Result of FASTA (omim) for pF1KB6470
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6470, 354 aa
  1>>>pF1KB6470 354 - 354 aa - 354 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7994+/-0.000367; mu= 13.7014+/- 0.023
 mean_var=75.5326+/-15.468, 0's: 0 Z-trim(113.5): 80  B-trim: 1203 in 2/54
 Lambda= 0.147573
 statistics sampled from 22830 (22911) to 22830 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.627), E-opt: 0.2 (0.269), width:  16
 Scan time:  7.920

The best scores are:                                      opt bits E(85289)
NP_852136 (OMIM: 600404) replication factor C subu ( 354) 2320 503.4  3e-142
NP_001265720 (OMIM: 600404) replication factor C s ( 253) 1647 360.1 3.1e-99
XP_016867981 (OMIM: 600404) PREDICTED: replication ( 253) 1647 360.1 3.1e-99
NP_001265721 (OMIM: 600404) replication factor C s ( 251) 1594 348.8 7.6e-96
NP_001265722 (OMIM: 600404) replication factor C s ( 219) 1382 303.6 2.6e-82
NP_002905 (OMIM: 600404) replication factor C subu ( 320) 1383 303.9 3.1e-82
XP_006716143 (OMIM: 600404) PREDICTED: replication ( 217) 1369 300.9 1.8e-81
XP_016867982 (OMIM: 600404) PREDICTED: replication ( 217) 1369 300.9 1.8e-81
XP_011536945 (OMIM: 600407) PREDICTED: replication ( 340)  740 167.0 5.3e-41
XP_011536947 (OMIM: 600407) PREDICTED: replication ( 340)  740 167.0 5.3e-41
NP_031396 (OMIM: 600407) replication factor C subu ( 340)  740 167.0 5.3e-41
NP_001193730 (OMIM: 600407) replication factor C s ( 337)  735 166.0 1.1e-40
XP_016875268 (OMIM: 600407) PREDICTED: replication ( 304)  706 159.8 7.3e-39
NP_853556 (OMIM: 600407) replication factor C subu ( 319)  706 159.8 7.6e-39
NP_002907 (OMIM: 102577) replication factor C subu ( 363)  673 152.8 1.1e-36
NP_853551 (OMIM: 102577) replication factor C subu ( 363)  673 152.8 1.1e-36
NP_001123584 (OMIM: 600407) replication factor C s ( 255)  541 124.6 2.4e-28
XP_016876172 (OMIM: 600405) PREDICTED: replication ( 291)  229 58.2 2.6e-08
XP_016876171 (OMIM: 600405) PREDICTED: replication ( 293)  229 58.2 2.6e-08
XP_011533476 (OMIM: 600405) PREDICTED: replication ( 297)  229 58.2 2.7e-08
XP_016876170 (OMIM: 600405) PREDICTED: replication ( 297)  229 58.2 2.7e-08
XP_011533477 (OMIM: 600405) PREDICTED: replication ( 297)  229 58.2 2.7e-08
XP_011533475 (OMIM: 600405) PREDICTED: replication ( 298)  229 58.2 2.7e-08
NP_853536 (OMIM: 600405) replication factor C subu ( 305)  229 58.2 2.7e-08
XP_016876169 (OMIM: 600405) PREDICTED: replication ( 313)  229 58.2 2.8e-08
XP_011533474 (OMIM: 600405) PREDICTED: replication ( 343)  229 58.2   3e-08
NP_002906 (OMIM: 600405) replication factor C subu ( 356)  229 58.3 3.1e-08
XP_016866549 (OMIM: 608196) PREDICTED: ATPase WRNI ( 438)  192 50.4 8.8e-06
XP_005249289 (OMIM: 608196) PREDICTED: ATPase WRNI ( 419)  189 49.8 1.3e-05
NP_064520 (OMIM: 608196) ATPase WRNIP1 isoform 1 [ ( 665)  189 49.9   2e-05
XP_016864017 (OMIM: 102579) PREDICTED: replication (1121)  172 46.4 0.00037
XP_011512032 (OMIM: 102579) PREDICTED: replication (1122)  172 46.4 0.00038
NP_002904 (OMIM: 102579) replication factor C subu (1147)  172 46.4 0.00038
NP_001191676 (OMIM: 102579) replication factor C s (1148)  172 46.4 0.00038
NP_569079 (OMIM: 608196) ATPase WRNIP1 isoform 2 [ ( 640)  161 43.9  0.0012


