ( 140)  388 93.4 1.2e-19
NP_009292 (OMIM: 127750,163890,168601,605543) alph ( 112)  383 92.3   2e-19
NP_001304964 (OMIM: 127750,602569) beta-synuclein  ( 104)  341 83.1 1.1e-16
NP_001304966 (OMIM: 127750,602569) beta-synuclein  ( 104)  341 83.1 1.1e-16
NP_003076 (OMIM: 127750,602569) beta-synuclein iso ( 134)  342 83.3 1.2e-16
XP_006714979 (OMIM: 127750,602569) PREDICTED: beta ( 134)  342 83.3 1.2e-16
NP_001001502 (OMIM: 127750,602569) beta-synuclein  ( 134)  342 83.3 1.2e-16
XP_006714977 (OMIM: 127750,602569) PREDICTED: beta ( 152)  342 83.3 1.3e-16
XP_011532942 (OMIM: 127750,602569) PREDICTED: beta ( 152)  342 83.3 1.3e-16
XP_006714978 (OMIM: 127750,602569) PREDICTED: beta ( 152)  342 83.3 1.3e-16
NP_001317049 (OMIM: 602998) gamma-synuclein isofor ( 126)  325 79.6 1.5e-15
NP_001304963 (OMIM: 127750,602569) beta-synuclein  ( 120)  222 57.0   9e-09
NP_001304965 (OMIM: 127750,602569) beta-synuclein  ( 120)  222 57.0   9e-09


>>NP_003078 (OMIM: 602998) gamma-synuclein isoform 1 [Ho  (127 aa)
 initn: 756 init1: 756 opt: 756  Z-score: 910.5  bits: 174.0 E(85289): 5.6e-44
Smith-Waterman score: 756; 100.0% identity (100.0% similar) in 127 aa overlap (1-127:1-127)

               10        20        30        40        50        60
pF1KB6 MDVFKKGFSIAKEGVVGAVEKTKQGVTEAAEKTKEGVMYVGAKTKENVVQSVTSVAEKTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MDVFKKGFSIAKEGVVGAVEKTKQGVTEAAEKTKEGVMYVGAKTKENVVQSVTSVAEKTK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 EQANAVSEAVVSSVNTVATKTVEEAENIAVTSGVVRKEDLRPSAPQQEGEASKEKEEVAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 EQANAVSEAVVSSVNTVATKTVEEAENIAVTSGVVRKEDLRPSAPQQEGEASKEKEEVAE
               70        80        90       100       110       120

              
pF1KB6 EAQSGGD
       :::::::
NP_003 EAQSGGD
              

>>XP_011530506 (OMIM: 127750,163890,168601,605543) PREDI  (170 aa)
 initn: 569 init1: 381 opt: 396  Z-score: 482.1  bits: 95.2 E(85289): 4.1e-20
Smith-Waterman score: 396; 60.2% identity (86.4% similar) in 118 aa overlap (1-118:1-116)

               10        20        30        40        50        60
pF1KB6 MDVFKKGFSIAKEGVVGAVEKTKQGVTEAAEKTKEGVMYVGAKTKENVVQSVTSVAEKTK
       :::: ::.: ::::::.:.:::::::.::: ::::::.:::.::::.::..:..::::::
XP_011 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 EQANAVSEAVVSSVNTVATKTVEEAENIAVTSGVVRKEDLRPSAPQQEGEASKEKEEVAE
       ::.. :. :::..:..:: :::: : .::...: :.:..:  . :. .   ::..:.:  
XP_011 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKKHPKYK--PSKRQENVVM
               70        80        90       100         110        

                                                           
pF1KB6 EAQSGGD                                             
                                                           
XP_011 FLVQVKKICFPQVGKPFSFLRFFSSFFFQVKAFWRSQYPSLKVARSHVYICN
      120       130       140       150       160       170

>>XP_011530507 (OMIM: 127750,163890,168601,605543) PREDI  (170 aa)
 initn: 569 init1: 381 opt: 396  Z-score: 482.1  bits: 95.2 E(85289): 4.1e-20
Smith-Waterman score: 396; 60.2% identity (86.4% similar) in 118 aa overlap (1-118:1-116)

               10        20        30        40        50        60
pF1KB6 MDVFKKGFSIAKEGVVGAVEKTKQGVTEAAEKTKEGVMYVGAKTKENVVQSVTSVAEKTK
       :::: ::.: ::::::.:.:::::::.::: ::::::.:::.::::.::..:..::::::
XP_011 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 EQANAVSEAVVSSVNTVATKTVEEAENIAVTSGVVRKEDLRPSAPQQEGEASKEKEEVAE
       ::.. :. :::..:..:: :::: : .::...: :.:..:  . :. .   ::..:.:  
XP_011 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKKHPKYK--PSKRQENVVM
               70        80        90       100         110        

