Result of FASTA (ccds) for pF1KB6862
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6862, 195 aa
  1>>>pF1KB6862 195 - 195 aa - 195 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4733+/-0.000703; mu= 13.3187+/- 0.043
 mean_var=71.2795+/-14.451, 0's: 0 Z-trim(110.8): 30  B-trim: 378 in 2/51
 Lambda= 0.151912
 statistics sampled from 11851 (11877) to 11851 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.738), E-opt: 0.2 (0.365), width:  16
 Scan time:  2.290

The best scores are:                                      opt bits E(32554)
CCDS10708.1 PYCARD gene_id:29108|Hs108|chr16       ( 195) 1264 285.3 1.6e-77
CCDS10709.1 PYCARD gene_id:29108|Hs108|chr16       ( 176)  580 135.3   2e-32
CCDS10710.1 PYDC1 gene_id:260434|Hs108|chr16       (  89)  344 83.5 4.2e-17
CCDS58508.1 NLRP1 gene_id:22861|Hs108|chr17        (1399)  332 81.5 2.6e-15
CCDS42245.1 NLRP1 gene_id:22861|Hs108|chr17        (1429)  332 81.5 2.6e-15
CCDS42244.1 NLRP1 gene_id:22861|Hs108|chr17        (1443)  332 81.5 2.7e-15
CCDS42246.1 NLRP1 gene_id:22861|Hs108|chr17        (1473)  332 81.5 2.7e-15


>>CCDS10708.1 PYCARD gene_id:29108|Hs108|chr16            (195 aa)
 initn: 1264 init1: 1264 opt: 1264  Z-score: 1505.1  bits: 285.3 E(32554): 1.6e-77
Smith-Waterman score: 1264; 100.0% identity (100.0% similar) in 195 aa overlap (1-195:1-195)

               10        20        30        40        50        60
pF1KB6 MGRARDAILDALENLTAEELKKFKLKLLSVPLREGYGRIPRGALLSMDALDLTDKLVSFY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MGRARDAILDALENLTAEELKKFKLKLLSVPLREGYGRIPRGALLSMDALDLTDKLVSFY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 LETYGAELTANVLRDMGLQEMAGQLQAATHQGSGAAPAGIQAPPQSAAKPGLHFIDQHRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LETYGAELTANVLRDMGLQEMAGQLQAATHQGSGAAPAGIQAPPQSAAKPGLHFIDQHRA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 ALIARVTNVEWLLDALYGKVLTDEQYQAVRAEPTNPSKMRKLFSFTPAWNWTCKDLLLQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ALIARVTNVEWLLDALYGKVLTDEQYQAVRAEPTNPSKMRKLFSFTPAWNWTCKDLLLQA
              130       140       150       160       170       180

              190     
pF1KB6 LRESQSYLVEDLERS
       :::::::::::::::
CCDS10 LRESQSYLVEDLERS
              190     

>>CCDS10709.1 PYCARD gene_id:29108|Hs108|chr16            (176 aa)
 initn: 579 init1: 579 opt: 580  Z-score: 695.5  bits: 135.3 E(32554): 2e-32
Smith-Waterman score: 1087; 90.3% identity (90.3% similar) in 195 aa overlap (1-195:1-176)

               10        20        30        40        50        60
pF1KB6 MGRARDAILDALENLTAEELKKFKLKLLSVPLREGYGRIPRGALLSMDALDLTDKLVSFY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MGRARDAILDALENLTAEELKKFKLKLLSVPLREGYGRIPRGALLSMDALDLTDKLVSFY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 LETYGAELTANVLRDMGLQEMAGQLQAATHQGSGAAPAGIQAPPQSAAKPGLHFIDQHRA
       ::::::::::::::::::::::::::::::::                   :::::::::
CCDS10 LETYGAELTANVLRDMGLQEMAGQLQAATHQG-------------------LHFIDQHRA
               70        80        90                          100 

              130       140       150       160       170       180
pF1KB6 ALIARVTNVEWLLDALYGKVLTDEQYQAVRAEPTNPSKMRKLFSFTPAWNWTCKDLLLQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ALIARVTNVEWLLDALYGKVLTDEQYQAVRAEPTNPSKMRKLFSFTPAWNWTCKDLLLQA
             110       120       130       140       150       160 

