Result of FASTA (omim) for pF1KB6813
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6813, 160 aa
  1>>>pF1KB6813 160 - 160 aa - 160 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5376+/-0.00029; mu= 11.3459+/- 0.018
 mean_var=80.3723+/-15.803, 0's: 0 Z-trim(117.9): 17  B-trim: 245 in 1/57
 Lambda= 0.143061
 statistics sampled from 30398 (30415) to 30398 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.743), E-opt: 0.2 (0.357), width:  16
 Scan time:  4.680

The best scores are:                                      opt bits E(85289)
NP_006592 (OMIM: 607061) prostaglandin E synthase  ( 160) 1146 245.3   3e-65
XP_005268633 (OMIM: 607061) PREDICTED: prostagland ( 164) 1139 243.9 8.4e-65
NP_001269533 (OMIM: 607061) prostaglandin E syntha ( 164) 1139 243.9 8.4e-65
XP_011536075 (OMIM: 607061) PREDICTED: prostagland ( 161) 1050 225.5 2.8e-59
XP_016874205 (OMIM: 607061) PREDICTED: prostagland ( 165) 1043 224.1 7.8e-59
NP_001269530 (OMIM: 607061) prostaglandin E syntha ( 139)  906 195.8 2.2e-50
XP_011536076 (OMIM: 607061) PREDICTED: prostagland ( 143)  899 194.3 6.2e-50
NP_001269531 (OMIM: 607061) prostaglandin E syntha ( 130)  687 150.6 8.5e-37
XP_006719262 (OMIM: 607061) PREDICTED: prostagland ( 134)  680 149.1 2.4e-36
NP_001269534 (OMIM: 607061) prostaglandin E syntha ( 109)  675 148.0 4.1e-36
NP_001269532 (OMIM: 607061) prostaglandin E syntha ( 127)  472 106.2 1.9e-23


>>NP_006592 (OMIM: 607061) prostaglandin E synthase 3 is  (160 aa)
 initn: 1146 init1: 1146 opt: 1146  Z-score: 1292.3  bits: 245.3 E(85289): 3e-65
Smith-Waterman score: 1146; 100.0% identity (100.0% similar) in 160 aa overlap (1-160:1-160)

               10        20        30        40        50        60
pF1KB6 MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCID
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCID
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 PNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 PNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNF
               70        80        90       100       110       120

              130       140       150       160
pF1KB6 DRFSEMMNNMGGDEDVDLPEVDGADDDSQDSDDEKMPDLE
       ::::::::::::::::::::::::::::::::::::::::
NP_006 DRFSEMMNNMGGDEDVDLPEVDGADDDSQDSDDEKMPDLE
              130       140       150       160

>>XP_005268633 (OMIM: 607061) PREDICTED: prostaglandin E  (164 aa)
 initn: 1139 init1: 1139 opt: 1139  Z-score: 1284.4  bits: 243.9 E(85289): 8.4e-65
Smith-Waterman score: 1139; 100.0% identity (100.0% similar) in 159 aa overlap (2-160:6-164)

                   10        20        30        40        50      
pF1KB6     MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLF
            :::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MFYLRQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLF
               10        20        30        40        50        60

         60        70        80        90       100       110      
pF1KB6 HCIDPNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 HCIDPNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDED
               70        80        90       100       110       120

        120       130       140       150       160
pF1KB6 MSNFDRFSEMMNNMGGDEDVDLPEVDGADDDSQDSDDEKMPDLE
       ::::::::::::::::::::::::::::::::::::::::::::
XP_005 MSNFDRFSEMMNNMGGDEDVDLPEVDGADDDSQDSDDEKMPDLE
              130       140       150       160    

>>NP_001269533 (OMIM: 607061) prostaglandin E synthase 3  (164 aa)
 initn: 1139 init1: 1139 opt: 1139  Z-score: 1284.4  bits: 243.9 E(85289): 8.4e-65
Smith-Waterman score: 1139; 100.0% identity (100.0% similar) in 159 aa overlap (2-160:6-164)

                   10        20        30        40        50      
pF1KB6     MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLF
            :::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSLEKQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLF
               10        20        30        40        50        60

         60        70        80        90       100       110      
pF1KB6 HCIDPNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HCIDPNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDED
               70        80        90       100       110       120

        120       130       140       150       160
pF1KB6 MSNFDRFSEMMNNMGGDEDVDLPEVDGADDDSQDSDDEKMPDLE
       ::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSNFDRFSEMMNNMGGDEDVDLPEVDGADDDSQDSDDEKMPDLE
              130       140       150       160    

>>XP_011536075 (OMIM: 607061) PREDICTED: prostaglandin E  (161 aa)
 initn: 1077 init1: 1050 opt: 1050  Z-score: 1185.2  bits: 225.5 E(85289): 2.8e-59
Smith-Waterman score: 1050; 99.3% identity (99.3% similar) in 148 aa overlap (1-148:1-148)

               10        20        30        40        50        60
pF1KB6 MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCID
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCID
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 PNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNF
               70        80        90       100       110       120

              130       140       150       160 
pF1KB6 DRFSEMMNNMGGDEDVDLPEVDGADDDSQDSDDEKMPDLE 
       :::::::::::::::::::::::::: :             
XP_011 DRFSEMMNNMGGDEDVDLPEVDGADDVSLKILFSVYFHTIK
              130       140       150       160 

