Result of FASTA (ccds) for pF1KB6470
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6470, 354 aa
  1>>>pF1KB6470 354 - 354 aa - 354 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0469+/-0.000869; mu= 12.2956+/- 0.052
 mean_var=74.1299+/-14.772, 0's: 0 Z-trim(106.5): 35  B-trim: 54 in 1/50
 Lambda= 0.148963
 statistics sampled from 9017 (9045) to 9017 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.643), E-opt: 0.2 (0.278), width:  16
 Scan time:  2.670

The best scores are:                                      opt bits E(32554)
CCDS5568.1 RFC2 gene_id:5982|Hs108|chr7            ( 354) 2320 507.9 5.1e-144
CCDS75618.1 RFC2 gene_id:5982|Hs108|chr7           ( 251) 1594 351.9 3.5e-97
CCDS5567.1 RFC2 gene_id:5982|Hs108|chr7            ( 320) 1383 306.5 1.9e-83
CCDS9185.1 RFC5 gene_id:5985|Hs108|chr12           ( 340)  740 168.4 8.1e-42
CCDS41843.2 RFC5 gene_id:5985|Hs108|chr12          ( 319)  706 161.1 1.2e-39
CCDS3283.1 RFC4 gene_id:5984|Hs108|chr3            ( 363)  673 154.0 1.9e-37


>>CCDS5568.1 RFC2 gene_id:5982|Hs108|chr7                 (354 aa)
 initn: 2320 init1: 2320 opt: 2320  Z-score: 2699.1  bits: 507.9 E(32554): 5.1e-144
Smith-Waterman score: 2320; 100.0% identity (100.0% similar) in 354 aa overlap (1-354:1-354)

               10        20        30        40        50        60
pF1KB6 MEVEAVCGGAGEVEAQDSDPAPAFSKAPGSAGHYELPWVEKYRPVKLNEIVGNEDTVSRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MEVEAVCGGAGEVEAQDSDPAPAFSKAPGSAGHYELPWVEKYRPVKLNEIVGNEDTVSRL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 EVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAMLELNASNDRGIDVVRNKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 EVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAMLELNASNDRGIDVVRNKI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 KMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 KMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 IQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 IQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 SGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 SGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNIF
              250       260       270       280       290       300

              310       320       330       340       350    
pF1KB6 RVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQKTMAPVAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQKTMAPVAS
              310       320       330       340       350    

>>CCDS75618.1 RFC2 gene_id:5982|Hs108|chr7                (251 aa)
 initn: 1594 init1: 1594 opt: 1594  Z-score: 1858.3  bits: 351.9 E(32554): 3.5e-97
Smith-Waterman score: 1594; 99.2% identity (99.6% similar) in 247 aa overlap (108-354:5-251)

        80        90       100       110       120       130       
pF1KB6 PGTGKTTSILCLARALLGPALKDAMLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKI
                                     :. :::::::::::::::::::::::::::
CCDS75                           MCPTSSLRGIDVVRNKIKMFAQQKVTLPKGRHKI
                                         10        20        30    

       140       150       160       170       180       190       
pF1KB6 IILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 IILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQ
           40        50        60        70        80        90    

       200       210       220       230       240       250       
pF1KB6 ILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 ILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDE
          100       110       120       130       140       150    

       260       270       280       290       300       310       
pF1KB6 PHPLLVKEMIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 PHPLLVKEMIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFI
          160       170       180       190       200       210    

       320       330       340       350    
pF1KB6 KEIGYTHMKIAEGVNSLLQMAGLLARLCQKTMAPVAS
       :::::::::::::::::::::::::::::::::::::
CCDS75 KEIGYTHMKIAEGVNSLLQMAGLLARLCQKTMAPVAS
          220       230       240       250 

>>CCDS5567.1 RFC2 gene_id:5982|Hs108|chr7                 (320 aa)
 initn: 1382 init1: 1382 opt: 1383  Z-score: 1611.5  bits: 306.5 E(32554): 1.9e-83
Smith-Waterman score: 2024; 90.4% identity (90.4% similar) in 354 aa overlap (1-354:1-320)

