GENSCAN 1.0	Date run:  3-Nov-116	Time: 23:27:53

Sequence gi568815594r:17387134_17611993 : 224860 bp : 43.59% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   9449   9509   61  1  1   78   19   230 0.120  16.51
 1.02 Term +  16905  17050  146  1  2   89   51    46 0.080  -0.93
 1.03 PlyA +  17247  17252    6                               1.05

 2.00 Prom +  23337  23376   40                              -0.86
 2.01 Init +  27268  27427  160  0  1   83   -3   180 0.690   6.40
 2.02 Term +  27438  27655  218  1  2   31   55   152 0.790   3.51
 2.03 PlyA +  28126  28131    6                               1.05

 3.00 Prom +  28432  28471   40                              -2.36
 3.01 Init +  30140  30202   63  1  0   90   90    16 0.562   3.15
 3.02 Intr +  32906  33083  178  1  1   81   83    43 0.626   2.59
 3.03 Term +  39618  39664   47  1  2  111   43    58 0.716   0.97
 3.04 PlyA +  39722  39727    6                               1.05

 4.02 PlyA -  39789  39784    6                               1.05
 4.01 Sngl -  40775  40563  213  2  0   82   41   153 0.885   5.18
 4.00 Prom -  44005  43966   40                              -4.06

 5.00 Prom +  44154  44193   40                              -4.66
 5.01 Init +  45154  45259  106  0  1   82   87    49 0.195   4.58
 5.02 Term +  56845  57065  221  2  2   71   44   153 0.652   6.40
 5.03 PlyA +  58162  58167    6                               1.05

 6.04 PlyA -  58929  58924    6                               1.05
 6.03 Term -  60045  59885  161  1  2   54   38   129 0.255   2.60
 6.02 Intr -  69414  69328   87  1  0  131   66     3 0.008   2.34
 6.01 Init -  77582  77573   10  2  1   98  116     8 0.435   5.20
 6.00 Prom -  94970  94931   40                              -3.26

 7.07 PlyA -  95923  95918    6                               1.05
 7.06 Term - 103612 103525   88  0  1  118   48    42 0.397   0.33
 7.05 Intr - 105207 105099  109  1  1  102  105   175 0.973  19.94
 7.04 Intr - 114726 114586  141  1  0   67  107    91 0.977   9.22
 7.03 Intr - 117342 117246   97  0  1   55   65    74 0.884   1.38
 7.02 Intr - 122247 122138  110  1  2   38   68   126 0.470   5.60
 7.01 Init - 124921 124519  403  1  1   89   64   310 0.637  23.49
 7.00 Prom - 126720 126681   40                              -5.66

 8.00 Prom + 127806 127845   40                              -6.56
 8.01 Init + 128134 128386  253  0  1   64   72   238 0.960  16.21
 8.02 Intr + 135526 135681  156  2  0   57   87   109 0.973   7.68
 8.03 Intr + 135731 135910  180  0  0   77  110   267 0.999  27.64
 8.04 Term + 139684 139949  266  2  2   15   38   432 0.967  26.57
 8.05 PlyA + 142922 142927    6                               1.05

 9.00 Prom + 147174 147213   40                              -3.76
 9.01 Init + 172613 172669   57  1  0   79   79    -4 0.204  -0.89
 9.02 Intr + 176635 176708   74  0  2   95   42    64 0.762   0.70
 9.03 Intr + 177402 177566  165  0  0  110   20   136 0.712   8.08
 9.04 Intr + 178160 178354  195  2  0   95   13   153 0.926   7.03
 9.05 Term + 178938 179154  217  0  1   61   28   162 0.536   4.12
 9.06 PlyA + 184239 184244    6                               1.05

