GENSCAN 1.0	Date run:  4-Nov-116	Time: 20:47:58

Sequence gi568815590r:132938527_133160160 : 221634 bp : 45.76% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   2825   3016  192  0  0  107   80    41 0.066   4.66
 1.02 Intr +  10250  10417  168  0  0  108   89    91 0.645  11.12
 1.03 Intr +  22482  22547   66  1  0  102  105    35 0.889   5.48
 1.04 Intr +  24468  24548   81  1  0   97   84     4 0.512   0.51
 1.05 Intr +  28034  28171  138  0  0   93   99    88 0.994  10.84
 1.06 Intr +  29268  29444  177  1  0  111  105   129 0.994  16.79
 1.07 Intr +  30932  31043  112  0  1   38   94    52 0.934   0.24
 1.08 Intr +  33268  33347   80  1  2   87   85    74 0.848   6.19
 1.09 Intr +  34072  34215  144  2  0  106  100    88 0.953  12.05
 1.10 Intr +  34524  34638  115  1  1   79   68    24 0.402  -0.99
 1.11 Intr +  45171  45369  199  0  1   55   49   123 0.148   4.45
 1.12 Intr +  61442  61631  190  1  1   72   64    58 0.012   0.96
 1.13 Intr +  63247  63335   89  2  2   86   64    37 0.015   0.79
 1.14 Intr +  64454  64517   64  1  1   99   82    31 0.013   1.89
 1.15 Intr +  73375  73509  135  2  0   99   90    48 0.799   6.64
 1.16 Intr +  75074  75238  165  0  0  107  115    89 0.994  13.43
 1.17 Intr +  79252  79471  220  2  1  140   86   140 0.974  16.36
 1.18 Intr +  81076  81169   94  1  1   42   89    35 0.938  -1.03
 1.19 Intr +  83465  83624  160  1  1   85  105   275 0.948  28.46
 1.20 Intr +  91295  91497  203  0  2   19  115   248 0.588  19.60
 1.21 Intr +  91855  92004  150  0  0  -14   28   162 0.195   0.36
 1.22 Term +  95163  95219   57  2  0   91   48    59 0.657  -0.11
 1.23 PlyA +  95802  95807    6                               1.05

 2.15 PlyA -  96040  96035    6                               1.05
 2.14 Term - 100211  99998  214  1  1  104   42   232 0.995  16.90
 2.13 Intr - 101604 101472  133  1  1  111  109    35 0.818   7.60
 2.12 Intr - 106589 106458  132  0  0  116   99   144 0.994  18.92
 2.11 Intr - 109407 109304  104  2  2  106  113   142 0.999  18.32
 2.10 Intr - 111462 111376   87  2  0  109   92    35 0.971   5.09
 2.09 Intr - 112389 112290  100  1  1  121   61   108 0.961  10.57
 2.08 Intr - 113465 113402   64  2  1   69   47    28 0.069  -4.91
 2.07 Intr - 117357 117299   59  1  2   57   24   231 0.217  12.20
 2.06 Intr - 121674 121574  101  2  2  115  110    50 0.650   9.65
 2.05 Intr - 123194 123170   25  0  1   35   96     6 0.584  -6.82
 2.04 Intr - 123620 123465  156  0  0   52   92   108 0.701   7.58
 2.03 Intr - 132871 132744  128  0  2  115   45    16 0.056   0.32
 2.02 Intr - 134726 134516  211  0  1   72   47    78 0.076   0.07
 2.01 Init - 145397 145274  124  2  1   72   84    33 0.343   1.66
 2.00 Prom - 147242 147203   40                              -6.36

 3.00 Prom + 149147 149186   40                               0.04
 3.01 Init + 152105 152218  114  1  0   56   66    26 0.426  -2.59
 3.02 Intr + 156518 156682  165  1  0  101  105   187 0.995  21.86
 3.03 Intr + 157680 157847  168  2  0   52  121   154 0.999  15.24
 3.04 Intr + 174896 175077  182  1  2   89  119   188 0.998  20.67
 3.05 Intr + 178083 178190  108  0  0   91  110   135 0.980  15.40
 3.06 Intr + 193286 193420  135  2  0  100   53   147 0.998  12.08
 3.07 Intr + 194944 195134  191  1  2   70   69   222 0.958  17.73
 3.08 Term + 196150 196268  119  2  2  109   47   129 0.995   9.60
 3.09 PlyA + 196350 196355    6                               1.05

