Result of FASTA (omim) for
pF1KB6381
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6381, 272 aa
1>>>pF1KB6381 272 - 272 aa - 272 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.7747+/-0.000501; mu= 7.0420+/- 0.032
mean_var=371.7397+/-78.040, 0's: 0 Z-trim(117.9): 264 B-trim: 0 in 0/59
Lambda= 0.066520
statistics sampled from 30118 (30412) to 30118 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.691), E-opt: 0.2 (0.357), width: 16
Scan time: 6.940
The best scores are: opt bits E(85289)
NP_001034554 (OMIM: 600914) serine/arginine-rich s ( 272) 1772 183.7 3.2e-46
NP_008856 (OMIM: 600914) serine/arginine-rich spli ( 272) 1772 183.7 3.2e-46
NP_001307143 (OMIM: 600914) serine/arginine-rich s ( 272) 1772 183.7 3.2e-46
XP_005268056 (OMIM: 600914) PREDICTED: serine/argi ( 271) 1755 182.1 9.8e-46
XP_016877082 (OMIM: 600914) PREDICTED: serine/argi ( 271) 1755 182.1 9.8e-46
XP_005268057 (OMIM: 600914) PREDICTED: serine/argi ( 271) 1755 182.1 9.8e-46
XP_011535379 (OMIM: 600914) PREDICTED: serine/argi ( 239) 1095 118.6 1.1e-26
NP_006266 (OMIM: 601944) serine/arginine-rich spli ( 344) 1036 113.2 6.6e-25
NP_005617 (OMIM: 601940) serine/arginine-rich spli ( 494) 1014 111.4 3.4e-24
XP_011540253 (OMIM: 601940) PREDICTED: serine/argi ( 464) 982 108.3 2.8e-23
XP_016877083 (OMIM: 600914) PREDICTED: serine/argi ( 145) 902 99.8 3.1e-21
NP_008855 (OMIM: 600812) serine/arginine-rich spli ( 248) 593 70.5 3.5e-12
NP_001071634 (OMIM: 600812) serine/arginine-rich s ( 201) 456 57.2 2.8e-08
NP_003760 (OMIM: 601943) serine/arginine-rich spli ( 221) 335 45.6 9.3e-05
NP_003008 (OMIM: 603364) serine/arginine-rich spli ( 164) 291 41.2 0.0015
NP_001177934 (OMIM: 605221) serine/arginine-rich s ( 261) 287 41.2 0.0025
NP_003007 (OMIM: 600813) serine/arginine-rich spli ( 221) 274 39.8 0.0054
XP_016880431 (OMIM: 600813) PREDICTED: serine/argi ( 221) 274 39.8 0.0054
NP_001182356 (OMIM: 600813) serine/arginine-rich s ( 221) 274 39.8 0.0054
>>NP_001034554 (OMIM: 600914) serine/arginine-rich splic (272 aa)
initn: 1772 init1: 1772 opt: 1772 Z-score: 950.8 bits: 183.7 E(85289): 3.2e-46
Smith-Waterman score: 1772; 100.0% identity (100.0% similar) in 272 aa overlap (1-272:1-272)
10 20 30 40 50 60
pF1KB6 MSGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 ELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 WQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIEGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIEGS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 KRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPEKSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPEKSQ
190 200 210 220 230 240
250 260 270
pF1KB6 KRGSSSRSKSPASVDRQRSRSRSRSRSVDSGN
::::::::::::::::::::::::::::::::
NP_001 KRGSSSRSKSPASVDRQRSRSRSRSRSVDSGN
250 260 270
>>NP_008856 (OMIM: 600914) serine/arginine-rich splicing (272 aa)
initn: 1772 init1: 1772 opt: 1772 Z-score: 950.8 bits: 183.7 E(85289): 3.2e-46
Smith-Waterman score: 1772; 100.0% identity (100.0% similar) in 272 aa overlap (1-272:1-272)
10 20 30 40 50 60
pF1KB6 MSGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 MSGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 ELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 ELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 WQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIEGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 WQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIEGS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 KRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPEKSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 KRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPEKSQ
190 200 210 220 230 240
250 260 270
pF1KB6 KRGSSSRSKSPASVDRQRSRSRSRSRSVDSGN
::::::::::::::::::::::::::::::::
NP_008 KRGSSSRSKSPASVDRQRSRSRSRSRSVDSGN
250 260 270
>>NP_001307143 (OMIM: 600914) serine/arginine-rich splic (272 aa)
initn: 1772 init1: 1772 opt: 1772 Z-score: 950.8 bits: 183.7 E(85289): 3.2e-46
Smith-Waterman score: 1772; 100.0% identity (100.0% similar) in 272 aa overlap (1-272:1-272)
10 20 30 40 50 60
pF1KB6 MSGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 ELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 WQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIEGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIEGS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 KRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPEKSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPEKSQ
190 200 210 220 230 240
250 260 270
pF1KB6 KRGSSSRSKSPASVDRQRSRSRSRSRSVDSGN
::::::::::::::::::::::::::::::::
NP_001 KRGSSSRSKSPASVDRQRSRSRSRSRSVDSGN
250 260 270
>>XP_005268056 (OMIM: 600914) PREDICTED: serine/arginine (271 aa)
initn: 1229 init1: 1229 opt: 1755 Z-score: 942.0 bits: 182.1 E(85289): 9.8e-46
Smith-Waterman score: 1755; 99.6% identity (99.6% similar) in 272 aa overlap (1-272:1-271)
10 20 30 40 50 60
pF1KB6 MSGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MSGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 ELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 WQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIEGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 WQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIEGS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 KRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPEKSQ
::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KRH-RSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPEKSQ
190 200 210 220 230
250 260 270
pF1KB6 KRGSSSRSKSPASVDRQRSRSRSRSRSVDSGN
::::::::::::::::::::::::::::::::
XP_005 KRGSSSRSKSPASVDRQRSRSRSRSRSVDSGN
240 250 260 270
>>XP_016877082 (OMIM: 600914) PREDICTED: serine/arginine (271 aa)
initn: 1229 init1: 1229 opt: 1755 Z-score: 942.0 bits: 182.1 E(85289): 9.8e-46
Smith-Waterman score: 1755; 99.6% identity (99.6% similar) in 272 aa overlap (1-272:1-271)
10 20 30 40 50 60
pF1KB6 MSGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 ELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 WQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIEGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIEGS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 KRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPEKSQ
::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KRH-RSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPEKSQ
190 200 210 220 230
250 260 270
pF1KB6 KRGSSSRSKSPASVDRQRSRSRSRSRSVDSGN
::::::::::::::::::::::::::::::::
XP_016 KRGSSSRSKSPASVDRQRSRSRSRSRSVDSGN
240 250 260 270
>>XP_005268057 (OMIM: 600914) PREDICTED: serine/arginine (271 aa)
initn: 1229 init1: 1229 opt: 1755 Z-score: 942.0 bits: 182.1 E(85289): 9.8e-46
Smith-Waterman score: 1755; 99.6% identity (99.6% similar) in 272 aa overlap (1-272:1-271)
10 20 30 40 50 60
pF1KB6 MSGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MSGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 ELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 WQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIEGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 WQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIEGS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 KRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPEKSQ
::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KRH-RSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPEKSQ
190 200 210 220 230
250 260 270
pF1KB6 KRGSSSRSKSPASVDRQRSRSRSRSRSVDSGN
::::::::::::::::::::::::::::::::
XP_005 KRGSSSRSKSPASVDRQRSRSRSRSRSVDSGN
240 250 260 270
>>XP_011535379 (OMIM: 600914) PREDICTED: serine/arginine (239 aa)
initn: 1095 init1: 1095 opt: 1095 Z-score: 600.2 bits: 118.6 E(85289): 1.1e-26
Smith-Waterman score: 1470; 87.9% identity (87.9% similar) in 272 aa overlap (1-272:1-239)
10 20 30 40 50 60
pF1KB6 MSGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 ELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVS
:::::: :::::::::::::::::::::
XP_011 ELCSER---------------------------------NAPPVRTENRLIVENLSSRVS
70 80
130 140 150 160 170 180
pF1KB6 WQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIEGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 WQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIEGS
90 100 110 120 130 140
190 200 210 220 230 240
pF1KB6 KRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPEKSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPEKSQ
150 160 170 180 190 200
250 260 270
pF1KB6 KRGSSSRSKSPASVDRQRSRSRSRSRSVDSGN
::::::::::::::::::::::::::::::::
XP_011 KRGSSSRSKSPASVDRQRSRSRSRSRSVDSGN
210 220 230
>>NP_006266 (OMIM: 601944) serine/arginine-rich splicing (344 aa)
initn: 1608 init1: 522 opt: 1036 Z-score: 568.2 bits: 113.2 E(85289): 6.6e-25
Smith-Waterman score: 1048; 62.5% identity (79.3% similar) in 280 aa overlap (5-267:3-280)
10 20 30 40 50 60