>>XP_016874205 (OMIM: 607061) PREDICTED: prostaglandin E  (165 aa)
 initn: 1070 init1: 1043 opt: 1043  Z-score: 1177.3  bits: 224.1 E(85289): 7.8e-59
Smith-Waterman score: 1043; 99.3% identity (99.3% similar) in 147 aa overlap (2-148:6-152)

                   10        20        30        40        50      
pF1KB6     MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLF
            :::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MFYLRQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLF
               10        20        30        40        50        60

         60        70        80        90       100       110      
pF1KB6 HCIDPNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HCIDPNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDED
               70        80        90       100       110       120

        120       130       140       150       160 
pF1KB6 MSNFDRFSEMMNNMGGDEDVDLPEVDGADDDSQDSDDEKMPDLE 
       :::::::::::::::::::::::::::::: :             
XP_016 MSNFDRFSEMMNNMGGDEDVDLPEVDGADDVSLKILFSVYFHTIK
              130       140       150       160     

>>NP_001269530 (OMIM: 607061) prostaglandin E synthase 3  (139 aa)
 initn: 901 init1: 901 opt: 906  Z-score: 1025.5  bits: 195.8 E(85289): 2.2e-50
Smith-Waterman score: 945; 86.9% identity (86.9% similar) in 160 aa overlap (1-160:1-139)

               10        20        30        40        50        60
pF1KB6 MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCID
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCID
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 PNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNF
               70        80        90       100       110       120

              130       140       150       160
pF1KB6 DRFSEMMNNMGGDEDVDLPEVDGADDDSQDSDDEKMPDLE
       :::::                     ::::::::::::::
NP_001 DRFSE---------------------DSQDSDDEKMPDLE
                                   130         

>>XP_011536076 (OMIM: 607061) PREDICTED: prostaglandin E  (143 aa)
 initn: 894 init1: 894 opt: 899  Z-score: 1017.5  bits: 194.3 E(85289): 6.2e-50
Smith-Waterman score: 938; 86.8% identity (86.8% similar) in 159 aa overlap (2-160:6-143)

                   10        20        30        40        50      
pF1KB6     MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLF
            :::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MFYLRQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLF
               10        20        30        40        50        60

         60        70        80        90       100       110      
pF1KB6 HCIDPNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HCIDPNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDED
               70        80        90       100       110       120

        120       130       140       150       160
pF1KB6 MSNFDRFSEMMNNMGGDEDVDLPEVDGADDDSQDSDDEKMPDLE
       :::::::::                     ::::::::::::::
XP_011 MSNFDRFSE---------------------DSQDSDDEKMPDLE
                                   130       140   

>>NP_001269531 (OMIM: 607061) prostaglandin E synthase 3  (130 aa)
 initn: 692 init1: 677 opt: 687  Z-score: 781.6  bits: 150.6 E(85289): 8.5e-37
Smith-Waterman score: 850; 81.2% identity (81.2% similar) in 160 aa overlap (1-160:1-130)

               10        20        30        40        50        60
pF1KB6 MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCID
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCID
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 PNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNF
       :::::::::::::::::::::::::::::::::::                         
NP_001 PNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAK-------------------------
               70        80        90                              

              130       140       150       160
pF1KB6 DRFSEMMNNMGGDEDVDLPEVDGADDDSQDSDDEKMPDLE
            :::::::::::::::::::::::::::::::::::
NP_001 -----MMNNMGGDEDVDLPEVDGADDDSQDSDDEKMPDLE
              100       110       120       130

>>XP_006719262 (OMIM: 607061) PREDICTED: prostaglandin E  (134 aa)
 initn: 685 init1: 670 opt: 680  Z-score: 773.6  bits: 149.1 E(85289): 2.4e-36
Smith-Waterman score: 843; 81.1% identity (81.1% similar) in 159 aa overlap (2-160:6-134)

                   10        20        30        40        50      
pF1KB6     MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLF
            :::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MFYLRQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLF
               10        20        30        40        50        60

         60        70        80        90       100       110      
pF1KB6 HCIDPNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDED
       :::::::::::::::::::::::::::::::::::::::                     
XP_006 HCIDPNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAK---------------------
               70        80        90                              

        120       130       140       150       160
pF1KB6 MSNFDRFSEMMNNMGGDEDVDLPEVDGADDDSQDSDDEKMPDLE
                :::::::::::::::::::::::::::::::::::
XP_006 ---------MMNNMGGDEDVDLPEVDGADDDSQDSDDEKMPDLE
              100       110       120       130    

>>NP_001269534 (OMIM: 607061) prostaglandin E synthase 3  (109 aa)
 initn: 757 init1: 674 opt: 675  Z-score: 769.3  bits: 148.0 E(85289): 4.1e-36
Smith-Waterman score: 678; 82.6% identity (87.6% similar) in 121 aa overlap (1-121:1-109)

               10        20        30        40        50        60
pF1KB6 MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCID
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCID
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 PNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNF
       :::::::::::::::::::::::::::::::::::            : .:..:: : ..
NP_001 PNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAK------------DSQDSDDEKMPDL
               70        80        90                   100        

              130       140       150       160
pF1KB6 DRFSEMMNNMGGDEDVDLPEVDGADDDSQDSDDEKMPDLE
       .                                       
NP_001 E                                       
                                               




160 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 00:02:48 2016 done: Sat Nov  5 00:02:48 2016
 Total Scan time:  4.680 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]
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