Result of FASTA (ccds) for pF1KE0117
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0117, 213 aa
  1>>>pF1KE0117 213 - 213 aa - 213 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4267+/-0.00111; mu= 12.6968+/- 0.067
 mean_var=76.3448+/-15.410, 0's: 0 Z-trim(103.7): 213  B-trim: 210 in 1/47
 Lambda= 0.146786
 statistics sampled from 7313 (7557) to 7313 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.61), E-opt: 0.2 (0.232), width:  16
 Scan time:  1.890

The best scores are:                                      opt bits E(32554)
CCDS14766.1 RAB39B gene_id:116442|Hs108|chrX       ( 213) 1410 308.2 2.6e-84
CCDS8338.1 RAB39A gene_id:54734|Hs108|chr11        ( 217) 1144 251.8 2.3e-67
CCDS9570.1 RAB2B gene_id:84932|Hs108|chr14         ( 216)  601 136.8 9.6e-33
CCDS6175.1 RAB2A gene_id:5862|Hs108|chr8           ( 212)  599 136.4 1.3e-32
CCDS10183.1 RAB8B gene_id:51762|Hs108|chr15        ( 207)  586 133.6 8.4e-32
CCDS12339.1 RAB8A gene_id:4218|Hs108|chr19         ( 207)  584 133.2 1.1e-31
CCDS1058.1 RAB13 gene_id:5872|Hs108|chr1           ( 203)  567 129.6 1.3e-30
CCDS6827.1 RAB14 gene_id:51552|Hs108|chr9          ( 215)  550 126.0 1.7e-29
CCDS33030.1 RAB4B gene_id:53916|Hs108|chr19        ( 213)  537 123.3 1.1e-28
CCDS1720.1 RAB10 gene_id:10890|Hs108|chr2          ( 200)  529 121.6 3.5e-28
CCDS10212.1 RAB11A gene_id:8766|Hs108|chr15        ( 216)  524 120.5 7.8e-28
CCDS31050.1 RAB4A gene_id:5867|Hs108|chr1          ( 218)  521 119.9 1.2e-27
CCDS12201.1 RAB11B gene_id:9230|Hs108|chr19        ( 218)  521 119.9 1.2e-27
CCDS8264.1 RAB30 gene_id:27314|Hs108|chr11         ( 203)  517 119.0 2.1e-27
CCDS33850.1 RAB43 gene_id:339122|Hs108|chr3        ( 212)  511 117.8 5.2e-27
CCDS10460.1 RAB26 gene_id:25837|Hs108|chr16        ( 256)  510 117.6   7e-27
CCDS46306.1 RAB1A gene_id:5861|Hs108|chr2          ( 205)  507 116.9 9.1e-27
CCDS76806.1 RAB26 gene_id:25837|Hs108|chr16        ( 190)  498 115.0 3.2e-26
CCDS31613.1 RAB1B gene_id:81876|Hs108|chr11        ( 201)  492 113.7 8.1e-26
CCDS76691.1 RAB15 gene_id:376267|Hs108|chr14       ( 212)  488 112.9 1.5e-25
CCDS12372.1 RAB3A gene_id:5864|Hs108|chr19         ( 220)  487 112.7 1.8e-25
CCDS11703.1 RAB37 gene_id:326624|Hs108|chr17       ( 216)  485 112.3 2.4e-25
CCDS82198.1 RAB37 gene_id:326624|Hs108|chr17       ( 196)  484 112.0 2.6e-25
CCDS32722.1 RAB37 gene_id:326624|Hs108|chr17       ( 223)  484 112.1 2.8e-25
CCDS54161.1 RAB37 gene_id:326624|Hs108|chr17       ( 228)  484 112.1 2.9e-25
CCDS34762.2 RAB19 gene_id:401409|Hs108|chr7        ( 217)  481 111.4 4.3e-25
CCDS3747.1 RAB33B gene_id:83452|Hs108|chr4         ( 229)  481 111.4 4.5e-25
CCDS14621.1 RAB33A gene_id:9363|Hs108|chrX         ( 237)  473 109.8 1.5e-24
CCDS56537.1 RAB2A gene_id:5862|Hs108|chr8          ( 188)  469 108.8 2.2e-24
CCDS3976.1 RAB3C gene_id:115827|Hs108|chr5         ( 227)  470 109.1 2.2e-24
CCDS42410.1 RAB12 gene_id:201475|Hs108|chr18       ( 244)  464 107.9 5.7e-24
CCDS41413.1 RAB25 gene_id:57111|Hs108|chr1         ( 213)  461 107.2   8e-24
CCDS12257.1 RAB3D gene_id:9545|Hs108|chr19         ( 219)  460 107.0 9.5e-24
CCDS41846.1 RAB35 gene_id:11021|Hs108|chr12        ( 201)  457 106.3 1.4e-23
CCDS560.1 RAB3B gene_id:5865|Hs108|chr1            ( 219)  453 105.5 2.7e-23
CCDS3082.1 RAB6B gene_id:51560|Hs108|chr3          ( 208)  430 100.6 7.4e-22
CCDS58373.1 RAB11A gene_id:8766|Hs108|chr15        ( 155)  426 99.7 1.1e-21
CCDS8223.1 RAB6A gene_id:5870|Hs108|chr11          ( 208)  427 100.0 1.2e-21
CCDS9003.1 RAB21 gene_id:23011|Hs108|chr12         ( 225)  425 99.6 1.7e-21
CCDS45826.1 RAB31 gene_id:11031|Hs108|chr18        ( 195)  423 99.1   2e-21
CCDS8224.1 RAB6A gene_id:5870|Hs108|chr11          ( 208)  422 98.9 2.4e-21
CCDS33497.1 RAB22A gene_id:57403|Hs108|chr20       ( 194)  416 97.6 5.5e-21
CCDS7155.1 RAB18 gene_id:22931|Hs108|chr10         ( 206)  415 97.4 6.7e-21
CCDS11419.1 RAB5C gene_id:5878|Hs108|chr17         ( 216)  410 96.4 1.4e-20
CCDS58551.1 RAB5C gene_id:5878|Hs108|chr17         ( 249)  410 96.4 1.6e-20
CCDS2633.1 RAB5A gene_id:5868|Hs108|chr3           ( 215)  409 96.2 1.7e-20
CCDS8900.1 RAB5B gene_id:5869|Hs108|chr12          ( 215)  408 96.0 1.9e-20
CCDS14156.1 RAB9A gene_id:9367|Hs108|chrX          ( 201)  407 95.7 2.1e-20
CCDS6662.1 RASEF gene_id:158158|Hs108|chr9         ( 740)  411 97.0 3.3e-20
CCDS10153.1 RAB27A gene_id:5873|Hs108|chr15        ( 221)  403 94.9 4.1e-20