pF1KB6 MSGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGK
::.::::. .::::..:::.::::. ..::: :.::::::: ::::::::::.::
NP_006 MPRVYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGK
10 20 30 40 50
70 80 90 100 110
pF1KB6 ELCSERVTIEHARA--RSRGGRGRGRYSDR--FSSRRPRNDRRNAPPVRTENRLIVENLS
:::.::: .::::. :.: : . : : .:::: . . .:::::: ::::::::
NP_006 ELCGERVIVEHARGPRRDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEYRLIVENLS
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB6 SRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKL
:: ::::::::::::::::.::::. . ::::.:: ::.:.: :..::.: :::::.:.:
NP_006 SRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNIRL
120 130 140 150 160 170
180 190 200 210 220
pF1KB6 IE------------GSKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSR
:: ::. .:::: :::::.: :::::::: :.:: : :::::..:::::
NP_006 IEDKPRTSHRRSYSGSRSRSRSRRRSRSRSRRSSRSRSRSISKSR-SRSRSRSKGRSRSR
180 190 200 210 220 230
230 240 250 260 270
pF1KB6 SKSR-SVSRSPVPEKSQKRGSSSRSKSPASVDRQRSRSRSRSRSVDSGN
::.: : :.: ::. ::: :.:.: .. . ..:::::::::
NP_006 SKGRKSRSKSKSKPKSD-RGSHSHSRSRSKDEYEKSRSRSRSRSPKENGKGDIKSKSRSR
240 250 260 270 280 290
NP_006 SQSRSNSPLPVPPSKARSVSPPPKRATSRSRSRSRSKSRSRSRSSSRD
300 310 320 330 340
>>NP_005617 (OMIM: 601940) serine/arginine-rich splicing (494 aa)
initn: 1235 init1: 527 opt: 1014 Z-score: 555.3 bits: 111.4 E(85289): 3.4e-24
Smith-Waterman score: 1014; 61.0% identity (80.9% similar) in 277 aa overlap (5-269:3-271)
10 20 30 40 50 60
pF1KB6 MSGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGK
::.::::. :::.::::::::::.: ..::: :.:::::.: ::::::::::.::
NP_005 MPRVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGK
10 20 30 40 50
70 80 90 100 110
pF1KB6 ELCSERVTIEHARA-RSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRV
.::.::: .::::. : :. : :: . .. :: :. . ::.::: ::::::::::
NP_005 DLCGERVIVEHARGPRRDGSYGSGRSG--YGYRRSGRDKYG-PPTRTEYRLIVENLSSRC
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB6 SWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIE-
:::::::.::::::::.::::. . ::::.::.::.:.: :.:::.: :.:::::.:.:
NP_005 SWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRLVED
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB6 --GSKR---HSRSRSRSRSRTRSSSRSRSRSRSRSRKS-YSRSRSRSRSRSRSKSRSVSR
::.: .:::::.::::.:: .::::: : :: .:.::::::: :::.:.: ::
NP_005 KPGSRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSRSRSKSRSR
180 190 200 210 220 230
240 250 260 270
pF1KB6 SPVPEKSQKRGSSSRSKSPASVDRQRSRS----RSRSRSVDSGN
: .:..:... .:.:: : ...:::: .:::.: :
NP_005 S----QSRSRSKKEKSRSP-SKEKSRSRSHSAGKSRSKSKDQAEEKIQNNDNVGKPKSRS
240 250 260 270 280 290
NP_005 PSRHKSKSKSRSRSQERRVEEEKRGSVSRGRSQEKSLRQSRSRSRSKGGSRSRSRSRSKS
300 310 320 330 340 350
>>XP_011540253 (OMIM: 601940) PREDICTED: serine/arginine (464 aa)
initn: 1740 init1: 548 opt: 982 Z-score: 539.0 bits: 108.3 E(85289): 2.8e-23
Smith-Waterman score: 1017; 61.2% identity (80.8% similar) in 276 aa overlap (5-267:3-274)
10 20 30 40 50 60
pF1KB6 MSGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGK
::.::::. :::.::::::::::.: ..::: :.:::::.: ::::::::::.::
XP_011 MPRVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGK
10 20 30 40 50
70 80 90 100 110
pF1KB6 ELCSERVTIEHARA-RSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRV
.::.::: .::::. : :. : :: . .. :: :. . ::.::: ::::::::::
XP_011 DLCGERVIVEHARGPRRDGSYGSGRSG--YGYRRSGRDKYG-PPTRTEYRLIVENLSSRC
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB6 SWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIE-
:::::::.::::::::.::::. . ::::.::.::.:.: :.:::.: :.:::::.:.:
XP_011 SWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRLVED
120 130 140 150 160 170
180 190 200 210 220
pF1KB6 --GSKR---HSRSRSRSRS--RTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRS----KS
::.: .:::::.::: :.::.:::::.:::::.: ::: :. .::::: ::
XP_011 KPGSRRRRSYSRSRSHSRSGSRSRSKSRSRSQSRSRSKKEKSRSPSKEKSRSRSHSAGKS
180 190 200 210 220 230
230 240 250 260 270
pF1KB6 RSVSRSPVPEKSQKRGSSSRSKSPASVDRQRSRSRSRSRSVDSGN
:: :.. . :: :. . .. :: : .:..:.:.:::::
XP_011 RSKSKDQAEEKIQNNDNVGKPKS-RSPSRHKSKSKSRSRSQERRVEEEKRGSVSRGRSQE
240 250 260 270 280 290
XP_011 KSLRQSRSRSRSKGGSRSRSRSRSKSKDKRKGRKRSREESRSRSRSRSKSERSRKRGSKR
300 310 320 330 340 350
272 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 20:42:50 2016 done: Fri Nov 4 20:42:51 2016
Total Scan time: 6.940 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]