>>NP_852136 (OMIM: 600404) replication factor C subunit   (354 aa)
 initn: 2320 init1: 2320 opt: 2320  Z-score: 2674.8  bits: 503.4 E(85289): 3e-142
Smith-Waterman score: 2320; 100.0% identity (100.0% similar) in 354 aa overlap (1-354:1-354)

               10        20        30        40        50        60
pF1KB6 MEVEAVCGGAGEVEAQDSDPAPAFSKAPGSAGHYELPWVEKYRPVKLNEIVGNEDTVSRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_852 MEVEAVCGGAGEVEAQDSDPAPAFSKAPGSAGHYELPWVEKYRPVKLNEIVGNEDTVSRL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 EVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAMLELNASNDRGIDVVRNKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_852 EVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAMLELNASNDRGIDVVRNKI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 KMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_852 KMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 IQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_852 IQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 SGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_852 SGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNIF
              250       260       270       280       290       300

              310       320       330       340       350    
pF1KB6 RVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQKTMAPVAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_852 RVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQKTMAPVAS
              310       320       330       340       350    

>>NP_001265720 (OMIM: 600404) replication factor C subun  (253 aa)
 initn: 1647 init1: 1647 opt: 1647  Z-score: 1902.6  bits: 360.1 E(85289): 3.1e-99
Smith-Waterman score: 1647; 100.0% identity (100.0% similar) in 253 aa overlap (102-354:1-253)

              80        90       100       110       120       130 
pF1KB6 IIIAGPPGTGKTTSILCLARALLGPALKDAMLELNASNDRGIDVVRNKIKMFAQQKVTLP
                                     ::::::::::::::::::::::::::::::
NP_001                               MLELNASNDRGIDVVRNKIKMFAQQKVTLP
                                             10        20        30

             140       150       160       170       180       190 
pF1KB6 KGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYT
               40        50        60        70        80        90

             200       210       220       230       240       250 
pF1KB6 KLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENV
              100       110       120       130       140       150

             260       270       280       290       300       310 
pF1KB6 FKVCDEPHPLLVKEMIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FKVCDEPHPLLVKEMIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEY
              160       170       180       190       200       210

             320       330       340       350    
pF1KB6 LKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQKTMAPVAS
       :::::::::::::::::::::::::::::::::::::::::::
NP_001 LKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQKTMAPVAS
              220       230       240       250   

>>XP_016867981 (OMIM: 600404) PREDICTED: replication fac  (253 aa)
 initn: 1647 init1: 1647 opt: 1647  Z-score: 1902.6  bits: 360.1 E(85289): 3.1e-99
Smith-Waterman score: 1647; 100.0% identity (100.0% similar) in 253 aa overlap (102-354:1-253)

              80        90       100       110       120       130 
pF1KB6 IIIAGPPGTGKTTSILCLARALLGPALKDAMLELNASNDRGIDVVRNKIKMFAQQKVTLP
                                     ::::::::::::::::::::::::::::::
XP_016                               MLELNASNDRGIDVVRNKIKMFAQQKVTLP
                                             10        20        30

             140       150       160       170       180       190 
pF1KB6 KGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYT
               40        50        60        70        80        90

             200       210       220       230       240       250 
pF1KB6 KLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENV
              100       110       120       130       140       150

             260       270       280       290       300       310 
pF1KB6 FKVCDEPHPLLVKEMIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FKVCDEPHPLLVKEMIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEY
              160       170       180       190       200       210

             320       330       340       350    
pF1KB6 LKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQKTMAPVAS
       :::::::::::::::::::::::::::::::::::::::::::
XP_016 LKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQKTMAPVAS
              220       230       240       250   

>>NP_001265721 (OMIM: 600404) replication factor C subun  (251 aa)
 initn: 1594 init1: 1594 opt: 1594  Z-score: 1841.7  bits: 348.8 E(85289): 7.6e-96
Smith-Waterman score: 1594; 99.2% identity (99.6% similar) in 247 aa overlap (108-354:5-251)

        80        90       100       110       120       130       
pF1KB6 PGTGKTTSILCLARALLGPALKDAMLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKI
                                     :. :::::::::::::::::::::::::::
NP_001                           MCPTSSLRGIDVVRNKIKMFAQQKVTLPKGRHKI
                                         10        20        30    

       140       150       160       170       180       190       
pF1KB6 IILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQ
           40        50        60        70        80        90    

       200       210       220       230       240       250       
pF1KB6 ILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDE
          100       110       120       130       140       150    

       260       270       280       290       300       310       
pF1KB6 PHPLLVKEMIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PHPLLVKEMIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFI
          160       170       180       190       200       210    