               10        20        30        40        50        60
pF1KB6 MEVEAVCGGAGEVEAQDSDPAPAFSKAPGSAGHYELPWVEKYRPVKLNEIVGNEDTVSRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MEVEAVCGGAGEVEAQDSDPAPAFSKAPGSAGHYELPWVEKYRPVKLNEIVGNEDTVSRL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 EVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAMLELNASNDRGIDVVRNKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::          
CCDS55 EVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAMLELNASND----------
               70        80        90       100       110          

              130       140       150       160       170       180
pF1KB6 KMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEP
                               ::::::::::::::::::::::::::::::::::::
CCDS55 ------------------------SMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEP
                                      120       130       140      

              190       200       210       220       230       240
pF1KB6 IQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 IQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTF
        150       160       170       180       190       200      

              250       260       270       280       290       300
pF1KB6 SGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 SGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNIF
        210       220       230       240       250       260      

              310       320       330       340       350    
pF1KB6 RVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQKTMAPVAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQKTMAPVAS
        270       280       290       300       310       320

>>CCDS9185.1 RFC5 gene_id:5985|Hs108|chr12                (340 aa)
 initn: 678 init1: 573 opt: 740  Z-score: 864.2  bits: 168.4 E(32554): 8.1e-42
Smith-Waterman score: 740; 37.2% identity (70.7% similar) in 317 aa overlap (28-342:12-327)

               10        20        30        40        50        60
pF1KB6 MEVEAVCGGAGEVEAQDSDPAPAFSKAPGSAGHYELPWVEKYRPVKLNEIVGNEDTVSRL
                                  :...   .:::::::::  ::......: .: .
CCDS91                 METSALKQQEQPAATKIRNLPWVEKYRPQTLNDLISHQDILSTI
                               10        20        30        40    

               70        80        90       100        110         
pF1KB6 EVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAM-LELNASNDRGIDVVRNK
       . :  :  .:.... ::::::::..::  :. :       .: ::::::.:::::..:. 
CCDS91 QKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIIRGP
           50        60        70        80        90       100    

     120       130       140       150       160       170         
pF1KB6 IKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIE
       :  ::. .. . ::  :..::::::.::. ::.::::..: ....::: : ::  .::: 
CCDS91 ILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIP
          110        120       130       140       150       160   

     180       190       200       210       220       230         
pF1KB6 PIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQST
        .::::. .:.  ::   .. :: .:.:.:.:  ..::..:..  ..::::.::: ::::
CCDS91 ALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQST
           170       180       190       200       210       220   

     240       250       260       270       280        290        
pF1KB6 FSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDEAYKILAHLWHL-GYSPEDIIGN
         .:: .. :.:.    .:    . ....  .: ..  ::. ...:  : : . .::. .
CCDS91 NMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTTAYRNITELKTLKGLALHDILTE
           230       240       250       260       270       280   

      300       310       320       330       340       350     
pF1KB6 IFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQKTMAPVAS 
       :    .  ..   ...... ...  ..... :.:  .:...:.:             
CCDS91 IHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQLSSLIAAFQVTRDLIVAEA
           290       300       310       320       330       340

>>CCDS41843.2 RFC5 gene_id:5985|Hs108|chr12               (319 aa)
 initn: 648 init1: 543 opt: 706  Z-score: 825.2  bits: 161.1 E(32554): 1.2e-39
Smith-Waterman score: 706; 37.3% identity (70.6% similar) in 306 aa overlap (39-342:2-306)

       10        20        30        40        50        60        
pF1KB6 GAGEVEAQDSDPAPAFSKAPGSAGHYELPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGN
                                     ::::::  ::......: .: .. :  :  
CCDS41                              MVEKYRPQTLNDLISHQDILSTIQKFINEDR
                                            10        20        30 

       70        80        90       100        110       120       
pF1KB6 VPNIIIAGPPGTGKTTSILCLARALLGPALKDAM-LELNASNDRGIDVVRNKIKMFAQQK
       .:.... ::::::::..::  :. :       .: ::::::.:::::..:. :  ::. .
CCDS41 LPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTR
              40        50        60        70        80        90 

