Result of FASTA (ccds) for pF1KB6336
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6336, 290 aa
  1>>>pF1KB6336 290 - 290 aa - 290 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.2053+/-0.000804; mu= 5.1208+/- 0.049
 mean_var=211.6065+/-41.349, 0's: 0 Z-trim(115.8): 44  B-trim: 6 in 1/53
 Lambda= 0.088168
 statistics sampled from 16336 (16380) to 16336 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.795), E-opt: 0.2 (0.503), width:  16
 Scan time:  2.710

The best scores are:                                      opt bits E(32554)
CCDS48037.1 SET gene_id:6418|Hs108|chr9            ( 290) 1968 261.9 3.8e-70
CCDS72821.1 SETSIP gene_id:646817|Hs108|chr1       ( 302) 1806 241.4 6.3e-64
CCDS6907.1 SET gene_id:6418|Hs108|chr9             ( 277) 1715 229.7 1.8e-60
CCDS59150.1 SET gene_id:6418|Hs108|chr9            ( 266) 1712 229.3 2.3e-60
CCDS59149.1 SET gene_id:6418|Hs108|chr9            ( 268) 1708 228.8 3.3e-60
CCDS5106.1 TSPYL4 gene_id:23270|Hs108|chr6         ( 414)  520 77.9 1.4e-14


>>CCDS48037.1 SET gene_id:6418|Hs108|chr9                 (290 aa)
 initn: 1968 init1: 1968 opt: 1968  Z-score: 1372.7  bits: 261.9 E(32554): 3.8e-70
Smith-Waterman score: 1968; 100.0% identity (100.0% similar) in 290 aa overlap (1-290:1-290)

               10        20        30        40        50        60
pF1KB6 MAPKRQSPLPPQKKKPRPPPALGPEETSASAGLPKKGEKEQQEAIEHIDEVQNEIDRLNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 MAPKRQSPLPPQKKKPRPPPALGPEETSASAGLPKKGEKEQQEAIEHIDEVQNEIDRLNE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 QASEEILKVEQKYNKLRQPFFQKRSELIAKIPNFWVTTFVNHPQVSALLGEEDEEALHYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 QASEEILKVEQKYNKLRQPFFQKRSELIAKIPNFWVTTFVNHPQVSALLGEEDEEALHYL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 TRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEFHLNESGDPSSKSTEIKWKSGKDLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 TRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEFHLNESGDPSSKSTEIKWKSGKDLT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 KRSSQTQNKASRKRQHEEPESFFTWFTDHSDAGADELGEVIKDDIWPNPLQYYLVPDMDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 KRSSQTQNKASRKRQHEEPESFFTWFTDHSDAGADELGEVIKDDIWPNPLQYYLVPDMDD
              190       200       210       220       230       240

              250       260       270       280       290
pF1KB6 EEGEGEEDDDDDEEEEGLEDIDEEGDEDEGEEDEDDDEGEEGEEDEGEDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 EEGEGEEDDDDDEEEEGLEDIDEEGDEDEGEEDEDDDEGEEGEEDEGEDD
              250       260       270       280       290

>>CCDS72821.1 SETSIP gene_id:646817|Hs108|chr1            (302 aa)
 initn: 1992 init1: 1664 opt: 1806  Z-score: 1261.1  bits: 241.4 E(32554): 6.3e-64
Smith-Waterman score: 1806; 93.2% identity (95.9% similar) in 294 aa overlap (1-290:11-302)

                         10        20        30        40        50
pF1KB6           MAPKRQSPLPPQKKKPRPPPALGPEETSASAGLPKKGEKEQQEAIEHIDE
                 :::::::::: :::::::::::: ::::::::::::::::::::::::::
CCDS72 MVWFLDFPNSMAPKRQSPLPLQKKKPRPPPALGLEETSASAGLPKKGEKEQQEAIEHIDE
               10        20        30        40        50        60

               60        70        80        90       100       110
pF1KB6 VQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAKIPNFWVTTFVNHPQVSALLG
       ::::::::::: :::::::::::::::::::::::::::::::: :::::::::::.:::
CCDS72 VQNEIDRLNEQDSEEILKVEQKYNKLRQPFFQKRSELIAKIPNFGVTTFVNHPQVSSLLG
               70        80        90       100       110       120

              120       130       140       150       160       170
pF1KB6 EEDEEALHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEFHLNESGDPSSKSTE
       :::::::::::.:::::::::::::::::::::::::::::.:::::::::::::::::.
CCDS72 EEDEEALHYLTKVEVTEFEDIKSGYRIDFYFDENPYFENKVFSKEFHLNESGDPSSKSTK
              130       140       150       160       170       180