 4.00 Prom + 203382 203421   40                              -5.86
 4.01 Init + 205697 205899  203  1  2   53  113    87 0.433   6.05
 4.02 Intr + 212537 212644  108  2  0  102  101    41 0.744   6.20
 4.03 Term + 216662 216800  139  2  1  129   38    14 0.376  -2.06
 4.04 PlyA + 217018 217023    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term - 106091 105901  191  0  2   82   48   103 0.868   3.31


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815590r:132938527_133160160|GENSCAN_predicted_peptide_1|999_aa
XQGSTTTLQKRFEPTGFQNMLSGLYNPIVFSASGANLTDAHLFCLLACDRDLCCDGFVLT
QVQGGAIICGLLSSPSVLLCNVKDWMDPSEAWANATCPGVTYDQESHQVILRLGDQEFIK
SLTPLEGTQDTFTNFQQVYLWKDSDMGSRPESMGCRKDTVPRPASPTEAGLTTELFSPVD
LNQVIVNGNQSLSSQKHWLFKHLFSAQQANLWCLSRCVQEHSFCQLAEITESASLYFTCT
LYPEAQVCDDIMESNAQGCRLILPQMPKALFRKKVILEDKVKNFYTRLPFQKLMGISIRN
KVPMSEKSISNGFFECERRCDADPCCTGFGFLNVSQLKGGEVTCLTLNSLGIQMCSEENG
GAWRILDCGSPDIEVHTYPFGWYQKPRFSGYIQPLNSRRRVWSHLGLVSTLPEGEWDSLT
VLTRWIISPYRVMTRHTQSGGNVKNGVIYGQKGKEVSSLLVQKSWSLQLSATLGSTVTSN
DETLALSPGAQEDEGVATVTSLLLTFTLNIKFWLKKPCFTSDSKDAIMHSTMQTVVRAQA
LEVDVWEVKSLTNVRIMKVCWGPERLFLPERFQNVTVYPSQPVQIHMYLAKRTTPCFPKG
LENIPVSLDSWQSLALSSVVVDPSIRHFDVAHVSTAATSNFSAVRDLCLSECSQHEACLI
TTLQTQPGAVRCMFYADTQSCTHSLQGQNCRLLLREEATHIYRKPGISLLSYEASVPSVP
ISTHGRLLGRSQAIQVGTSWKQVDQFLGVPYAAPPLAERRFQAPEPLNWTGSWDASKPRA
SCWQPGTRTSTSPGVSEDCLYLNVFIPQNVAPNASVLVFFHNTMDREESEGWPAIDGSFL
AAVGNLIVVTASYRVGVFGFLSSGSGEVSGNWGLLDQVAALTWVQTHIRGFGGDPRRVSL
AADRGGADVASIHLLTARATNSQLFRRAVLMCRLREADDDGDEEEDDGGNDDNDVGDDTM
MLIMTIIMMEKITWLATAYALHIQYPPGKFLLSFRAQLK