>>CCDS14766.1 RAB39B gene_id:116442|Hs108|chrX            (213 aa)
 initn: 1410 init1: 1410 opt: 1410  Z-score: 1627.3  bits: 308.2 E(32554): 2.6e-84
Smith-Waterman score: 1410; 100.0% identity (100.0% similar) in 213 aa overlap (1-213:1-213)

               10        20        30        40        50        60
pF1KE0 MEAIWLYQFRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEPGKRIKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MEAIWLYQFRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEPGKRIKL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 QIWDTAGQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEWLEETKVHVQPYQIVFVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 QIWDTAGQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEWLEETKVHVQPYQIVFVL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 VGHKCDLDTQRQVTRHEAEKLAAAYGMKYIETSARDAINVEKAFTDLTRDIYELVKRGEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 VGHKCDLDTQRQVTRHEAEKLAAAYGMKYIETSARDAINVEKAFTDLTRDIYELVKRGEI
              130       140       150       160       170       180

              190       200       210   
pF1KE0 TIQEGWEGVKSGFVPNVVHSSEEVVKSERRCLC
       :::::::::::::::::::::::::::::::::
CCDS14 TIQEGWEGVKSGFVPNVVHSSEEVVKSERRCLC
              190       200       210   

>>CCDS8338.1 RAB39A gene_id:54734|Hs108|chr11             (217 aa)
 initn: 1156 init1: 963 opt: 1144  Z-score: 1322.7  bits: 251.8 E(32554): 2.3e-67
Smith-Waterman score: 1144; 77.0% identity (94.0% similar) in 217 aa overlap (1-213:1-217)

               10        20        30            40        50      
pF1KE0 MEAIWLYQFRLIVIGDSTVGKSCLIRRFTEGRF----AQVSDPTVGVDFFSRLVEIEPGK
       ::.::.::::::::::::::::::..:::.:::    . . ::::::::::::.::::::
CCDS83 METIWIYQFRLIVIGDSTVGKSCLLHRFTQGRFPGLRSPACDPTVGVDFFSRLLEIEPGK
               10        20        30        40        50        60

