Result of FASTA (omim) for pF1KB6415
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6415, 308 aa
  1>>>pF1KB6415 308 - 308 aa - 308 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1627+/-0.00033; mu= 14.1749+/- 0.021
 mean_var=129.3694+/-25.983, 0's: 0 Z-trim(120.4): 255  B-trim: 816 in 1/53
 Lambda= 0.112761
 statistics sampled from 35248 (35560) to 35248 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.752), E-opt: 0.2 (0.417), width:  16
 Scan time:  7.780

The best scores are:                                      opt bits E(85289)
NP_004156 (OMIM: 179503) GTP-binding protein RAD [ ( 308) 2048 343.7 2.7e-94
NP_001122322 (OMIM: 179503) GTP-binding protein RA ( 308) 2048 343.7 2.7e-94
NP_859053 (OMIM: 600164) GTP-binding protein GEM [ ( 296) 1073 185.1 1.5e-46
NP_005252 (OMIM: 600164) GTP-binding protein GEM [ ( 296) 1073 185.1 1.5e-46
NP_054731 (OMIM: 610388) GTP-binding protein REM 1 ( 298)  878 153.4 5.2e-37
NP_775798 (OMIM: 616955) GTP-binding protein REM 2 ( 340)  814 143.0 7.8e-34
XP_016876548 (OMIM: 616955) PREDICTED: GTP-binding ( 372)  814 143.1 8.3e-34
XP_005267440 (OMIM: 616955) PREDICTED: GTP-binding ( 341)  810 142.4 1.2e-33
XP_016876547 (OMIM: 616955) PREDICTED: GTP-binding ( 373)  810 142.4 1.3e-33
XP_005260461 (OMIM: 610388) PREDICTED: GTP-binding ( 306)  763 134.7 2.3e-31
XP_016883322 (OMIM: 610388) PREDICTED: GTP-binding ( 306)  763 134.7 2.3e-31
XP_011527097 (OMIM: 610388) PREDICTED: GTP-binding ( 304)  762 134.5 2.5e-31
XP_016868804 (OMIM: 600164) PREDICTED: GTP-binding ( 208)  608 109.3 6.8e-24
XP_011534820 (OMIM: 616955) PREDICTED: GTP-binding ( 279)  482 88.9 1.2e-17
NP_001243750 (OMIM: 609591,615355) GTP-binding pro ( 236)  397 75.0 1.6e-13
NP_002921 (OMIM: 609592) GTP-binding protein Rit2  ( 217)  390 73.9 3.3e-13
NP_008843 (OMIM: 609591,615355) GTP-binding protei ( 219)  390 73.9 3.3e-13
NP_005393 (OMIM: 179550) ras-related protein Ral-A ( 206)  374 71.2 1.9e-12
XP_011513768 (OMIM: 179550) PREDICTED: ras-related ( 206)  374 71.2 1.9e-12
XP_006715825 (OMIM: 179550) PREDICTED: ras-related ( 206)  374 71.2 1.9e-12
XP_005263781 (OMIM: 179551) PREDICTED: ras-related ( 228)  353 67.9 2.2e-11
XP_016860110 (OMIM: 179551) PREDICTED: ras-related ( 228)  353 67.9 2.2e-11
XP_011509875 (OMIM: 179551) PREDICTED: ras-related ( 229)  353 67.9 2.2e-11
NP_002872 (OMIM: 179551) ras-related protein Ral-B ( 206)  348 67.0 3.6e-11
XP_005263785 (OMIM: 179551) PREDICTED: ras-related ( 206)  348 67.0 3.6e-11
XP_016860111 (OMIM: 179551) PREDICTED: ras-related ( 206)  348 67.0 3.6e-11
XP_005263784 (OMIM: 179551) PREDICTED: ras-related ( 206)  348 67.0 3.6e-11
XP_005263786 (OMIM: 179551) PREDICTED: ras-related ( 206)  348 67.0 3.6e-11
NP_001243749 (OMIM: 609591,615355) GTP-binding pro ( 183)  335 64.8 1.4e-10
NP_116307 (OMIM: 612664) ras-related and estrogen- ( 199)  329 63.9   3e-10
NP_056461 (OMIM: 179530) ras-related protein Rap-1 ( 184)  316 61.8 1.2e-09
NP_001010942 (OMIM: 179530) ras-related protein Ra ( 184)  316 61.8 1.2e-09
NP_060064 (OMIM: 607863) GTP-binding protein Di-Ra ( 199)  311 61.0 2.3e-09
NP_036382 (OMIM: 600098) ras-related protein R-Ras ( 204)  311 61.0 2.3e-09
XP_016874782 (OMIM: 109800,114480,137215,163200,19 ( 227)  309 60.7 3.2e-09
NP_066361 (OMIM: 179540) ras-related protein Rap-2 ( 183)  306 60.1 3.8e-09
XP_006719132 (OMIM: 109800,114480,137215,163200,19 ( 189)  304 59.8 4.9e-09
NP_203524 (OMIM: 109800,114480,137215,163200,19007 ( 189)  304 59.8 4.9e-09
NP_001177655 (OMIM: 612664) ras-related and estrog ( 180)  303 59.6 5.3e-09
NP_006261 (OMIM: 165090) ras-related protein R-Ras ( 218)  304 59.9 5.4e-09
NP_002877 (OMIM: 179541) ras-related protein Rap-2 ( 183)  302 59.5   6e-09
NP_001278825 (OMIM: 179520) ras-related protein Ra ( 184)  302 59.5   6e-09
NP_001010935 (OMIM: 179520) ras-related protein Ra ( 184)  302 59.5   6e-09
XP_016857453 (OMIM: 179520) PREDICTED: ras-related ( 184)  302 59.5   6e-09
NP_002875 (OMIM: 179520) ras-related protein Rap-1 ( 184)  302 59.5   6e-09
XP_016857451 (OMIM: 179520) PREDICTED: ras-related ( 184)  302 59.5   6e-09
XP_016857452 (OMIM: 179520) PREDICTED: ras-related ( 184)  302 59.5   6e-09
XP_011518955 (OMIM: 109800,114480,137215,163200,19 ( 188)  300 59.2 7.6e-09
NP_004976 (OMIM: 109800,114480,137215,163200,19007 ( 188)  300 59.2 7.6e-09
XP_016875610 (OMIM: 612664) PREDICTED: ras-related ( 196)  300 59.2 7.9e-09