       130       140       150       160       170       180       
pF1KB6 VTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAV
       . . ::  :..::::::.::. ::.::::..: ....::: : ::  .:::  .::::. 
CCDS41 TIFKKG-FKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTR
              100       110       120       130       140       150

       190       200       210       220       230       240       
pF1KB6 LRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGFIN
       .:.  ::   .. :: .:.:.:.:  ..::..:..  ..::::.::: ::::  .:: ..
CCDS41 FRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVT
              160       170       180       190       200       210

       250       260       270       280        290       300      
pF1KB6 SENVFKVCDEPHPLLVKEMIQHCVNANIDEAYKILAHLWHL-GYSPEDIIGNIFRVCKTF
        :.:.    .:    . ....  .: ..  ::. ...:  : : . .::. .:    .  
CCDS41 EETVYTCTGHPLKSDIANILDWMLNQDFTTAYRNITELKTLKGLALHDILTEIHLFVHRV
              220       230       240       250       260       270

        310       320       330       340       350     
pF1KB6 QMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQKTMAPVAS 
       ..   ...... ...  ..... :.:  .:...:.:             
CCDS41 DFPSSVRIHLLTKMADIEYRLSVGTNEKIQLSSLIAAFQVTRDLIVAEA
              280       290       300       310         

>>CCDS3283.1 RFC4 gene_id:5984|Hs108|chr3                 (363 aa)
 initn: 639 init1: 347 opt: 673  Z-score: 786.0  bits: 154.0 E(32554): 1.9e-37
Smith-Waterman score: 676; 37.1% identity (67.1% similar) in 334 aa overlap (29-347:27-358)

               10        20        30            40        50      
pF1KB6 MEVEAVCGGAGEVEAQDSDPAPAFSKAPGSAGHYE----LPWVEKYRPVKLNEIVGNEDT
                                   ::.:. .    .::::::::  ..:.. .:..
CCDS32   MQAFLKGTSISTKPPLTKDRGVAASAGSSGENKKAKPVPWVEKYRPKCVDEVAFQEEV
                 10        20        30        40        50        

         60        70        80        90        100       110     
pF1KB6 VSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPAL-KDAMLELNASNDRGIDV
       :. :.   . ...::... ::::::::..::  :: :.:: : .  .::::::..:::.:
CCDS32 VAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQV
       60        70        80        90       100       110        

         120       130             140       150       160         
pF1KB6 VRNKIKMFAQQKVTLPK--GR----HKIIILDEADSMTDGAQQALRRTMEIYSKTTRFAL
       ::.:.: :::  :.  .  :.     ::.:::::::::..:: :::::::  :::::: :
CCDS32 VREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCL
      120       130       140       150       160       170        

     170       180       190       200       210       220         
pF1KB6 ACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDM
        ::  ..::::. :::. .:.  :.:     ::... .:: :  .:.:.  .. ...::.
CCDS32 ICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDL
      180       190       200       210       220       230        

     230       240       250       260           270       280     
pF1KB6 RQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQH----CVNANIDEAYKILAHL
       :.:.. :::.    :  ..: . ::  .   ..  : :.     : ....:.   ..  :
CCDS32 RKAITFLQSATRLTG--GKEITEKVITDIAGVIPAEKIDGVFAACQSGSFDKLEAVVKDL
      240       250         260       270       280       290      

         290       300       310       320       330       340     
pF1KB6 WHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLC
          :..  ......  :    ....  :  . .... .   .:.:..  ::. .: : . 
CCDS32 IDEGHAATQLVNQLHDVVVENNLSDKQKSIITEKLAEVDKCLADGADEHLQLISLCATVM
        300       310       320       330       340       350      

         350    
pF1KB6 QKTMAPVAS
       :.       
CCDS32 QQLSQNC  
        360     




354 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 20:57:13 2016 done: Fri Nov  4 20:57:13 2016
 Total Scan time:  2.670 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com