         60        70        80        90       100       110      
pF1KE0 RIKLQIWDTAGQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEWLEETKVHVQPYQI
       :::::.::::::::::::::.::::::::.:.:::::::::..:..::::.:..:::..:
CCDS83 RIKLQLWDTAGQERFRSITRSYYRNSVGGFLVFDITNRRSFEHVKDWLEEAKMYVQPFRI
               70        80        90       100       110       120

        120       130       140       150       160       170      
pF1KE0 VFVLVGHKCDLDTQRQVTRHEAEKLAAAYGMKYIETSARDAINVEKAFTDLTRDIYELVK
       ::.:::::::: .::::::.:::::.:  :::::::::.:: :::..:: ::::::::.:
CCDS83 VFLLVGHKCDLASQRQVTREEAEKLSADCGMKYIETSAKDATNVEESFTILTRDIYELIK
              130       140       150       160       170       180

        180       190       200       210   
pF1KE0 RGEITIQEGWEGVKSGFVPNVVHSSEEVVKSERRCLC
       .::: ::.::::::::::::.::::::.:: ...:.:
CCDS83 KGEICIQDGWEGVKSGFVPNTVHSSEEAVKPRKECFC
              190       200       210       

>>CCDS9570.1 RAB2B gene_id:84932|Hs108|chr14              (216 aa)
 initn: 583 init1: 252 opt: 601  Z-score: 701.3  bits: 136.8 E(32554): 9.6e-33
Smith-Waterman score: 601; 47.8% identity (81.2% similar) in 186 aa overlap (7-192:5-188)

               10        20        30        40        50        60
pF1KE0 MEAIWLYQFRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEPGKRIKL
             : :. :.:::. ::::::. .::. ::  : : :.::.: .:.:.:. ::.:::
CCDS95   MTYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNID-GKQIKL
                 10        20        30        40        50        

               70        80        90       100       110       120
pF1KE0 QIWDTAGQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEWLEETKVHVQPYQIVFVL
       ::::::::: ::::::.:::...:.::..::: :..:...  :::... : .  ..:..:
CCDS95 QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSS-NMVIML
        60        70        80        90       100       110       

              130       140       150       160       170       180
pF1KE0 VGHKCDLDTQRQVTRHEAEKLAAAYGMKYIETSARDAINVEKAFTDLTRDIYELVKRGEI
       .:.: ::...:.: :.:.: .:  .:. ..::::. : :::.:: . ...::. ...: .
CCDS95 IGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQGLF
        120       130       140       150       160       170      

              190       200       210          
pF1KE0 TIQEGWEGVKSGFVPNVVHSSEEVVKSERRCLC       
        ...  .:.: :                            
CCDS95 DVHNEANGIKIGPQQSISTSVGPSASQRNSRDIGSNSGCC
        180       190       200       210      

>>CCDS6175.1 RAB2A gene_id:5862|Hs108|chr8                (212 aa)
 initn: 581 init1: 250 opt: 599  Z-score: 699.1  bits: 136.4 E(32554): 1.3e-32
Smith-Waterman score: 599; 47.8% identity (80.1% similar) in 186 aa overlap (7-192:5-188)

               10        20        30        40        50        60
pF1KE0 MEAIWLYQFRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEPGKRIKL
             : :. :.:::. ::::::. .::. ::  : : :.::.: .:.. :. ::.:::
CCDS61   MAYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID-GKQIKL
                 10        20        30        40        50        

               70        80        90       100       110       120
pF1KE0 QIWDTAGQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEWLEETKVHVQPYQIVFVL
       ::::::::: ::::::.:::...:.::..::: : .:...  :::... : .  ..:..:
CCDS61 QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNS-NMVIML
        60        70        80        90       100       110       

              130       140       150       160       170       180
pF1KE0 VGHKCDLDTQRQVTRHEAEKLAAAYGMKYIETSARDAINVEKAFTDLTRDIYELVKRGEI
       .:.: ::...:.: ..:.: .:  .:. ..::::. : :::.:: . ...::: ...: .
CCDS61 IGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVF
        120       130       140       150       160       170      

              190       200       210      
pF1KE0 TIQEGWEGVKSGFVPNVVHSSEEVVKSERRCLC   
        :..  .:.: :                        
CCDS61 DINNEANGIKIGPQHAATNATHAGNQGGQQAGGGCC
        180       190       200       210  

>>CCDS10183.1 RAB8B gene_id:51762|Hs108|chr15             (207 aa)
 initn: 429 init1: 255 opt: 586  Z-score: 684.4  bits: 133.6 E(32554): 8.4e-32
Smith-Waterman score: 586; 48.0% identity (80.8% similar) in 177 aa overlap (1-177:1-175)