>>NP_004156 (OMIM: 179503) GTP-binding protein RAD [Homo  (308 aa)
 initn: 2048 init1: 2048 opt: 2048  Z-score: 1813.9  bits: 343.7 E(85289): 2.7e-94
Smith-Waterman score: 2048; 100.0% identity (100.0% similar) in 308 aa overlap (1-308:1-308)

               10        20        30        40        50        60
pF1KB6 MTLNGGGSGAGGSRGGGQERERRRGSTPWGPAPPLHRRSMPVDERDLQAALTPGALTAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MTLNGGGSGAGGSRGGGQERERRRGSTPWGPAPPLHRRSMPVDERDLQAALTPGALTAAA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 AGTGTQGPRLDWPEDSEDSLSSGGSDSDESVYKVLLLGAPGVGKSALARIFGGVEDGPEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 AGTGTQGPRLDWPEDSEDSLSSGGSDSDESVYKVLLLGAPGVGKSALARIFGGVEDGPEA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 EAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 EAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 SELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 SELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 QALFEGVVRQIRLRRDSKEANARRQAGTRRRESLGKKAKRFLGRIVARNSRKMAFRAKSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 QALFEGVVRQIRLRRDSKEANARRQAGTRRRESLGKKAKRFLGRIVARNSRKMAFRAKSK
              250       260       270       280       290       300

               
pF1KB6 SCHDLSVL
       ::::::::
NP_004 SCHDLSVL
               

>>NP_001122322 (OMIM: 179503) GTP-binding protein RAD [H  (308 aa)
 initn: 2048 init1: 2048 opt: 2048  Z-score: 1813.9  bits: 343.7 E(85289): 2.7e-94
Smith-Waterman score: 2048; 100.0% identity (100.0% similar) in 308 aa overlap (1-308:1-308)