10.00 Prom + 186432 186471   40                              -6.06
10.01 Init + 190333 190434  102  0  0   62  100   117 0.792   8.54
10.02 Intr + 192691 192806  116  0  2   87  103     5 0.812   1.15
10.03 Intr + 194627 194681   55  2  1  101   80    26 0.883   2.08
10.04 Intr + 195155 195260  106  1  1   32   30   125 0.981   0.89
10.05 Intr + 196350 196509  160  1  1   85   59   172 0.992  13.05
10.06 Intr + 197839 198003  165  1  0   75   91    91 0.993   7.18
10.07 Intr + 201686 201844  159  2  0   98   68   188 0.999  16.90
10.08 Intr + 208277 208401  125  2  2   77   97   101 0.996  10.13
10.09 Intr + 209913 210011   99  1  0   57   45    91 0.604   1.78
10.10 Intr + 210656 210744   89  0  2  105   89    32 0.777   4.69
10.11 Intr + 211323 211425  103  2  1  105   71    51 0.886   4.85
10.12 Intr + 217455 217534   80  1  2  106   75    15 0.864   1.27
10.13 Intr + 219696 219805  110  2  2   90   91    50 0.860   4.58
10.14 Term + 220267 220456  190  1  1  115   32    63 0.862   0.32
10.15 PlyA + 220521 220526    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term +  69699  69851  153  2  0   61   37   187 0.965   8.82


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815594r:17387134_17611993|GENSCAN_predicted_peptide_1|68_aa
MVIDDDNDDEGGDDEDEDEDGELRPLAIVTFHTTLGLPPLFNEKIGFVLTLGKHLEYQKP
VCRKAAAI

>gi568815594r:17387134_17611993|GENSCAN_predicted_CDS_1|207_bp
atggtcatcgacgatgacaatgatgatgaaggtggtgatgatgaagatgaagatgaggat
ggtgaacttaggcctctggccattgtgacttttcatacaacccttggtttgcctccatta
ttcaatgagaaaataggttttgttttaacactgggcaagcatctggagtaccagaaacct
gtctgcagaaaagcagcagcaatatga

>gi568815594r:17387134_17611993|GENSCAN_predicted_peptide_2|125_aa
MAGCRSRALARGEAAEALRESECGAGGQAVLGDPAHPLQLLARVLSPSLPGASGRSECGA
RGARAHLELALARKRHAQLGFLPVPLPPHLPASIGSRLRSRPAQRGAPTVQQRAEGFLKC
SQSGR

>gi568815594r:17387134_17611993|GENSCAN_predicted_CDS_2|378_bp
atggcaggctgcaggtcccgagccctggcccgcggggaggcggctgaggccctgcgagaa
tccgagtgcggcgcgggcgggcaggcagtgctgggggacccggcgcaccctctgcagctg
ctggcccgggtgctaagcccctcactgcccggggccagcggccgctccgagtgcggagcc
cgcggagcccgagcccacctggaactcgcgctggcccgcaagcgccacgcgcagcttggg
ttcttgcctgtgcctctccctccacaccttcctgcaagcatagggagccggctccggtct
cggccagcccagcgaggggctcccacagtgcagcagcgggctgaagggttcctcaagtgc
agccagagtggacgctga

>gi568815594r:17387134_17611993|GENSCAN_predicted_peptide_3|95_aa
MGLQLFLMKFHVSLPEKASVRRMPSTPDLGKQATDLESSLLYFRIISATNLFKFSLALDL
SNKNANPSLTGLLSRLNNDREFLIPHYQLADIQWN

>gi568815594r:17387134_17611993|GENSCAN_predicted_CDS_3|288_bp
atggggcttcagcttttcctaatgaagtttcacgtgtcccttcctgaaaaagccagtgtc
aggaggatgccctcgacaccagatttaggaaagcaagcaacagatttggagtcaagtctc
ctgtatttcagaattatctcagctactaacctcttcaagttttcattggctctagatctg
tcgaataagaatgctaatccttcactcacaggattgttgtcaaggttaaataatgacaga
gagttcctcatccctcactatcagcttgcagatatccagtggaactga

>gi568815594r:17387134_17611993|GENSCAN_predicted_peptide_4|70_aa
MHGAILEDLVFPSEIVHKRLCMKLDGSRLMKVHSDKAQQNNVEHRVETFSGVYKKLTGKD
VNFEFQGFQL

>gi568815594r:17387134_17611993|GENSCAN_predicted_CDS_4|213_bp
atgcatggtgccatccttgaggacttggttttcccaagtgaaattgtgcacaagagactc
tgcatgaaactggatggcagccggctcatgaaggttcattcagacaaagcacagcagaac
aacgtggaacacagggttgagactttttctggtgtctataagaagctcactggcaaggat
gttaattttgaattccaagggtttcagttgtaa