              190     
pF1KB6 LRESQSYLVEDLERS
       :::::::::::::::
CCDS10 LRESQSYLVEDLERS
             170      

>>CCDS10710.1 PYDC1 gene_id:260434|Hs108|chr16            (89 aa)
 initn: 344 init1: 344 opt: 344  Z-score: 420.4  bits: 83.5 E(32554): 4.2e-17
Smith-Waterman score: 344; 64.8% identity (81.8% similar) in 88 aa overlap (1-88:1-88)

               10        20        30        40        50        60
pF1KB6 MGRARDAILDALENLTAEELKKFKLKLLSVPLREGYGRIPRGALLSMDALDLTDKLVSFY
       ::  :.::: .::::: :::::::.:: .::::::. ::::::: ..: .:::::::. :
CCDS10 MGTKREAILKVLENLTPEELKKFKMKLGTVPLREGFERIPRGALGQLDIVDLTDKLVASY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 LETYGAELTANVLRDMGLQEMAGQLQAATHQGSGAAPAGIQAPPQSAAKPGLHFIDQHRA
        : :.:::.. ::::: . : :..:: :                                
CCDS10 YEDYAAELVVAVLRDMRMLEEAARLQRAA                               
               70        80                                        

>>CCDS58508.1 NLRP1 gene_id:22861|Hs108|chr17             (1399 aa)
 initn: 412 init1: 328 opt: 332  Z-score: 388.4  bits: 81.5 E(32554): 2.6e-15
Smith-Waterman score: 332; 44.5% identity (65.1% similar) in 146 aa overlap (54-192:1243-1385)

            30        40        50         60        70          80
pF1KB6 KLKLLSVPLREGYGRIPRGALLSMDALDLTDKLVS-FYLETYGAELTANVL--RDMGLQE
                                     :.: : ::.   :. .  .:   .:  :  
CCDS58 PEEVTFHLYLIPSDCSIRKELELCYRSPGEDQLFSEFYVGHLGSGIRLQVKDKKDETLVW
           1220      1230      1240      1250      1260      1270  

                   90       100       110       120       130      
pF1KB6 MA----GQLQAATHQGSGAAPAGIQAPPQSAAKPGLHFIDQHRAALIARVTNVEWLLDAL
        :    :.:. ::   .   :: : .:    :   :::.::.:  ::::::.:: .:: :
CCDS58 EALVKPGDLMPAT---TLIPPARIAVPSPLDAPQLLHFVDQYREQLIARVTSVEVVLDKL
           1280         1290      1300      1310      1320         

        140       150       160       170       180       190      
pF1KB6 YGKVLTDEQYQAVRAEPTNPSKMRKLFSFTPAWNWTCKDLLLQALRESQSYLVEDLERS 
       .:.::..:::. : :: : ::.::::::.. .:.  ::: : :::.:.. .:. .:    
CCDS58 HGQVLSQEQYERVLAENTRPSQMRKLFSLSQSWDRKCKDGLYQALKETHPHLIMELWEKG
    1330      1340      1350      1360      1370      1380         

CCDS58 SKKGLLPLSS
    1390         

>>CCDS42245.1 NLRP1 gene_id:22861|Hs108|chr17             (1429 aa)
 initn: 412 init1: 328 opt: 332  Z-score: 388.2  bits: 81.5 E(32554): 2.6e-15
Smith-Waterman score: 332; 44.5% identity (65.1% similar) in 146 aa overlap (54-192:1273-1415)

            30        40        50         60        70          80
pF1KB6 KLKLLSVPLREGYGRIPRGALLSMDALDLTDKLVS-FYLETYGAELTANVL--RDMGLQE
                                     :.: : ::.   :. .  .:   .:  :  
CCDS42 PEEVTFHLYLIPSDCSIRKELELCYRSPGEDQLFSEFYVGHLGSGIRLQVKDKKDETLVW
           1250      1260      1270      1280      1290      1300  

                   90       100       110       120       130      
pF1KB6 MA----GQLQAATHQGSGAAPAGIQAPPQSAAKPGLHFIDQHRAALIARVTNVEWLLDAL
        :    :.:. ::   .   :: : .:    :   :::.::.:  ::::::.:: .:: :
CCDS42 EALVKPGDLMPAT---TLIPPARIAVPSPLDAPQLLHFVDQYREQLIARVTSVEVVLDKL
           1310         1320      1330      1340      1350         

