Result of FASTA (ccds) for pF1KB6813
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6813, 160 aa
  1>>>pF1KB6813 160 - 160 aa - 160 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4019+/-0.000646; mu= 11.9657+/- 0.039
 mean_var=71.0484+/-13.696, 0's: 0 Z-trim(110.7): 23  B-trim: 68 in 1/54
 Lambda= 0.152159
 statistics sampled from 11823 (11835) to 11823 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.749), E-opt: 0.2 (0.364), width:  16
 Scan time:  1.630

The best scores are:                                      opt bits E(32554)
CCDS31836.1 PTGES3 gene_id:10728|Hs108|chr12       ( 160) 1146 259.9   5e-70
CCDS73485.1 PTGES3 gene_id:10728|Hs108|chr12       ( 164) 1139 258.3 1.5e-69
CCDS61160.1 PTGES3 gene_id:10728|Hs108|chr12       ( 139)  906 207.1 3.2e-54
CCDS61159.1 PTGES3 gene_id:10728|Hs108|chr12       ( 130)  687 159.0   9e-40
CCDS61158.1 PTGES3 gene_id:10728|Hs108|chr12       ( 127)  472 111.8 1.4e-25
CCDS45691.1 AARSD1 gene_id:100885850|Hs108|chr17   ( 586)  427 102.4 4.7e-22
CCDS11447.1 AARSD1 gene_id:100885850|Hs108|chr17   ( 525)  367 89.2   4e-18
CCDS45692.1 PTGES3L gene_id:100885848|Hs108|chr17  ( 161)  317 77.9   3e-15


>>CCDS31836.1 PTGES3 gene_id:10728|Hs108|chr12            (160 aa)
 initn: 1146 init1: 1146 opt: 1146  Z-score: 1370.8  bits: 259.9 E(32554): 5e-70
Smith-Waterman score: 1146; 100.0% identity (100.0% similar) in 160 aa overlap (1-160:1-160)

               10        20        30        40        50        60
pF1KB6 MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCID
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCID
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 PNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNF
               70        80        90       100       110       120

              130       140       150       160
pF1KB6 DRFSEMMNNMGGDEDVDLPEVDGADDDSQDSDDEKMPDLE
       ::::::::::::::::::::::::::::::::::::::::
CCDS31 DRFSEMMNNMGGDEDVDLPEVDGADDDSQDSDDEKMPDLE
              130       140       150       160

>>CCDS73485.1 PTGES3 gene_id:10728|Hs108|chr12            (164 aa)
 initn: 1139 init1: 1139 opt: 1139  Z-score: 1362.3  bits: 258.3 E(32554): 1.5e-69
Smith-Waterman score: 1139; 100.0% identity (100.0% similar) in 159 aa overlap (2-160:6-164)

                   10        20        30        40        50      
pF1KB6     MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLF
            :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MSLEKQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLF
               10        20        30        40        50        60

         60        70        80        90       100       110      
pF1KB6 HCIDPNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 HCIDPNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDED
               70        80        90       100       110       120

        120       130       140       150       160
pF1KB6 MSNFDRFSEMMNNMGGDEDVDLPEVDGADDDSQDSDDEKMPDLE
       ::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MSNFDRFSEMMNNMGGDEDVDLPEVDGADDDSQDSDDEKMPDLE
              130       140       150       160    

>>CCDS61160.1 PTGES3 gene_id:10728|Hs108|chr12            (139 aa)
 initn: 901 init1: 901 opt: 906  Z-score: 1086.9  bits: 207.1 E(32554): 3.2e-54
Smith-Waterman score: 945; 86.9% identity (86.9% similar) in 160 aa overlap (1-160:1-139)

               10        20        30        40        50        60
pF1KB6 MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCID
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCID
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 PNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 PNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNF
               70        80        90       100       110       120

              130       140       150       160
pF1KB6 DRFSEMMNNMGGDEDVDLPEVDGADDDSQDSDDEKMPDLE
       :::::                     ::::::::::::::
CCDS61 DRFSE---------------------DSQDSDDEKMPDLE
                                   130         

>>CCDS61159.1 PTGES3 gene_id:10728|Hs108|chr12            (130 aa)
 initn: 692 init1: 677 opt: 687  Z-score: 827.5  bits: 159.0 E(32554): 9e-40
Smith-Waterman score: 850; 81.2% identity (81.2% similar) in 160 aa overlap (1-160:1-130)

               10        20        30        40        50        60
pF1KB6 MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCID
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCID
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 PNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNF
       :::::::::::::::::::::::::::::::::::                         
CCDS61 PNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAK-------------------------
               70        80        90                              

              130       140       150       160
pF1KB6 DRFSEMMNNMGGDEDVDLPEVDGADDDSQDSDDEKMPDLE
            :::::::::::::::::::::::::::::::::::
CCDS61 -----MMNNMGGDEDVDLPEVDGADDDSQDSDDEKMPDLE
              100       110       120       130

>>CCDS61158.1 PTGES3 gene_id:10728|Hs108|chr12            (127 aa)
 initn: 900 init1: 472 opt: 472  Z-score: 572.6  bits: 111.8 E(32554): 1.4e-25
Smith-Waterman score: 838; 79.4% identity (79.4% similar) in 160 aa overlap (1-160:1-127)