>gi568815590r:132938527_133160160|GENSCAN_predicted_CDS_1|3000_bp
ngccaaggatccaccacaacacttcagaaacgctttgaacccactggtttccaaaacatg
ctttctggattgtacaaccccattgtgttctcagcctcaggagccaatctaaccgatgct
cacctcttctgtcttcttgcatgcgaccgtgatctgtgttgcgatggcttcgtcctcaca
caggttcaaggaggtgccatcatctgtgggttgctgagctcacccagtgtcctgctttgt
aatgtcaaagactggatggatccctctgaagcctgggctaatgctacatgtcctggtgtg
acatatgaccaggagagccaccaggtgatattgcgtcttggagaccaggagttcatcaag
agtctgacacccttagaaggaactcaagacacctttaccaattttcagcaggtttatctc
tggaaagattctgacatggggtctcggcctgagtctatgggatgtagaaaagacacagtg
ccaaggccagcatctccaacagaagcaggtttgacaacagaacttttctcccctgtggac
ctcaaccaggtcattgtcaatggaaatcaatcactatccagccagaagcactggcttttc
aagcacctgttttcagcccagcaggcaaacctatggtgcctttctcgttgtgtgcaggag
cactctttctgtcagctcgcagagataacagagagtgcatccttgtacttcacctgcacc
ctctacccagaggcacaggtgtgtgatgacatcatggagtccaatgcccagggctgcaga
ctgatcctgcctcagatgccaaaggccctgttccggaagaaagttatactggaagataaa
gtgaagaacttttacactcgcctgccgttccaaaaactgatggggatatccattagaaat
aaagtgcccatgtctgaaaaatctatttctaatgggttctttgaatgtgaacgacggtgc
gatgcggacccatgctgcactggctttggatttctaaatgtttcccagttaaaaggagga
gaggtgacatgtctcactctgaacagcttgggaattcagatgtgcagtgaggagaatgga
ggagcctggcgcattttggactgtggctctcctgacattgaagtccacacctatcccttc
ggatggtaccagaagcccaggtttagtggttatattcaacctttaaattcaaggaggaga
gtttggtcccacctgggcttagtcagcacgctgccagagggagagtgggacagcttgacg
gtcctaacaagatggattatttcgccctatcgagtaatgactagacacacacaatccgga
ggcaatgtcaagaatggtgttatttatggccaaaaagggaaagaagtcagctccttatta
gtgcaaaagagttggagcttacagttatcggccacactgggcagcactgtgacatctaat
gatgaaacactggccctgagtccaggagcccaggaagatgagggggtagcaactgtaaca
tcactactattaacattcactcttaatattaaattttggttgaaaaagccctgttttaca
agtgacagcaaggatgccatcatgcattcaacaatgcagacagtggtgagagctcaggct
ctggaggttgatgtatgggaggtcaaatccttaacaaatgttaggatcatgaaggtttgc
tgggggcctgaaagacttttcctgcctgaaaggtttcagaatgtcacggtttaccccagc
cagcctgtgcagattcacatgtacctggccaaacgaacaactccatgttttccaaaaggc
ttggagaacataccagtgtctctggactcgtggcagtccctggccctctcttcagtggtt
gttgatccatccattaggcactttgatgttgcccatgtcagcactgctgccaccagcaat
ttctctgctgtccgagacctctgtttgtcggaatgttcccaacatgaggcctgtctcatc
accactctgcaaacccaacctggggctgtgagatgtatgttctatgctgatactcaaagc
tgcacacatagtctgcagggtcagaactgccgacttctgcttcgtgaagaggccacccac
atctaccggaagccaggaatctctctgctcagctatgaggcatctgtaccttctgtgccc
atttccacccatggccggctgctgggcaggtcccaggccatccaggtgggtacctcatgg
aagcaagtggaccagttccttggagttccatatgctgccccgcccctggcagagaggcgc
ttccaggcaccagagcccttgaactggacaggctcctgggatgccagcaagccaagggcc
agctgctggcagccaggcaccagaacatccacgtctcctggagtcagtgaagattgtttg
tatctcaatgtgttcatccctcagaatgtggcccctaacgcgtctgtgctggtgttcttc
cacaacaccatggacagggaggagagtgaaggatggccggctatcgacggctccttcttg
gctgctgttggcaacctcatcgtggtcactgccagctaccgagtgggtgtcttcggcttc
ctgagttctgggtccggagaggtgagtggcaactgggggctgctggaccaggtggcggct
ctgacctgggtgcagacccacatccgaggatttggcggggaccctcggcgcgtgtccctg
gcagcagaccgtggcggggctgatgtggccagcatccaccttctcacggccagggccacc
aactcccaacttttccggagagctgtgctgatgtgccggctacgtgaggctgatgatgat
ggtgatgaggaggaggatgatggtggtaatgatgataatgatgttggtgatgatacaatg
atgttgataatgacaataattatgatggaaaaaataacctggttggccactgcatacgcc
ctgcatatccagtatccacctggaaagttcctgctgtccttcagggctcagctgaaatga