                                                           
pF1KB6 EAQSGGD                                             
                                                           
XP_011 FLVQVKKICFPQVGKPFSFLRFFSSFFFQVKAFWRSQYPSLKVARSHVYICN
      120       130       140       150       160       170

>>XP_011530509 (OMIM: 127750,163890,168601,605543) PREDI  (170 aa)
 initn: 569 init1: 381 opt: 396  Z-score: 482.1  bits: 95.2 E(85289): 4.1e-20
Smith-Waterman score: 396; 60.2% identity (86.4% similar) in 118 aa overlap (1-118:1-116)

               10        20        30        40        50        60
pF1KB6 MDVFKKGFSIAKEGVVGAVEKTKQGVTEAAEKTKEGVMYVGAKTKENVVQSVTSVAEKTK
       :::: ::.: ::::::.:.:::::::.::: ::::::.:::.::::.::..:..::::::
XP_011 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 EQANAVSEAVVSSVNTVATKTVEEAENIAVTSGVVRKEDLRPSAPQQEGEASKEKEEVAE
       ::.. :. :::..:..:: :::: : .::...: :.:..:  . :. .   ::..:.:  
XP_011 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKKHPKYK--PSKRQENVVM
               70        80        90       100         110        

                                                           
pF1KB6 EAQSGGD                                             
                                                           
XP_011 FLVQVKKICFPQVGKPFSFLRFFSSFFFQVKAFWRSQYPSLKVARSHVYICN
      120       130       140       150       160       170

>>XP_011530508 (OMIM: 127750,163890,168601,605543) PREDI  (170 aa)
 initn: 569 init1: 381 opt: 396  Z-score: 482.1  bits: 95.2 E(85289): 4.1e-20
Smith-Waterman score: 396; 60.2% identity (86.4% similar) in 118 aa overlap (1-118:1-116)

               10        20        30        40        50        60
pF1KB6 MDVFKKGFSIAKEGVVGAVEKTKQGVTEAAEKTKEGVMYVGAKTKENVVQSVTSVAEKTK
       :::: ::.: ::::::.:.:::::::.::: ::::::.:::.::::.::..:..::::::
XP_011 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 EQANAVSEAVVSSVNTVATKTVEEAENIAVTSGVVRKEDLRPSAPQQEGEASKEKEEVAE
       ::.. :. :::..:..:: :::: : .::...: :.:..:  . :. .   ::..:.:  
XP_011 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKKHPKYK--PSKRQENVVM
               70        80        90       100         110        

                                                           
pF1KB6 EAQSGGD                                             
                                                           
XP_011 FLVQVKKICFPQVGKPFSFLRFFSSFFFQVKAFWRSQYPSLKVARSHVYICN
      120       130       140       150       160       170

>>XP_011530505 (OMIM: 127750,163890,168601,605543) PREDI  (170 aa)
 initn: 569 init1: 381 opt: 396  Z-score: 482.1  bits: 95.2 E(85289): 4.1e-20
Smith-Waterman score: 396; 60.2% identity (86.4% similar) in 118 aa overlap (1-118:1-116)

               10        20        30        40        50        60
pF1KB6 MDVFKKGFSIAKEGVVGAVEKTKQGVTEAAEKTKEGVMYVGAKTKENVVQSVTSVAEKTK
       :::: ::.: ::::::.:.:::::::.::: ::::::.:::.::::.::..:..::::::
XP_011 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 EQANAVSEAVVSSVNTVATKTVEEAENIAVTSGVVRKEDLRPSAPQQEGEASKEKEEVAE
       ::.. :. :::..:..:: :::: : .::...: :.:..:  . :. .   ::..:.:  
XP_011 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKKHPKYK--PSKRQENVVM
               70        80        90       100         110        

                                                           
pF1KB6 EAQSGGD                                             
                                                           
XP_011 FLVQVKKICFPQVGKPFSFLRFFSSFFFQVKAFWRSQYPSLKVARSHVYICN
      120       130       140       150       160       170

>>NP_000336 (OMIM: 127750,163890,168601,605543) alpha-sy  (140 aa)
 initn: 569 init1: 381 opt: 388  Z-score: 474.0  bits: 93.4 E(85289): 1.2e-19
Smith-Waterman score: 388; 62.7% identity (88.2% similar) in 110 aa overlap (1-107:1-110)