       320       330       340       350    
pF1KB6 KEIGYTHMKIAEGVNSLLQMAGLLARLCQKTMAPVAS
       :::::::::::::::::::::::::::::::::::::
NP_001 KEIGYTHMKIAEGVNSLLQMAGLLARLCQKTMAPVAS
          220       230       240       250 

>>NP_001265722 (OMIM: 600404) replication factor C subun  (219 aa)
 initn: 1382 init1: 1382 opt: 1382  Z-score: 1598.7  bits: 303.6 E(85289): 2.6e-82
Smith-Waterman score: 1382; 100.0% identity (100.0% similar) in 211 aa overlap (144-354:9-219)

           120       130       140       150       160       170   
pF1KB6 DVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNA
                                     ::::::::::::::::::::::::::::::
NP_001                       MLELNASNDSMTDGAQQALRRTMEIYSKTTRFALACNA
                                     10        20        30        

           180       190       200       210       220       230   
pF1KB6 SDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQAL
       40        50        60        70        80        90        

           240       250       260       270       280       290   
pF1KB6 NNLQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDEAYKILAHLWHLGYSPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NNLQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDEAYKILAHLWHLGYSPE
      100       110       120       130       140       150        

           300       310       320       330       340       350   
pF1KB6 DIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQKTMAPVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQKTMAPVA
      160       170       180       190       200       210        

        
pF1KB6 S
       :
NP_001 S
        

>>NP_002905 (OMIM: 600404) replication factor C subunit   (320 aa)
 initn: 1382 init1: 1382 opt: 1383  Z-score: 1597.3  bits: 303.9 E(85289): 3.1e-82
Smith-Waterman score: 2024; 90.4% identity (90.4% similar) in 354 aa overlap (1-354:1-320)

               10        20        30        40        50        60
pF1KB6 MEVEAVCGGAGEVEAQDSDPAPAFSKAPGSAGHYELPWVEKYRPVKLNEIVGNEDTVSRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MEVEAVCGGAGEVEAQDSDPAPAFSKAPGSAGHYELPWVEKYRPVKLNEIVGNEDTVSRL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 EVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAMLELNASNDRGIDVVRNKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::          
NP_002 EVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAMLELNASND----------
               70        80        90       100       110          

              130       140       150       160       170       180
pF1KB6 KMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEP
                               ::::::::::::::::::::::::::::::::::::
NP_002 ------------------------SMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEP
                                      120       130       140      

              190       200       210       220       230       240
pF1KB6 IQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 IQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTF
        150       160       170       180       190       200      

              250       260       270       280       290       300
pF1KB6 SGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 SGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNIF
        210       220       230       240       250       260      

              310       320       330       340       350    
pF1KB6 RVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQKTMAPVAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 RVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQKTMAPVAS
        270       280       290       300       310       320

>>XP_006716143 (OMIM: 600404) PREDICTED: replication fac  (217 aa)
 initn: 1369 init1: 1369 opt: 1369  Z-score: 1583.8  bits: 300.9 E(85289): 1.8e-81
Smith-Waterman score: 1369; 100.0% identity (100.0% similar) in 209 aa overlap (146-354:9-217)

         120       130       140       150       160       170     
pF1KB6 VRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASD
                                     ::::::::::::::::::::::::::::::
XP_006                       MCPTSSLRMTDGAQQALRRTMEIYSKTTRFALACNASD
                                     10        20        30        

         180       190       200       210       220       230     
pF1KB6 KIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNN
       40        50        60        70        80        90        

         240       250       260       270       280       290     
pF1KB6 LQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDEAYKILAHLWHLGYSPEDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDEAYKILAHLWHLGYSPEDI
      100       110       120       130       140       150        

         300       310       320       330       340       350    
pF1KB6 IGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQKTMAPVAS
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 IGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQKTMAPVAS
      160       170       180       190       200       210       

>>XP_016867982 (OMIM: 600404) PREDICTED: replication fac  (217 aa)
 initn: 1369 init1: 1369 opt: 1369  Z-score: 1583.8  bits: 300.9 E(85289): 1.8e-81
Smith-Waterman score: 1369; 100.0% identity (100.0% similar) in 209 aa overlap (146-354:9-217)

         120       130       140       150       160       170     
pF1KB6 VRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASD
                                     ::::::::::::::::::::::::::::::
XP_016                       MCPTSSLRMTDGAQQALRRTMEIYSKTTRFALACNASD
                                     10        20        30        

         180       190       200       210       220       230     
pF1KB6 KIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNN
       40        50        60        70        80        90        