>gi568815594r:17387134_17611993|GENSCAN_predicted_peptide_5|108_aa
MAILSKKNKSGGITLPNFKLYYNAIVIKIAWYWYKSTLCKLSVELPFWGLEDDGLLLTAP
LGSAPVRTLCGDPNPTFLFHTALREVLHEGSAPAANFCLDIQAFPYIL

>gi568815594r:17387134_17611993|GENSCAN_predicted_CDS_5|327_bp
atggcaatactaagcaaaaagaacaaatctggaggcatcacattaccaaacttcaaatta
tactacaatgctatcgttatcaaaatagcatggtactggtataaaagcacactgtgcaag
ctgtcagtggaactaccattctggggtctggaggatgatggccttcttctcacagctcca
ctaggcagtgccccagtgcggactctgtgtggggaccccaaccccacatttctcttccac
actgctctaagagaggttctccatgagggctctgctcctgcagcaaatttctgcctggac
atccaggcatttccatacatcctctga

>gi568815594r:17387134_17611993|GENSCAN_predicted_peptide_6|85_aa
MAEDTLLLNNKLVSSPPLQMSYSSLRVPALNLVSKFESTNNDGSLHQVTVLGCGATKMKK
ECSCPRGAHSLVGGNNADITGYGTS

>gi568815594r:17387134_17611993|GENSCAN_predicted_CDS_6|258_bp
atggcggaagacactttacttctgaacaacaaattggtgtctagtccccctttacaaatg
agttatagttctttgagagtaccagctttaaatctagtgagcaaatttgagtcaacaaat
aacgatgggagcttacatcaagtgactgtgcttggctgtggggctaccaagatgaagaag
gaatgctcctgccctcgaggagctcacagtctagtgggagggaacaatgcggacataact
ggctacggaacaagttag

>gi568815594r:17387134_17611993|GENSCAN_predicted_peptide_7|315_aa
MAAAAAAGEARRVLVYGGRGALGSRCVQAFRARNWVMLRAGAAGSPRGWPGAFVWNPAGG
SLEEGGGPCAPPDSCCLHVRAQVYASIPVSECVRTPVPGRWAFAVQGGAPWASARPKKSG
VTRERIPKGRNGSRAVFSFQWVASVDVVENEEASASIIVKMTDSFTEQADQVTAEVGKLL
GEEKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLA
GAKAALDGTPGMIGYGMAKGAVHQLCQSLAGKNSGMPPGAAAIAVLPVTLDTPMNRKSMP
EADFSSWTPLEFLVE

>gi568815594r:17387134_17611993|GENSCAN_predicted_CDS_7|948_bp
atggcggcggcggcggctgcaggcgaggcgcgccgggtgctggtgtacggcggcaggggc
gctctgggttctcgatgcgtgcaggcttttcgggcccgcaactgggtaatgctgcgggct
ggggctgctgggtctccgcgggggtggccgggggctttcgtgtggaacccggcggggggc
agtctagaggaaggtgggggcccctgtgcaccccctgactcgtgttgcttgcacgtgcgc
gcacaggtctacgcgtctattcctgtttccgagtgcgtgcgcacgccagtcccagggcgc
tgggcctttgctgtgcaaggaggtgctccgtgggcctccgccagacccaaaaagtccggc
gtgactcgggagagaattccaaaggggaggaacgggagcagggctgttttctccttccag
tgggttgccagcgttgatgtggtggagaatgaagaggccagcgctagcatcattgttaaa
atgacagactcgttcactgagcaggctgaccaggtgactgctgaggttggaaagctcttg
ggtgaagagaaggtggatgcaattctttgcgttgctggaggatgggccgggggcaatgcc
aaatccaagtctctctttaagaactgtgacctgatgtggaagcagagcatatggacatcg
accatctccagccatctggctaccaagcatctcaaggaaggaggcctcctgaccttggct
ggcgcaaaggctgccctggatgggactcctggtatgatcgggtacggcatggccaagggt
gctgttcaccagctctgccagagcctggctgggaagaacagcggcatgccgcccggggca
gccgccatcgctgtgctcccggttaccctggataccccgatgaacaggaaatcaatgcct
gaggctgacttcagctcctggacacccttagaattcctagttgagtga