>gi568815590r:132938527_133160160|GENSCAN_predicted_peptide_2|545_aa
MQREGSQGENWEPLGAEGPSEEEVASLEPGRGSRALDEKGTYLQSRSEQQDGNIERLCRN
SCTCVNILGRPPKNSVTLYKSLCPFEYFPCKKKTSFSVCLKEVYMYYLGDNRPKDTVAGS
QALEPDAWIPVPPPALSSWANSDTLCECSGLGFPVTKINRIQKGWDLRFTLNMLPVLANP
SVVHYEFIAFASLVIVFGILLCISLSSLILSCRHRLWASPAAPGKKKEMGNSMKSTPAPA
ERPLPNPEELCALLLLLLLLLLLLLLLLNMSSVKAARMGLLFSPMLLTTGLDSDFLAVLS
DYPSPDISPPIFRRGEKLRVISDEGGWWKAISLSTGRESYIPGICVARVYHGWLFEGLGR
DKAEELLQLPDTKVGSFMIRESETKKGFYSLSVRHRQVKHYRIFRLPNNWYYISPRLTFQ
CLEDLVNHYSEVADGLCCVLTTPCLTQSTAAPAVRASSSPVTLRQKTVDWRRVSRLQEDP
EGTENPLGVDESLFSYGLRESIASYLSLTSEDNTSFDRKKKSISLMYGGSKRKSSFFSSP
PYFED

>gi568815590r:132938527_133160160|GENSCAN_predicted_CDS_2|1638_bp
atgcagagagaggggagccagggggaaaactgggaaccactgggtgcagagggaccatct
gaggaggaggtggcttcactagaacctggacggggcagcagggcactggatgagaagggc
acatatctacaatctagatcagagcagcaagatggcaacatagaaagattgtgccgtaat
agctgcacctgtgtcaacattctgggtcggccaccaaagaactctgtgactctgtacaag
tcactttgccccttcgagtattttccttgtaaaaagaagaccagtttctctgtatgtttg
aaagaagtttacatgtactatctaggagataataggcctaaggacacggtagctgggagc
caggctctagagccagatgcctggattccagtaccacctccagcactttccagctgggca
aactccgacacattatgtgaatgctctggccttggtttccccgtcacaaagatcaacagg
atccaaaaaggatgggatttgcgcttcactttaaacatgctgcccgttctagccaaccct
tctgtggtgcactatgagtttatagcttttgcgagcctggtcattgtcttcggaatatta
ctatgcattagcttgagcagtttgatcctgagctgcagacacaggctctgggcatcacca
gcggccccagggaaaaagaaagaaatgggaaacagcatgaaatccacccctgcgcctgcc
gagaggcccctgcccaacccggaggagctgtgcgccctgctgctgctgctgctgctgctg
ctgctgctgctgctgctgctgctgaacatgagctccgtgaaagcagcaagaatgggcttg
cttttctcacctatgctgcttacgacaggactggatagcgacttccttgccgtgctaagt
gactacccgtctcctgacatcagccccccgatattccgccgaggggagaaactgcgtgtg
atttctgatgaagggggctggtggaaagctatttctcttagcactggtcgagagagttac
atccctggaatatgtgtggccagagtttaccatggctggctgtttgagggcctgggcaga
gacaaggccgaggagctgctgcagctgccagacacaaaggtcggctccttcatgatcaga
gagagtgagaccaagaaagggttttactcactgtcggtgagacacaggcaggtaaagcat
taccgcattttccgtctgcccaacaactggtactacatttccccgaggctcaccttccag
tgcctggaggacctggtgaaccactattctgaggtggctgatggcctgtgctgtgtgctc
accacgccctgcctgacacaaagcacggctgccccagcagtgagggcctccagctcacct
gtcaccttgcgtcagaagactgtggactggaggagagtgtccagactgcaggaggacccc
gagggaacagagaacccgcttggggtagacgagtcccttttcagctatggccttcgagag
agcattgcctcttacctgtccctgaccagtgaggacaacacctcctttgatcgaaagaag
aaaagcatctccctgatgtatggtggcagcaagagaaagagctcattcttctcatcacca
ccttactttgaggactag