               10        20        30        40        50        60
pF1KB6 MTLNGGGSGAGGSRGGGQERERRRGSTPWGPAPPLHRRSMPVDERDLQAALTPGALTAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTLNGGGSGAGGSRGGGQERERRRGSTPWGPAPPLHRRSMPVDERDLQAALTPGALTAAA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 AGTGTQGPRLDWPEDSEDSLSSGGSDSDESVYKVLLLGAPGVGKSALARIFGGVEDGPEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AGTGTQGPRLDWPEDSEDSLSSGGSDSDESVYKVLLLGAPGVGKSALARIFGGVEDGPEA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 EAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 SELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 QALFEGVVRQIRLRRDSKEANARRQAGTRRRESLGKKAKRFLGRIVARNSRKMAFRAKSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QALFEGVVRQIRLRRDSKEANARRQAGTRRRESLGKKAKRFLGRIVARNSRKMAFRAKSK
              250       260       270       280       290       300

               
pF1KB6 SCHDLSVL
       ::::::::
NP_001 SCHDLSVL
               

>>NP_859053 (OMIM: 600164) GTP-binding protein GEM [Homo  (296 aa)
 initn: 1007 init1: 814 opt: 1073  Z-score: 956.9  bits: 185.1 E(85289): 1.5e-46
Smith-Waterman score: 1073; 57.9% identity (79.8% similar) in 292 aa overlap (23-308:9-296)

               10        20        30        40        50        60
pF1KB6 MTLNGGGSGAGGSRGGGQERERRRGSTPWGPAPPLHRRSMPVDERDLQAALTPGALTAAA
                             :.:..  :  :  .: :.:.: : :..   :   .   
NP_859               MTLNNVTMRQGTV--GMQPQQQRWSIPADGRHLMVQKEPHQYSHRN
                             10          20        30        40    

                 70        80        90       100       110        
pF1KB6 AGTGTQGP--RLDWPEDSEDSLSSGGSDSDESVYKVLLLGAPGVGKSALARIFGGVEDGP
         ..:     : .:  :: ::. :  :.: .. :.:.:.:  :::::.:: ::.::.:. 
NP_859 RHSATPEDHCRRSWSSDSTDSVIS--SESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSM
           50        60          70        80        90       100  

      120          130       140       150        160       170    
pF1KB6 EA--EAAGH-TYDRSIVVDGEEASLMVYDIWEQDG-GRWLPGHCMAMGDAYVIVYSVTDK
       ..  :. :. ::.:...:::: :.... :.::. : ..::  ::: .::::.::::.::.
NP_859 DSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDR
            110       120       130       140       150       160  

          180       190       200       210       220       230    
pF1KB6 GSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSA
       .:::::::::.::::::::.:.::::::::::::: :::::.::::::::::::::::::
NP_859 ASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSA
            170       180       190       200       210       220  

          240       250       260       270       280       290    
pF1KB6 ALHHNVQALFEGVVRQIRLRRDSKEANARRQAGTRRRESLGKKAKRFLGRIVARNSRKMA
       :..:::. ::::.:::.:::::::: : :: :  .:.::. .::.:: :.:::.:...::
NP_859 AVQHNVKELFEGIVRQVRLRRDSKEKNERRLAYQKRKESMPRKARRFWGKIVAKNNKNMA
            230       240       250       260       270       280  

          300        
pF1KB6 FRAKSKSCHDLSVL
       :. :::::::::::
NP_859 FKLKSKSCHDLSVL
            290      

>>NP_005252 (OMIM: 600164) GTP-binding protein GEM [Homo  (296 aa)
 initn: 1007 init1: 814 opt: 1073  Z-score: 956.9  bits: 185.1 E(85289): 1.5e-46
Smith-Waterman score: 1073; 57.9% identity (79.8% similar) in 292 aa overlap (23-308:9-296)

               10        20        30        40        50        60
pF1KB6 MTLNGGGSGAGGSRGGGQERERRRGSTPWGPAPPLHRRSMPVDERDLQAALTPGALTAAA
                             :.:..  :  :  .: :.:.: : :..   :   .   
NP_005               MTLNNVTMRQGTV--GMQPQQQRWSIPADGRHLMVQKEPHQYSHRN
                             10          20        30        40    