        140       150       160       170       180       190      
pF1KB6 YGKVLTDEQYQAVRAEPTNPSKMRKLFSFTPAWNWTCKDLLLQALRESQSYLVEDLERS 
       .:.::..:::. : :: : ::.::::::.. .:.  ::: : :::.:.. .:. .:    
CCDS42 HGQVLSQEQYERVLAENTRPSQMRKLFSLSQSWDRKCKDGLYQALKETHPHLIMELWEKG
    1360      1370      1380      1390      1400      1410         

CCDS42 SKKGLLPLSS
    1420         

>>CCDS42244.1 NLRP1 gene_id:22861|Hs108|chr17             (1443 aa)
 initn: 412 init1: 328 opt: 332  Z-score: 388.2  bits: 81.5 E(32554): 2.7e-15
Smith-Waterman score: 332; 44.5% identity (65.1% similar) in 146 aa overlap (54-192:1287-1429)

            30        40        50         60        70          80
pF1KB6 KLKLLSVPLREGYGRIPRGALLSMDALDLTDKLVS-FYLETYGAELTANVL--RDMGLQE
                                     :.: : ::.   :. .  .:   .:  :  
CCDS42 GCRYTVSGSGSGMLEILPKELELCYRSPGEDQLFSEFYVGHLGSGIRLQVKDKKDETLVW
       1260      1270      1280      1290      1300      1310      

                   90       100       110       120       130      
pF1KB6 MA----GQLQAATHQGSGAAPAGIQAPPQSAAKPGLHFIDQHRAALIARVTNVEWLLDAL
        :    :.:. ::   .   :: : .:    :   :::.::.:  ::::::.:: .:: :
CCDS42 EALVKPGDLMPAT---TLIPPARIAVPSPLDAPQLLHFVDQYREQLIARVTSVEVVLDKL
       1320         1330      1340      1350      1360      1370   

        140       150       160       170       180       190      
pF1KB6 YGKVLTDEQYQAVRAEPTNPSKMRKLFSFTPAWNWTCKDLLLQALRESQSYLVEDLERS 
       .:.::..:::. : :: : ::.::::::.. .:.  ::: : :::.:.. .:. .:    
CCDS42 HGQVLSQEQYERVLAENTRPSQMRKLFSLSQSWDRKCKDGLYQALKETHPHLIMELWEKG
          1380      1390      1400      1410      1420      1430   

CCDS42 SKKGLLPLSS
          1440   

>>CCDS42246.1 NLRP1 gene_id:22861|Hs108|chr17             (1473 aa)
 initn: 412 init1: 328 opt: 332  Z-score: 388.0  bits: 81.5 E(32554): 2.7e-15
Smith-Waterman score: 332; 44.5% identity (65.1% similar) in 146 aa overlap (54-192:1317-1459)

            30        40        50         60        70          80
pF1KB6 KLKLLSVPLREGYGRIPRGALLSMDALDLTDKLVS-FYLETYGAELTANVL--RDMGLQE
                                     :.: : ::.   :. .  .:   .:  :  
CCDS42 GCRYTVSGSGSGMLEILPKELELCYRSPGEDQLFSEFYVGHLGSGIRLQVKDKKDETLVW
       1290      1300      1310      1320      1330      1340      

                   90       100       110       120       130      
pF1KB6 MA----GQLQAATHQGSGAAPAGIQAPPQSAAKPGLHFIDQHRAALIARVTNVEWLLDAL
        :    :.:. ::   .   :: : .:    :   :::.::.:  ::::::.:: .:: :
CCDS42 EALVKPGDLMPAT---TLIPPARIAVPSPLDAPQLLHFVDQYREQLIARVTSVEVVLDKL
       1350         1360      1370      1380      1390      1400   

        140       150       160       170       180       190      
pF1KB6 YGKVLTDEQYQAVRAEPTNPSKMRKLFSFTPAWNWTCKDLLLQALRESQSYLVEDLERS 
       .:.::..:::. : :: : ::.::::::.. .:.  ::: : :::.:.. .:. .:    
CCDS42 HGQVLSQEQYERVLAENTRPSQMRKLFSLSQSWDRKCKDGLYQALKETHPHLIMELWEKG
          1410      1420      1430      1440      1450      1460   

CCDS42 SKKGLLPLSS
          1470   




195 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 00:06:26 2016 done: Sat Nov  5 00:06:27 2016
 Total Scan time:  2.290 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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