>gi568815594r:17387134_17611993|GENSCAN_predicted_peptide_8|284_aa
MPGWFKKAWYGLASLLSFSSFILIIVALVVPHWLSGKILCQTGVDLVNATDRELVKFIGD
IYYGLFRGCKVRQCGLGGRQSQFTRTEACWSTDKHESGGHEFISESLPLFEIPTLAVLPS
PLSVEAFVVSKLGLHEIFPHLVKELNAGLHVMILLLLFLALALALVSMGFAILNMIQVPY
RAVSGPGGICLWNVLAGGVVALAIASFVAAVKFHDLTERIANFQEKLFQFVVVEEQYEES
FWICVASASAHAANLVVVAISQIPLPEIKTKIEEATVTAEDILY

>gi568815594r:17387134_17611993|GENSCAN_predicted_CDS_8|855_bp
atgcctggatggttcaaaaaggcgtggtatgggctggcgtctttactcagcttctcctcc
ttcatcctgatcatcgttgccctggtagtgccccactggctgagtgggaaaatcctttgt
cagactggagtggatctggtcaacgccacagacagagagctggtcaagttcattggggac
atttactacgggctcttccgagggtgtaaagtgcggcagtgtgggcttgggggccgccaa
tcccaattcacgagaacagaggcttgttggtcaactgacaagcatgaatctgggggccat
gagttcatctcagaaagtctcccgctgtttgaaatccccacgcttgctgtcttgccctca
cccctgtctgtcgaagccttcgtggtaagcaagcttggacttcatgaaatcttcccacac
ctggtgaaggagctcaacgcaggccttcatgtgatgattctgctgctcctcttcctggcc
ttggccctggctctggtcagcatgggctttgccattcttaacatgatccaggtcccgtac
cgggcagtcagcggtcctgggggcatctgcctatggaatgtcctggcaggcggcgtcgtg
gcgttagccatcgccagcttcgtggctgcggtgaaatttcacgacctgacggaacgaatc
gccaactttcaggagaagctcttccagtttgtggtggtggaagaacagtatgaagagtcg
ttttggatctgcgtggccagcgcttcggcccatgctgcaaacttggtcgtggtggcgatc
agtcaaattcccctccctgagattaagaccaaaatcgaagaggccacggtcacagctgag
gatatcttgtattaa

>gi568815594r:17387134_17611993|GENSCAN_predicted_peptide_9|235_aa
MMERPETLVSDPFLIAKCQEHGAIEQWNIPLTPSLMKGHMACECTWIENISAKIIPAVAA
VKDRKRCQVFHLSIVSLFLQINSSHVAYCKCDRGPSGHHTWIENVSAKIIPAVAAVKDWK
RCQVFCLSIVSLSLQINSSHVAYCKCDRGPSGHQWEPHHQTSDGIGTQVLDKDDTHLVID
CVEIANATACAIKDQRDALNSLAKVVMDNESSQLSAGKMGWHLHDCQHLLLGINQ

>gi568815594r:17387134_17611993|GENSCAN_predicted_CDS_9|708_bp
atgatggaaaggcctgaaacattggtttctgaccccttccttatagcaaaatgccaggaa
catggagccattgaacagtggaacatcccactcacaccgtcactgatgaaaggacacatg
gcctgcgaatgtacatggattgagaacatatcagcgaagatcatcccagcagtagcagca
gtgaaagaccggaagcgttgccaggtcttccacttgagtattgtgagcctattcctccag
attaatagttcacatgtggcctattgcaaatgtgacaggggtcccagtggccatcataca
tggattgagaacgtatcagcgaagatcatcccagcagtagcagcagtgaaagactggaag
cgttgccaggtcttctgcttgagtattgtgagcctatccctccagattaatagttcacat
gtggcctattgcaaatgtgacaggggtcccagtggccatcagtgggagccacaccaccag
acatcagacggtataggcacacaggtcctggataaagatgatacacatcttgtcattgac
tgtgtggagatagcgaatgctactgcctgtgctattaaggaccagcgggatgcattaaac
tcactagccaaggtggtgatggacaacgaaagttctcaattatctgctggcaaaatggga
tggcatttgcatgactgccaacacctcttgctgggtataaatcaataa