                 70        80        90       100       110        
pF1KB6 AGTGTQGP--RLDWPEDSEDSLSSGGSDSDESVYKVLLLGAPGVGKSALARIFGGVEDGP
         ..:     : .:  :: ::. :  :.: .. :.:.:.:  :::::.:: ::.::.:. 
NP_005 RHSATPEDHCRRSWSSDSTDSVIS--SESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSM
           50        60          70        80        90       100  

      120          130       140       150        160       170    
pF1KB6 EA--EAAGH-TYDRSIVVDGEEASLMVYDIWEQDG-GRWLPGHCMAMGDAYVIVYSVTDK
       ..  :. :. ::.:...:::: :.... :.::. : ..::  ::: .::::.::::.::.
NP_005 DSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDR
            110       120       130       140       150       160  

          180       190       200       210       220       230    
pF1KB6 GSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSA
       .:::::::::.::::::::.:.::::::::::::: :::::.::::::::::::::::::
NP_005 ASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSA
            170       180       190       200       210       220  

          240       250       260       270       280       290    
pF1KB6 ALHHNVQALFEGVVRQIRLRRDSKEANARRQAGTRRRESLGKKAKRFLGRIVARNSRKMA
       :..:::. ::::.:::.:::::::: : :: :  .:.::. .::.:: :.:::.:...::
NP_005 AVQHNVKELFEGIVRQVRLRRDSKEKNERRLAYQKRKESMPRKARRFWGKIVAKNNKNMA
            230       240       250       260       270       280  

          300        
pF1KB6 FRAKSKSCHDLSVL
       :. :::::::::::
NP_005 FKLKSKSCHDLSVL
            290      

>>NP_054731 (OMIM: 610388) GTP-binding protein REM 1 [Ho  (298 aa)
 initn: 724 init1: 511 opt: 878  Z-score: 785.4  bits: 153.4 E(85289): 5.2e-37
Smith-Waterman score: 907; 51.4% identity (75.5% similar) in 294 aa overlap (34-308:12-298)

            10        20        30           40        50        60
pF1KB6 NGGGSGAGGSRGGGQERERRRGSTPWGPAPPLHRRS---MPVDERDLQAALTPGALTAAA
                                     :::::.   .:.. :  :    :: :... 
NP_054                    MTLNTEQEAKTPLHRRASTPLPLSPRGHQ----PGRLSTVP
                                  10        20            30       

               70                  80           90       100       
pF1KB6 AGTGTQGPRLDW----------PEDSEDSLSSGGSDSD---ESVYKVLLLGAPGVGKSAL
       . : .: :::            :  . :. :: .:::.   :..:.:.::: :::::..:
NP_054 S-TQSQHPRLGQSASLNPPTQKPSPAPDDWSSESSDSEGSWEALYRVVLLGDPGVGKTSL
         40        50        60        70        80        90      

       110       120        130       140         150       160    
pF1KB6 ARIFGGVEDGPEAEAAGH-TYDRSIVVDGEEASLMVYDIWEQD--GGRWLPGHCMAMGDA
       : .:.: ..    :  :. .:.:...::::...:.: : :: .     :    :.  :.:
NP_054 ASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA
        100       110       120       130       140       150      

          170       180       190       200       210       220    
pF1KB6 YVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVV
       ::::::..:.::::.:::::.::::..:.: :::::::::.::.: :::::.::::::::
NP_054 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVV
        160       170       180       190       200       210      

          230       240       250       260       270       280    
pF1KB6 FDCKFIETSAALHHNVQALFEGVVRQIRLRRDSKEANARRQAGTRRRESLGKKAKRFLGR
       ::::::::::.:.:::  ::::::::.::::  ... :..  . ::  ::...:.:::.:
NP_054 FDCKFIETSATLQHNVAELFEGVVRQLRLRR--RDSAAKEPPAPRRPASLAQRARRFLAR
        220       230       240         250       260       270    

          290       300        
pF1KB6 IVARNSRKMAFRAKSKSCHDLSVL
       ..::..:. :..:.:::::.:.::
NP_054 LTARSARRRALKARSKSCHNLAVL
          280       290        