               10        20        30        40        50        60
pF1KE0 MEAIWLYQFRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEPGKRIKL
       :   . : :.:..:::: :::.::. ::.:  :  .   :.:.::  : .:.. ::.:::
CCDS10 MAKTYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELD-GKKIKL
               10        20        30        40        50          

               70        80        90       100       110       120
pF1KE0 QIWDTAGQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEWLEETKVHVQPYQIVFVL
       ::::::::::::.:: ::::...: .:..::::..::.:...:... . :..  ..  ..
CCDS10 QIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASS-DVERMI
      60        70        80        90       100       110         

              130       140       150       160       170       180
pF1KE0 VGHKCDLDTQRQVTRHEAEKLAAAYGMKYIETSARDAINVEKAFTDLTRDIYELVKRGEI
       .:.:::.. .:::.....::::  ::.:..::::... :::.::  :.:::.  ..:   
CCDS10 LGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLARDIMTKLNRKMN
      120       130       140       150       160       170        

              190       200       210   
pF1KE0 TIQEGWEGVKSGFVPNVVHSSEEVVKSERRCLC
                                        
CCDS10 DSNSAGAGGPVKITENRSKKTSFFRCSLL    
      180       190       200           

>>CCDS12339.1 RAB8A gene_id:4218|Hs108|chr19              (207 aa)
 initn: 565 init1: 259 opt: 584  Z-score: 682.1  bits: 133.2 E(32554): 1.1e-31
Smith-Waterman score: 584; 47.4% identity (78.6% similar) in 192 aa overlap (1-190:1-190)

               10        20        30        40        50        60
pF1KE0 MEAIWLYQFRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEPGKRIKL
       :   . : :.:..:::: :::.:.. ::.:  : ..   :.:.::  : .:.. ::::::
CCDS12 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELD-GKRIKL
               10        20        30        40        50          

               70        80        90       100       110       120
pF1KE0 QIWDTAGQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEWLEETKVHVQPYQIVFVL
       ::::::::::::.:: ::::...: .:..::::..::.:...:... . :..  ..  ..
CCDS12 QIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASA-DVEKMI
      60        70        80        90       100       110         

              130       140       150       160       170          
pF1KE0 VGHKCDLDTQRQVTRHEAEKLAAAYGMKYIETSARDAINVEKAFTDLTRDIY-ELVKRGE
       .:.:::.. .:::.....::::  ::.:..::::.  ::::.::  :.:::  .. :. :
CCDS12 LGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLE
      120       130       140       150       160       170        

     180        190       200       210   
pF1KE0 ITIQEGW-EGVKSGFVPNVVHSSEEVVKSERRCLC
        .  .:  .:::                       
CCDS12 GNSPQGSNQGVKITPDQQKRSSFFRCVLL      
      180       190       200             

>>CCDS1058.1 RAB13 gene_id:5872|Hs108|chr1                (203 aa)
 initn: 546 init1: 246 opt: 567  Z-score: 662.8  bits: 129.6 E(32554): 1.3e-30
Smith-Waterman score: 567; 46.6% identity (81.5% similar) in 178 aa overlap (1-178:1-174)

               10        20        30        40        50        60
pF1KE0 MEAIWLYQFRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEPGKRIKL
       :   . . :.:..:::: :::.::: ::.:  : ..   :.:.::  : :.:: ::.:::
CCDS10 MAKAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIE-GKKIKL
               10        20        30        40        50          

               70        80        90       100       110       120
pF1KE0 QIWDTAGQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEWLEETKVHVQPYQIVFVL
       :.:::::::::..:: ::::...: .:..:::...::.:...:..  : ...   .  .:
CCDS10 QVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASA-GVERLL
      60        70        80        90       100       110         

              130       140       150       160       170       180
pF1KE0 VGHKCDLDTQRQVTRHEAEKLAAAYGMKYIETSARDAINVEKAFTDLTRDIYELVKRGEI
       .:.:::....:.: ...:.:::  .:....::::....::..::..:.:::  :.: :  
CCDS10 LGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDI--LLKSGGR
      120       130       140       150       160         170      

              190       200       210   
pF1KE0 TIQEGWEGVKSGFVPNVVHSSEEVVKSERRCLC
                                        
CCDS10 RSGNGNKPPSTDLKTCDKKNTNKCSLG      
        180       190       200         

>>CCDS6827.1 RAB14 gene_id:51552|Hs108|chr9               (215 aa)
 initn: 530 init1: 220 opt: 550  Z-score: 643.0  bits: 126.0 E(32554): 1.7e-29
Smith-Waterman score: 550; 39.4% identity (73.6% similar) in 208 aa overlap (7-213:10-215)