               10        20        30        40        50        60
pF1KB6 MDVFKKGFSIAKEGVVGAVEKTKQGVTEAAEKTKEGVMYVGAKTKENVVQSVTSVAEKTK
       :::: ::.: ::::::.:.:::::::.::: ::::::.:::.::::.::..:..::::::
NP_000 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK
               10        20        30        40        50        60

               70        80        90       100          110       
pF1KB6 EQANAVSEAVVSSVNTVATKTVEEAENIAVTSGVVRKEDL---RPSAPQQEGEASKEKEE
       ::.. :. :::..:..:: :::: : .::...: :.:..:   . .:::.          
NP_000 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKNEEGAPQEGILEDMPVDP
               70        80        90       100       110       120

       120                 
pF1KB6 VAEEAQSGGD          
                           
NP_000 DNEAYEMPSEEGYQDYEPEA
              130       140

>>NP_001139526 (OMIM: 127750,163890,168601,605543) alpha  (140 aa)
 initn: 569 init1: 381 opt: 388  Z-score: 474.0  bits: 93.4 E(85289): 1.2e-19
Smith-Waterman score: 388; 62.7% identity (88.2% similar) in 110 aa overlap (1-107:1-110)

               10        20        30        40        50        60
pF1KB6 MDVFKKGFSIAKEGVVGAVEKTKQGVTEAAEKTKEGVMYVGAKTKENVVQSVTSVAEKTK
       :::: ::.: ::::::.:.:::::::.::: ::::::.:::.::::.::..:..::::::
NP_001 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK
               10        20        30        40        50        60

               70        80        90       100          110       
pF1KB6 EQANAVSEAVVSSVNTVATKTVEEAENIAVTSGVVRKEDL---RPSAPQQEGEASKEKEE
       ::.. :. :::..:..:: :::: : .::...: :.:..:   . .:::.          
NP_001 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKNEEGAPQEGILEDMPVDP
               70        80        90       100       110       120

       120                 
pF1KB6 VAEEAQSGGD          
                           
NP_001 DNEAYEMPSEEGYQDYEPEA
              130       140

>>XP_016864051 (OMIM: 127750,163890,168601,605543) PREDI  (140 aa)
 initn: 569 init1: 381 opt: 388  Z-score: 474.0  bits: 93.4 E(85289): 1.2e-19
Smith-Waterman score: 388; 62.7% identity (88.2% similar) in 110 aa overlap (1-107:1-110)

               10        20        30        40        50        60
pF1KB6 MDVFKKGFSIAKEGVVGAVEKTKQGVTEAAEKTKEGVMYVGAKTKENVVQSVTSVAEKTK
       :::: ::.: ::::::.:.:::::::.::: ::::::.:::.::::.::..:..::::::
XP_016 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK
               10        20        30        40        50        60

               70        80        90       100          110       
pF1KB6 EQANAVSEAVVSSVNTVATKTVEEAENIAVTSGVVRKEDL---RPSAPQQEGEASKEKEE
       ::.. :. :::..:..:: :::: : .::...: :.:..:   . .:::.          
XP_016 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKNEEGAPQEGILEDMPVDP
               70        80        90       100       110       120

       120                 
pF1KB6 VAEEAQSGGD          
                           
XP_016 DNEAYEMPSEEGYQDYEPEA
              130       140

>>XP_011530510 (OMIM: 127750,163890,168601,605543) PREDI  (140 aa)
 initn: 569 init1: 381 opt: 388  Z-score: 474.0  bits: 93.4 E(85289): 1.2e-19
Smith-Waterman score: 388; 62.7% identity (88.2% similar) in 110 aa overlap (1-107:1-110)

               10        20        30        40        50        60
pF1KB6 MDVFKKGFSIAKEGVVGAVEKTKQGVTEAAEKTKEGVMYVGAKTKENVVQSVTSVAEKTK
       :::: ::.: ::::::.:.:::::::.::: ::::::.:::.::::.::..:..::::::
XP_011 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK
               10        20        30        40        50        60

               70        80        90       100          110       
pF1KB6 EQANAVSEAVVSSVNTVATKTVEEAENIAVTSGVVRKEDL---RPSAPQQEGEASKEKEE
       ::.. :. :::..:..:: :::: : .::...: :.:..:   . .:::.          
XP_011 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKNEEGAPQEGILEDMPVDP
               70        80        90       100       110       120

       120                 
pF1KB6 VAEEAQSGGD          
                           
XP_011 DNEAYEMPSEEGYQDYEPEA
              130       140




127 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 00:01:34 2016 done: Sat Nov  5 00:01:34 2016
 Total Scan time:  4.330 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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