>gi568815590r:132938527_133160160|GENSCAN_predicted_peptide_3|393_aa
MNTTNFECKLHIRYFPSIVSFNLHISSVNADHNISILQGGSALSPAAVISHERAQQQAIA
LAKEVSCPMSSSQEVVSCLRQKPANVLNDAQTKLLAVSGPFHYWGPVIDGHFLREPPARA
LKRSLWVEVDLLIGSSQDDGLINRAKAVKQFEESRGRTSSKTAFYQALQNSLGGEDSDAR
VEAAATWYYSLEHSTDDYASFSRALENATRDYFIICPIIDMASAWAKRARGNVFMYHAPE
NYGHGSLELLADVQFALGLPFYPAYEGQFSLEEKSLSLKIMQYFSHFIRSGNPNYPYEFS
RKVPTFATPWPDFVPRAGGENYKEFSELLPNRQGLKKADCSFWSKYISSLKTSADGAKGG
QSAESEEEELTAGSGLREDLLSLQEPGSKTYSK

>gi568815590r:132938527_133160160|GENSCAN_predicted_CDS_3|1182_bp
atgaatacaaccaactttgagtgcaaattacacatcaggtattttccctccattgtctcc
tttaatctgcacatcagctctgtgaacgctgatcataatatctccattttacagggaggc
tccgcactctccccggccgccgtcatcagccatgagagggctcagcagcaggcaattgct
ttggcaaaggaggtcagttgccccatgtcatccagccaagaagtggtgtcctgcctccgc
cagaagcctgccaatgtcctcaatgatgcccagaccaagctcctggccgtgagtggccct
ttccactactggggtcctgtgatcgatggccacttcctccgtgagcctccagccagagca
ctgaagaggtctttatgggtagaggtcgatctgctcattgggagttctcaggacgacggg
ctcatcaacagagcaaaggctgtgaagcaatttgaggaaagtcgaggccggaccagtagc
aaaacagccttttaccaggcactgcagaattctctgggtggcgaggactcagatgcccgc
gtcgaggctgctgctacatggtattactctctggagcactccacggatgactatgcctcc
ttctcccgggctctggagaatgccacccgggactactttatcatctgccctataatcgac
atggccagtgcctgggcaaagagggcccgaggaaacgtcttcatgtaccatgctcctgaa
aactacggccatggcagcctggagctgctggcggatgttcagtttgccttggggcttccc
ttctacccagcctacgaggggcagttttctctggaggagaagagcctgtcgctgaaaatc
atgcagtacttttcccacttcatcagatcaggaaatcccaactacccttatgagttctca
cggaaagtacccacatttgcaaccccctggcctgactttgtaccccgtgctggtggagag
aactacaaggagttcagtgagctgctccccaatcgacagggcctgaagaaagccgactgc
tccttctggtccaagtacatctcgtctctgaagacatctgcagatggagccaagggcggg
cagtcagcagagagtgaagaggaggagttgacggctggatctgggctaagagaagatctc
ctaagcctccaggaaccaggctctaagacctacagcaagtga

>gi568815590r:132938527_133160160|GENSCAN_predicted_peptide_4|149_aa
MHLDSQVHVNLARGDFRAQSMPVSKVSPGFCRRTLVIQVRDHRPASCSFQTSPETSMSPL
EGNKLRPRKLGTRFSTLLQNITGAIYHLEHRLAISYTPVSLSGWIWSLLVGWPGNNSFAQ
AAQGGERKTYSPLPESKPLFFGYYKIIYK

>gi568815590r:132938527_133160160|GENSCAN_predicted_CDS_4|450_bp
atgcacctggacagccaagtacatgtaaatttggccagaggagacttcagggcccagagc
atgcccgtcagcaaagtctcccctggcttctgcagaagaactctggtcatccaggtgagg
gaccacaggccagccagctgttccttccagacgtctccagaaacctctatgagtcccttg
gaaggtaacaaactcagaccaaggaagctgggaactcgcttctcaactctcctacagaat
atcactggtgccatttaccacttagaacatcgacttgcaatcagttacacacctgtctcc
ctctctggatggatttggtccttgcttgttgggtggccaggaaataacagctttgcacag
gctgctcaaggtggtgagagaaagacctatagccccttgcctgaatccaaaccactgttt
tttggctattacaagataatttataagtga