              180       190       200       210       220       230
pF1KB6 IKWKSGKDLTKRSSQTQNKASRKRQHEEPESFFTWFTDHSDAGADELGEVIKDDIWPNPL
       ::::::::.:::::::::::::::::::::::::::::::::::::: ::::::::::::
CCDS72 IKWKSGKDVTKRSSQTQNKASRKRQHEEPESFFTWFTDHSDAGADELEEVIKDDIWPNPL
              190       200       210       220       230       240

              240       250           260       270       280      
pF1KB6 QYYLVPDMDDEEGEGEEDDDDDEE----EEGLEDIDEEGDEDEGEEDEDDDEGEEGEEDE
       ::::::::::::: ::.:::::..    :: :::::: ::::::::::::::::::::::
CCDS72 QYYLVPDMDDEEG-GEDDDDDDDDGDEGEEELEDIDE-GDEDEGEEDEDDDEGEEGEEDE
              250        260       270        280       290        

        290
pF1KB6 GEDD
       ::::
CCDS72 GEDD
      300  

>>CCDS6907.1 SET gene_id:6418|Hs108|chr9                  (277 aa)
 initn: 1715 init1: 1715 opt: 1715  Z-score: 1199.1  bits: 229.7 E(32554): 1.8e-60
Smith-Waterman score: 1715; 96.2% identity (97.4% similar) in 266 aa overlap (25-290:12-277)

               10        20        30        40        50        60
pF1KB6 MAPKRQSPLPPQKKKPRPPPALGPEETSASAGLPKKGEKEQQEAIEHIDEVQNEIDRLNE
                               : .:   :  . .:::::::::::::::::::::::
CCDS69              MSAPAAKVSKKELNSNHDGADETSEKEQQEAIEHIDEVQNEIDRLNE
                            10        20        30        40       

               70        80        90       100       110       120
pF1KB6 QASEEILKVEQKYNKLRQPFFQKRSELIAKIPNFWVTTFVNHPQVSALLGEEDEEALHYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 QASEEILKVEQKYNKLRQPFFQKRSELIAKIPNFWVTTFVNHPQVSALLGEEDEEALHYL
        50        60        70        80        90       100       

              130       140       150       160       170       180
pF1KB6 TRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEFHLNESGDPSSKSTEIKWKSGKDLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 TRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEFHLNESGDPSSKSTEIKWKSGKDLT
       110       120       130       140       150       160       

              190       200       210       220       230       240
pF1KB6 KRSSQTQNKASRKRQHEEPESFFTWFTDHSDAGADELGEVIKDDIWPNPLQYYLVPDMDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 KRSSQTQNKASRKRQHEEPESFFTWFTDHSDAGADELGEVIKDDIWPNPLQYYLVPDMDD
       170       180       190       200       210       220       

              250       260       270       280       290
pF1KB6 EEGEGEEDDDDDEEEEGLEDIDEEGDEDEGEEDEDDDEGEEGEEDEGEDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 EEGEGEEDDDDDEEEEGLEDIDEEGDEDEGEEDEDDDEGEEGEEDEGEDD
       230       240       250       260       270       

>>CCDS59150.1 SET gene_id:6418|Hs108|chr9                 (266 aa)
 initn: 1712 init1: 1712 opt: 1712  Z-score: 1197.2  bits: 229.3 E(32554): 2.3e-60
Smith-Waterman score: 1712; 98.8% identity (98.8% similar) in 257 aa overlap (34-290:10-266)

            10        20        30        40        50        60   
pF1KB6 KRQSPLPPQKKKPRPPPALGPEETSASAGLPKKGEKEQQEAIEHIDEVQNEIDRLNEQAS
                                     :   ::::::::::::::::::::::::::
CCDS59                      MMPRSHQPPPPPHEKEQQEAIEHIDEVQNEIDRLNEQAS
                                    10        20        30         

            70        80        90       100       110       120   
pF1KB6 EEILKVEQKYNKLRQPFFQKRSELIAKIPNFWVTTFVNHPQVSALLGEEDEEALHYLTRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 EEILKVEQKYNKLRQPFFQKRSELIAKIPNFWVTTFVNHPQVSALLGEEDEEALHYLTRV
      40        50        60        70        80        90         

           130       140       150       160       170       180   
pF1KB6 EVTEFEDIKSGYRIDFYFDENPYFENKVLSKEFHLNESGDPSSKSTEIKWKSGKDLTKRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 EVTEFEDIKSGYRIDFYFDENPYFENKVLSKEFHLNESGDPSSKSTEIKWKSGKDLTKRS
     100       110       120       130       140       150         

           190       200       210       220       230       240   
pF1KB6 SQTQNKASRKRQHEEPESFFTWFTDHSDAGADELGEVIKDDIWPNPLQYYLVPDMDDEEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 SQTQNKASRKRQHEEPESFFTWFTDHSDAGADELGEVIKDDIWPNPLQYYLVPDMDDEEG
     160       170       180       190       200       210         