                  10        20        30        40        50       
pF1KE0    MEAIWLYQFRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEPGKR
                : :. :.:::  ::::::...::: .:      :.::.: .:..:.  :..
CCDS68 MATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVS-GQK
               10        20        30        40        50          

        60        70        80        90       100       110       
pF1KE0 IKLQIWDTAGQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEWLEETKVHVQPYQIV
       :::::::::::::::..::.:::...:.:...::: : .....  :: ...  ..:  ..
CCDS68 IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVI
      60        70        80        90       100       110         

       120       130       140       150       160       170       
pF1KE0 FVLVGHKCDLDTQRQVTRHEAEKLAAAYGMKYIETSARDAINVEKAFTDLTRDIYELVKR
        .:.:.: ::..::.:: .::...:   :. ..:.::. . ::: :: . .. ::. .. 
CCDS68 -ILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQD
      120       130       140       150       160       170        

       180       190        200       210   
pF1KE0 GEITIQEGWEGVK-SGFVPNVVHSSEEVVKSERRCLC
       : . .. .  ::. .  .:.  . . :   ... : :
CCDS68 GSLDLNAAESGVQHKPSAPQGGRLTSEPQPQREGCGC
      180       190       200       210     

>>CCDS33030.1 RAB4B gene_id:53916|Hs108|chr19             (213 aa)
 initn: 506 init1: 247 opt: 537  Z-score: 628.1  bits: 123.3 E(32554): 1.1e-28
Smith-Waterman score: 537; 43.2% identity (75.0% similar) in 192 aa overlap (1-192:1-190)

               10        20        30        40        50        60
pF1KE0 MEAIWLYQFRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEPGKRIKL
       :   . . :...:::.. .:::::...: :..: : :. :.::.: ::.:..  :: .::
CCDS33 MAETYDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNV-GGKTVKL
               10        20        30        40        50          

               70        80        90       100       110       120
pF1KE0 QIWDTAGQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEWLEETKVHVQPYQIVFVL
       :::::::::::::.::.:::...:.::..:::.:......  :: .... ..: .:: .:
CCDS33 QIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASP-NIVVIL
      60        70        80        90       100       110         

              130       140       150       160       170       180
pF1KE0 VGHKCDLDTQRQVTRHEAEKLAAAYGMKYIETSARDAINVEKAFTDLTRDIYELVKRGEI
        :.: ::: .:.::  :: ..:    . ..::::  . :::.::   .: : . .  ::.
CCDS33 CGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDSGEL
      120       130       140       150       160       170        

              190       200       210     
pF1KE0 TIQEGWEGVKSGFVPNVVHSSEEVVKSERRCLC  
         ..   :.. :                       
CCDS33 DPERMGSGIQYGDASLRQLRQPRSAQAVAPQPCGC
      180       190       200       210   

>>CCDS1720.1 RAB10 gene_id:10890|Hs108|chr2               (200 aa)
 initn: 399 init1: 239 opt: 529  Z-score: 619.4  bits: 121.6 E(32554): 3.5e-28
Smith-Waterman score: 529; 46.6% identity (79.1% similar) in 163 aa overlap (9-171:10-170)

                10        20        30        40        50         
pF1KE0  MEAIWLYQFRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEPGKRIK
                :.:..:::: :::.:.. ::..  :  .   :.:.::  . ::.. ::.::
CCDS17 MAKKTYDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQ-GKKIK
               10        20        30        40        50          

      60        70        80        90       100       110         
pF1KE0 LQIWDTAGQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEWLEETKVHVQPYQIVFV
       ::::::::::::..:: .:::...: .:..:::: .::.:. .::..   :..  ..  .
CCDS17 LQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANE-DVERM
      60        70        80        90       100       110         

     120       130       140       150       160       170         
pF1KE0 LVGHKCDLDTQRQVTRHEAEKLAAAYGMKYIETSARDAINVEKAFTDLTRDIYELVKRGE
       :.:.:::.: .: : . ..:..:  .:....::::.  ::.::::  :..::        
CCDS17 LLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKE
      120       130       140       150       160       170        

     180       190       200       210   
pF1KE0 ITIQEGWEGVKSGFVPNVVHSSEEVVKSERRCLC
                                         
CCDS17 PNSENVDISSGGGVTGWKSKCC            
      180       190       200            




213 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 02:19:44 2016 done: Fri Nov  4 02:19:45 2016
 Total Scan time:  1.890 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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