>>NP_775798 (OMIM: 616955) GTP-binding protein REM 2 [Ho  (340 aa)
 initn: 798 init1: 440 opt: 814  Z-score: 728.4  bits: 143.0 E(85289): 7.8e-34
Smith-Waterman score: 822; 49.0% identity (68.6% similar) in 306 aa overlap (21-308:50-340)

                         10        20        30        40        50
pF1KB6           MTLNGGGSGAGGSRGGGQERERRRGSTPWGPAPPLHRRSMPVDERDLQAA
                                     :  :.. : .:. : .: ::::  .     
NP_775 PSGSRRASPPGTPTPEADATLLKKSEKLLAELDRSGLPSAPGAPRRRGSMPVPYKH----
      20        30        40        50        60        70         

               60        70             80          90       100   
pF1KB6 LTPGALTAAAAGTGTQGPRLDWPED-----SEDSLSSG--GSDSDESVYKVLLLGAPGVG
            :  : :       .:::: .     : :::.::  .  . ....::.:.:  :::
NP_775 ----QLRRAQAVD-----ELDWPPQASSSGSSDSLGSGEAAPAQKDGIFKVMLVGESGVG
              80             90       100       110       120      

           110         120       130       140        150       160
pF1KB6 KSALARIFGGVE--DGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQ-DGGRWLPGHCMA
       ::.::  :::..  .. : :    ::.: :.:: ::..:.::::::: :.: ::  ::. 
NP_775 KSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQ
        130       140       150       160       170       180      

              170       180       190       200       210       220
pF1KB6 MGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRA
        :::..::.::::. :: :. :  ..:: .:   :.:.:::::::::.::::::..::: 
NP_775 TGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRH
        190       200       210       220       230       240      

              230       240       250       260               270  
pF1KB6 CAVVFDCKFIETSAALHHNVQALFEGVVRQIRLRRDSKEANARRQ--------AGTRRRE
        : ...:: ::::::::::.. ::::.::::::::  ..:...:         :   :::
NP_775 LAGTLSCKHIETSAALHHNTRELFEGAVRQIRLRRGRNHAGGQRPDPGSPEGPAPPARRE
        250       260       270       280       290       300      

            280       290       300        
pF1KB6 SLGKKAKRFLGRIVARNSRKMAFRAKSKSCHDLSVL
       :: :::::::. .: ::..   :. .:.::::::::
NP_775 SLTKKAKRFLANLVPRNAK--FFKQRSRSCHDLSVL
        310       320         330       340

>>XP_016876548 (OMIM: 616955) PREDICTED: GTP-binding pro  (372 aa)
 initn: 798 init1: 440 opt: 814  Z-score: 728.0  bits: 143.1 E(85289): 8.3e-34
Smith-Waterman score: 822; 49.0% identity (68.6% similar) in 306 aa overlap (21-308:82-372)

                         10        20        30        40        50
pF1KB6           MTLNGGGSGAGGSRGGGQERERRRGSTPWGPAPPLHRRSMPVDERDLQAA
                                     :  :.. : .:. : .: ::::  .     
XP_016 IPLIASFSLPSHFILEADATLLKKSEKLLAELDRSGLPSAPGAPRRRGSMPVPYKH----
              60        70        80        90       100           

               60        70             80          90       100   
pF1KB6 LTPGALTAAAAGTGTQGPRLDWPED-----SEDSLSSG--GSDSDESVYKVLLLGAPGVG
            :  : :       .:::: .     : :::.::  .  . ....::.:.:  :::
XP_016 ----QLRRAQAVD-----ELDWPPQASSSGSSDSLGSGEAAPAQKDGIFKVMLVGESGVG
           110            120       130       140       150        

           110         120       130       140        150       160
pF1KB6 KSALARIFGGVE--DGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQ-DGGRWLPGHCMA
       ::.::  :::..  .. : :    ::.: :.:: ::..:.::::::: :.: ::  ::. 
XP_016 KSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQ
      160       170       180       190       200       210        

              170       180       190       200       210       220
pF1KB6 MGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRA
        :::..::.::::. :: :. :  ..:: .:   :.:.:::::::::.::::::..::: 
XP_016 TGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRH
      220       230       240       250       260       270        