           250       260       270       280       290
pF1KB6 EGEEDDDDDEEEEGLEDIDEEGDEDEGEEDEDDDEGEEGEEDEGEDD
       :::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 EGEEDDDDDEEEEGLEDIDEEGDEDEGEEDEDDDEGEEGEEDEGEDD
     220       230       240       250       260      

>>CCDS59149.1 SET gene_id:6418|Hs108|chr9                 (268 aa)
 initn: 1706 init1: 1706 opt: 1708  Z-score: 1194.4  bits: 228.8 E(32554): 3.3e-60
Smith-Waterman score: 1708; 98.8% identity (98.8% similar) in 257 aa overlap (34-290:12-268)

            10        20        30        40        50        60   
pF1KB6 KRQSPLPPQKKKPRPPPALGPEETSASAGLPKKGEKEQQEAIEHIDEVQNEIDRLNEQAS
                                     :   ::::::::::::::::::::::::::
CCDS59                    MGCRDLLPSLKPTLLEKEQQEAIEHIDEVQNEIDRLNEQAS
                                  10        20        30        40 

            70        80        90       100       110       120   
pF1KB6 EEILKVEQKYNKLRQPFFQKRSELIAKIPNFWVTTFVNHPQVSALLGEEDEEALHYLTRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 EEILKVEQKYNKLRQPFFQKRSELIAKIPNFWVTTFVNHPQVSALLGEEDEEALHYLTRV
              50        60        70        80        90       100 

           130       140       150       160       170       180   
pF1KB6 EVTEFEDIKSGYRIDFYFDENPYFENKVLSKEFHLNESGDPSSKSTEIKWKSGKDLTKRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 EVTEFEDIKSGYRIDFYFDENPYFENKVLSKEFHLNESGDPSSKSTEIKWKSGKDLTKRS
             110       120       130       140       150       160 

           190       200       210       220       230       240   
pF1KB6 SQTQNKASRKRQHEEPESFFTWFTDHSDAGADELGEVIKDDIWPNPLQYYLVPDMDDEEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 SQTQNKASRKRQHEEPESFFTWFTDHSDAGADELGEVIKDDIWPNPLQYYLVPDMDDEEG
             170       180       190       200       210       220 

           250       260       270       280       290
pF1KB6 EGEEDDDDDEEEEGLEDIDEEGDEDEGEEDEDDDEGEEGEEDEGEDD
       :::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 EGEEDDDDDEEEEGLEDIDEEGDEDEGEEDEDDDEGEEGEEDEGEDD
             230       240       250       260        

>>CCDS5106.1 TSPYL4 gene_id:23270|Hs108|chr6              (414 aa)
 initn: 494 init1: 341 opt: 520  Z-score: 375.3  bits: 77.9 E(32554): 1.4e-14
Smith-Waterman score: 520; 39.3% identity (72.3% similar) in 191 aa overlap (45-235:204-387)

           20        30        40        50        60        70    
pF1KB6 KPRPPPALGPEETSASAGLPKKGEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYN
                                     .. .. ...:.. .: ::.. .:..:.:..
CCDS51 EEKKVVQKEKKVAGGVKEETRPRAPKINNCMDSLEAIDQELSNVNAQADRAFLQLERKFG
           180       190       200       210       220       230   

           80        90       100       110       120       130    
pF1KB6 KLRQPFFQKRSELIAKIPNFWVTTFVNHPQVSALLGEEDEEALHYLTRVEVTEFEDIKSG
       ..:.  .:.:: .: .::.::::.: ::::.: ... .::. :.:.  .:: :..  ..:
CCDS51 RMRRLHMQRRSFIIQNIPGFWVTAFRNHPQLSPMISGQDEDMLRYMINLEVEELKHPRAG
           240       250       260       270       280       290   

          140       150       160       170       180       190    
pF1KB6 YRIDFYFDENPYFENKVLSKEFHLNESGDPSSKSTEIKWKSGKDLTKRSSQTQNKASRKR
        .. : :. ::::.:. : ::..   ::   : :: :.:. :.:        : .  :.:
CCDS51 CKFKFIFQGNPYFRNEGLVKEYERRSSGRVVSLSTPIRWHRGQD-------PQAHIHRNR
           300       310       320       330              340      

          200       210       220       230       240       250    
pF1KB6 QHEEPESFFTWFTDHSDAGADELGEVIKDDIWPNPLQYYLVPDMDDEEGEGEEDDDDDEE
       . .   :::.::.:::    :...:.:: ..:::::::::.                   
CCDS51 EGNTIPSFFNWFSDHSLLEFDRIAEIIKGELWPNPLQYYLMGEGPRRGIRGPPRQPVESA
        350       360       370       380       390       400      

          260       270       280       290
pF1KB6 EEGLEDIDEEGDEDEGEEDEDDDEGEEGEEDEGEDD
                                           
CCDS51 RSFRFQSG                            
        410                                




290 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 22:45:39 2016 done: Fri Nov  4 22:45:40 2016
 Total Scan time:  2.710 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com