>gi568815594r:17387134_17611993|GENSCAN_predicted_peptide_10|552_aa
MFLLPLPAAGRVVVRRLAVRRFGSRSLSTADMTKGLVLGIYSKEKEDDVPQFTSAGENFD
KLLAGKLRETLNISGPPLKAGKTRTFYGLHQDFPSVVLVGLGKKAAGIDEQENWHEGKEN
IRAAVAAGCRQIQDLELSSVEVDPCGDAQAAAEGAVLGLYEYDDLKQKKKMAVSAKLYGS
GDQEAWQKGVLFASGQNLARQLMETPANEMTPTRFAEIIEKNLKSASSKTEVHIRPKSWI
EEQAMGSFLSVAKGSDEPPVFLEIHYKGSPNANEPPLVFVGKGITFDSGGISIKASANMD
LMRADMGGAATICSAIVSAAKLNLPINIIGLAPLCENMPSGKANKPGDVVRAKNGKTIQV
CKCVEVEHTVLHHGPCTEGDVAAGPLGGTCMQVDNTDAEGRLILADALCYAHTFNPKVIL
NAATLTGAMDVALGSGATGVFTNSSWLWNKLFEASIETGDRVWRMPLFEHYTRQVVDCQL
ADVNNIGKYRSAGACTAAAFLKEFVTHPKWAHLDIAGVMTNKDEVPYLRKGMTGRPTRTL
IEFLLRFSQDNA

>gi568815594r:17387134_17611993|GENSCAN_predicted_CDS_10|1659_bp
atgttcttgctgcctcttccggctgcggggcgagtagtcgtccgacgtctggccgtgaga
cgtttcgggagccggagtctctccaccgcagacatgacgaagggccttgttttaggaatc
tattccaaagaaaaagaagatgatgtgccacagttcacaagtgcaggagagaattttgat
aaattgttagctggaaagctgagagagactttgaacatatctggaccacctctgaaggca
gggaagactcgaaccttttatggtctgcatcaggacttccccagcgtggtgctagttggc
ctcggcaaaaaggcagctggaatcgacgaacaggaaaactggcatgaaggcaaagaaaac
atcagagctgctgttgcagcggggtgcaggcagattcaagacctggagctctcgtctgtg
gaggtggatccctgtggagacgctcaggctgctgcggagggagcggtgcttggtctctat
gaatacgatgacctaaagcaaaaaaagaagatggctgtgtcggcaaagctctatggaagt
ggggatcaggaggcctggcagaaaggagtcctgtttgcttctgggcagaacttggcacgc
caattgatggagacgccagccaatgagatgacgccaaccagatttgctgaaattattgag
aagaatctcaaaagtgctagtagtaaaaccgaggtccatatcagacccaagtcttggatt
gaggaacaggcaatgggatcattcctcagtgtggccaaaggatctgacgagcccccagtc
ttcttggaaattcactacaaaggcagccccaatgcaaacgaaccacccctggtgtttgtt
gggaaaggaattacctttgacagtggtggtatctccatcaaggcttctgcaaatatggac
ctcatgagggctgacatgggaggagctgcaactatatgctcagccatcgtgtctgctgca
aagcttaatttgcccattaatattataggtctggcccctctttgtgaaaatatgcccagc
ggcaaggccaacaagccgggggatgttgttagagccaaaaacgggaagaccatccaggtt
tgtaaatgtgttgaggtagaacatactgtcctacatcatgggccctgcactgaaggggat
gtggcagcaggtcctctgggtggcacgtgcatgcaggttgataacactgatgctgagggg
aggctcatactggctgatgcgctctgttacgcacacacgtttaacccgaaggtcatcctc
aatgccgccaccttaacaggtgccatggatgtagctttgggatcaggtgccactggggtc
tttaccaattcatcctggctctggaacaaactcttcgaggccagcattgaaacaggggac
cgtgtctggaggatgcctctcttcgaacattatacaagacaggttgtagattgccagctt
gctgatgttaacaacattggaaaatacagatctgcaggagcatgtacagctgcagcattc
ctgaaagaattcgtaactcatcctaagtgggcacatttagacatagcaggcgtgatgacc
aacaaagatgaagttccctatctacggaaaggcatgactgggaggcccacaaggactctc
attgagttcttacttcgtttcagtcaagacaatgcttag