              230       240       250       260               270  
pF1KB6 CAVVFDCKFIETSAALHHNVQALFEGVVRQIRLRRDSKEANARRQ--------AGTRRRE
        : ...:: ::::::::::.. ::::.::::::::  ..:...:         :   :::
XP_016 LAGTLSCKHIETSAALHHNTRELFEGAVRQIRLRRGRNHAGGQRPDPGSPEGPAPPARRE
      280       290       300       310       320       330        

            280       290       300        
pF1KB6 SLGKKAKRFLGRIVARNSRKMAFRAKSKSCHDLSVL
       :: :::::::. .: ::..   :. .:.::::::::
XP_016 SLTKKAKRFLANLVPRNAK--FFKQRSRSCHDLSVL
      340       350         360       370  

>>XP_005267440 (OMIM: 616955) PREDICTED: GTP-binding pro  (341 aa)
 initn: 807 init1: 440 opt: 810  Z-score: 724.9  bits: 142.4 E(85289): 1.2e-33
Smith-Waterman score: 818; 49.0% identity (67.9% similar) in 308 aa overlap (21-308:50-341)

                         10        20        30        40        50
pF1KB6           MTLNGGGSGAGGSRGGGQERERRRGSTPWGPAPPLHRRSMPVDERDLQAA
                                     :  :.. : .:. : .: ::::  .     
XP_005 PSGSRRASPPGTPTPEADATLLKKSEKLLAELDRSGLPSAPGAPRRRGSMPVPYKH----
      20        30        40        50        60        70         

               60        70             80          90       100   
pF1KB6 LTPGALTAAAAGTGTQGPRLDWPED-----SEDSLSSG--GSDSDESVYKVLLLGAPGVG
            :  : :       .:::: .     : :::.::  .  . ....::.:.:  :::
XP_005 ----QLRRAQAVD-----ELDWPPQASSSGSSDSLGSGEAAPAQKDGIFKVMLVGESGVG
              80             90       100       110       120      

           110           120       130       140        150        
pF1KB6 KSALARIFGGVEDG----PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQ-DGGRWLPGHC
       ::.::  :::..      ::  :   ::.: :.:: ::..:.::::::: :.: ::  ::
XP_005 KSTLAGTFGGLQGDSAHEPENPAED-TYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHC
        130       140       150        160       170       180     

      160       170       180       190       200       210        
pF1KB6 MAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEG
       .  :::..::.::::. :: :. :  ..:: .:   :.:.:::::::::.::::::..::
XP_005 LQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEG
         190       200       210       220       230       240     

      220       230       240       250       260               270
pF1KB6 RACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLRRDSKEANARRQ--------AGTRR
       :  : ...:: ::::::::::.. ::::.::::::::  ..:...:         :   :
XP_005 RHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLRRGRNHAGGQRPDPGSPEGPAPPAR
         250       260       270       280       290       300     

              280       290       300        
pF1KB6 RESLGKKAKRFLGRIVARNSRKMAFRAKSKSCHDLSVL
       :::: :::::::. .: ::..   :. .:.::::::::
XP_005 RESLTKKAKRFLANLVPRNAK--FFKQRSRSCHDLSVL
         310       320         330       340 

>>XP_016876547 (OMIM: 616955) PREDICTED: GTP-binding pro  (373 aa)
 initn: 807 init1: 440 opt: 810  Z-score: 724.4  bits: 142.4 E(85289): 1.3e-33
Smith-Waterman score: 818; 49.0% identity (67.9% similar) in 308 aa overlap (21-308:82-373)

                         10        20        30        40        50
pF1KB6           MTLNGGGSGAGGSRGGGQERERRRGSTPWGPAPPLHRRSMPVDERDLQAA
                                     :  :.. : .:. : .: ::::  .     
XP_016 IPLIASFSLPSHFILEADATLLKKSEKLLAELDRSGLPSAPGAPRRRGSMPVPYKH----
              60        70        80        90       100           