         240       250       260       270       280       290     
pF1KB6 LQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDEAYKILAHLWHLGYSPEDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDEAYKILAHLWHLGYSPEDI
      100       110       120       130       140       150        

         300       310       320       330       340       350    
pF1KB6 IGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQKTMAPVAS
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQKTMAPVAS
      160       170       180       190       200       210       

>>XP_011536945 (OMIM: 600407) PREDICTED: replication fac  (340 aa)
 initn: 678 init1: 573 opt: 740  Z-score: 857.0  bits: 167.0 E(85289): 5.3e-41
Smith-Waterman score: 740; 37.2% identity (70.7% similar) in 317 aa overlap (28-342:12-327)

               10        20        30        40        50        60
pF1KB6 MEVEAVCGGAGEVEAQDSDPAPAFSKAPGSAGHYELPWVEKYRPVKLNEIVGNEDTVSRL
                                  :...   .:::::::::  ::......: .: .
XP_011                 METSALKQQEQPAATKIRNLPWVEKYRPQTLNDLISHQDILSTI
                               10        20        30        40    

               70        80        90       100        110         
pF1KB6 EVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAM-LELNASNDRGIDVVRNK
       . :  :  .:.... ::::::::..::  :. :       .: ::::::.:::::..:. 
XP_011 QKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIIRGP
           50        60        70        80        90       100    

     120       130       140       150       160       170         
pF1KB6 IKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIE
       :  ::. .. . ::  :..::::::.::. ::.::::..: ....::: : ::  .::: 
XP_011 ILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIP
          110        120       130       140       150       160   

     180       190       200       210       220       230         
pF1KB6 PIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQST
        .::::. .:.  ::   .. :: .:.:.:.:  ..::..:..  ..::::.::: ::::
XP_011 ALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQST
           170       180       190       200       210       220   

     240       250       260       270       280        290        
pF1KB6 FSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDEAYKILAHLWHL-GYSPEDIIGN
         .:: .. :.:.    .:    . ....  .: ..  ::. ...:  : : . .::. .
XP_011 NMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTTAYRNITELKTLKGLALHDILTE
           230       240       250       260       270       280   

      300       310       320       330       340       350     
pF1KB6 IFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQKTMAPVAS 
       :    .  ..   ...... ...  ..... :.:  .:...:.:             
XP_011 IHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQLSSLIAAFQVTRDLIVAEA
           290       300       310       320       330       340

>>XP_011536947 (OMIM: 600407) PREDICTED: replication fac  (340 aa)
 initn: 678 init1: 573 opt: 740  Z-score: 857.0  bits: 167.0 E(85289): 5.3e-41
Smith-Waterman score: 740; 37.2% identity (70.7% similar) in 317 aa overlap (28-342:12-327)

               10        20        30        40        50        60
pF1KB6 MEVEAVCGGAGEVEAQDSDPAPAFSKAPGSAGHYELPWVEKYRPVKLNEIVGNEDTVSRL
                                  :...   .:::::::::  ::......: .: .
XP_011                 METSALKQQEQPAATKIRNLPWVEKYRPQTLNDLISHQDILSTI
                               10        20        30        40    

               70        80        90       100        110         
pF1KB6 EVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAM-LELNASNDRGIDVVRNK
       . :  :  .:.... ::::::::..::  :. :       .: ::::::.:::::..:. 
XP_011 QKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIIRGP
           50        60        70        80        90       100    

     120       130       140       150       160       170         
pF1KB6 IKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIE
       :  ::. .. . ::  :..::::::.::. ::.::::..: ....::: : ::  .::: 
XP_011 ILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIP
          110        120       130       140       150       160   

     180       190       200       210       220       230         
pF1KB6 PIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQST
        .::::. .:.  ::   .. :: .:.:.:.:  ..::..:..  ..::::.::: ::::
XP_011 ALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQST
           170       180       190       200       210       220   

     240       250       260       270       280        290        
pF1KB6 FSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDEAYKILAHLWHL-GYSPEDIIGN
         .:: .. :.:.    .:    . ....  .: ..  ::. ...:  : : . .::. .
XP_011 NMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTTAYRNITELKTLKGLALHDILTE
           230       240       250       260       270       280   

      300       310       320       330       340       350     
pF1KB6 IFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQKTMAPVAS 
       :    .  ..   ...... ...  ..... :.:  .:...:.:             
XP_011 IHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQLSSLIAAFQVTRDLIVAEA
           290       300       310       320       330       340




354 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 20:57:13 2016 done: Fri Nov  4 20:57:15 2016
 Total Scan time:  7.920 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]
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