               60        70             80          90       100   
pF1KB6 LTPGALTAAAAGTGTQGPRLDWPED-----SEDSLSSG--GSDSDESVYKVLLLGAPGVG
            :  : :       .:::: .     : :::.::  .  . ....::.:.:  :::
XP_016 ----QLRRAQAVD-----ELDWPPQASSSGSSDSLGSGEAAPAQKDGIFKVMLVGESGVG
           110            120       130       140       150        

           110           120       130       140        150        
pF1KB6 KSALARIFGGVEDG----PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQ-DGGRWLPGHC
       ::.::  :::..      ::  :   ::.: :.:: ::..:.::::::: :.: ::  ::
XP_016 KSTLAGTFGGLQGDSAHEPENPAED-TYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHC
      160       170       180        190       200       210       

      160       170       180       190       200       210        
pF1KB6 MAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEG
       .  :::..::.::::. :: :. :  ..:: .:   :.:.:::::::::.::::::..::
XP_016 LQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEG
       220       230       240       250       260       270       

      220       230       240       250       260               270
pF1KB6 RACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLRRDSKEANARRQ--------AGTRR
       :  : ...:: ::::::::::.. ::::.::::::::  ..:...:         :   :
XP_016 RHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLRRGRNHAGGQRPDPGSPEGPAPPAR
       280       290       300       310       320       330       

              280       290       300        
pF1KB6 RESLGKKAKRFLGRIVARNSRKMAFRAKSKSCHDLSVL
       :::: :::::::. .: ::..   :. .:.::::::::
XP_016 RESLTKKAKRFLANLVPRNAK--FFKQRSRSCHDLSVL
       340       350         360       370   

>>XP_005260461 (OMIM: 610388) PREDICTED: GTP-binding pro  (306 aa)
 initn: 750 init1: 511 opt: 763  Z-score: 684.2  bits: 134.7 E(85289): 2.3e-31
Smith-Waterman score: 890; 50.0% identity (73.2% similar) in 302 aa overlap (34-308:12-306)

            10        20        30           40        50        60
pF1KB6 NGGGSGAGGSRGGGQERERRRGSTPWGPAPPLHRRS---MPVDERDLQAALTPGALTAAA
                                     :::::.   .:.. :  :    :: :... 
XP_005                    MTLNTEQEAKTPLHRRASTPLPLSPRGHQ----PGRLSTVP
                                  10        20            30       

               70                  80           90       100       
pF1KB6 AGTGTQGPRLDW----------PEDSEDSLSSGGSDSD---ESVYKVLLLGAPGVGKSAL
       . : .: :::            :  . :. :: .:::.   :..:.:.::: :::::..:
XP_005 S-TQSQHPRLGQSASLNPPTQKPSPAPDDWSSESSDSEGSWEALYRVVLLGDPGVGKTSL
         40        50        60        70        80        90      

       110       120                130       140         150      
pF1KB6 ARIFGGVEDGPEAEAAGH---------TYDRSIVVDGEEASLMVYDIWEQD--GGRWLPG
       : .:.: ..    :  :          .:.:...::::...:.: : :: .     :   
XP_005 ASLFAGKQERDLHEQLGDPALPSVAEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQE
        100       110       120       130       140       150      

        160       170       180       190       200       210      
pF1KB6 HCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVD
        :.  :.:::::::..:.::::.:::::.::::..:.: :::::::::.::.: :::::.
XP_005 SCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVE
        160       170       180       190       200       210      

        220       230       240       250       260       270      
pF1KB6 EGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLRRDSKEANARRQAGTRRRESLGK
       ::::::::::::::::::.:.:::  ::::::::.::::  ... :..  . ::  ::..
XP_005 EGRACAVVFDCKFIETSATLQHNVAELFEGVVRQLRLRR--RDSAAKEPPAPRRPASLAQ
        220       230       240       250         260       270    

        280       290       300        
pF1KB6 KAKRFLGRIVARNSRKMAFRAKSKSCHDLSVL
       .:.:::.:..::..:. :..:.:::::.:.::
XP_005 RARRFLARLTARSARRRALKARSKSCHNLAVL
          280       290       300      




308 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 20:52:22 2016 done: Fri Nov  4 20:52:23 2016
 Total Scan time:  7.780 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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