               10        20        30        40        50        60
pF1KB6 MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCID
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCID
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 PNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNF
       ::                                 :::::::::::::::::::::::::
CCDS61 PN---------------------------------LNWLSVDFNNWKDWEDDSDEDMSNF
                                                70        80       

              130       140       150       160
pF1KB6 DRFSEMMNNMGGDEDVDLPEVDGADDDSQDSDDEKMPDLE
       ::::::::::::::::::::::::::::::::::::::::
CCDS61 DRFSEMMNNMGGDEDVDLPEVDGADDDSQDSDDEKMPDLE
        90       100       110       120       

>>CCDS45691.1 AARSD1 gene_id:100885850|Hs108|chr17        (586 aa)
 initn: 444 init1: 272 opt: 427  Z-score: 509.4  bits: 102.4 E(32554): 4.7e-22
Smith-Waterman score: 427; 42.4% identity (71.5% similar) in 144 aa overlap (2-145:47-187)

                                            10        20        30 
pF1KB6                              MQPASAKWYDRRDYVFIEFCVEDSKDVNVNF
                                     : : . ::::  :::.::::::: ::.: .
CCDS45 SCWGRPQDLKIAAPAWNSKCHPGAGAAMARQHARTLWYDRPRYVFMEFCVEDSTDVHVLI
         20        30        40        50        60        70      

              40        50        60        70        80        90 
pF1KB6 EKSKLTFSCLGGSDNFKHLNEIDLFHCIDPNDSKHKRTDRSILCCLRKGESGQSWPRLTK
       :  ...:::  ..:. .  :::...  .. .::. ::..::: : .:: .   .::::::
CCDS45 EDHRIVFSC-KNADGVELYNEIEFYAKVNSKDSQDKRSSRSITCFVRKWKEKVAWPRLTK
         80         90       100       110       120       130     

             100       110       120       130       140       150 
pF1KB6 ERAKLNWLSVDFNNWKDWEDDSDEDMSNFDRFSEMMNNMGGDEDVDLPEVDGADDDSQDS
       :  :  ::::::.::.::: : . .... ....:......  .    : .:  :      
CCDS45 EDIKPVWLSVDFDNWRDWEGDEEMELAHVEHYAELLKKVSTKRPP--PAMDDLDFTTTVV
         140       150       160       170       180         190   

             160                                                   
pF1KB6 DDEKMPDLE                                                   
                                                                   
CCDS45 SCCPAELQTEGSNGKKEVLSGFQVVLEDTVLFPEGGGQPDDRGTINDISVLRVTRRGEQA
           200       210       220       230       240       250   

>>CCDS11447.1 AARSD1 gene_id:100885850|Hs108|chr17        (525 aa)
 initn: 384 init1: 272 opt: 367  Z-score: 439.0  bits: 89.2 E(32554): 4e-18
Smith-Waterman score: 367; 40.3% identity (72.1% similar) in 129 aa overlap (17-145:1-126)

               10        20        30        40        50        60
pF1KB6 MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCID
                       .::::::: ::.: .:  ...:::  ..:. .  :::...  ..
CCDS11                 MEFCVEDSTDVHVLIEDHRIVFSC-KNADGVELYNEIEFYAKVN
                               10        20         30        40   

               70        80        90       100       110       120
pF1KB6 PNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNF
        .::. ::..::: : .:: .   .:::::::  :  ::::::.::.::: : . .... 
CCDS11 SKDSQDKRSSRSITCFVRKWKEKVAWPRLTKEDIKPVWLSVDFDNWRDWEGDEEMELAHV
            50        60        70        80        90       100   

              130       140       150       160                    
pF1KB6 DRFSEMMNNMGGDEDVDLPEVDGADDDSQDSDDEKMPDLE                    
       ....:......  .    : .:  :                                   
CCDS11 EHYAELLKKVSTKRPP--PAMDDLDFTTTVVSCCPAELQTEGSNGKKEVLSGFQVVLEDT
           110         120       130       140       150       160 

>>CCDS45692.1 PTGES3L gene_id:100885848|Hs108|chr17       (161 aa)
 initn: 324 init1: 277 opt: 317  Z-score: 387.2  bits: 77.9 E(32554): 3e-15
Smith-Waterman score: 317; 39.1% identity (72.7% similar) in 110 aa overlap (44-153:50-157)

            20        30        40        50        60        70   
pF1KB6 YVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDPNDSKHKRTDRSI
                                     .:. .  :::...  .. .::. ::..:::
CCDS45 GRPQDLKIAAPAWNSKCHPGAGAAMARCKNADGVELYNEIEFYAKVNSKDSQDKRSSRSI
      20        30        40        50        60        70         

            80        90       100       110       120       130   
pF1KB6 LCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNFDRFSEMMNNMGGD
        : .:: .   .:::::::  :  ::::::.::.::: : . .... ....:......  
CCDS45 TCFVRKWKEKVAWPRLTKEDIKPVWLSVDFDNWRDWEGDEEMELAHVEHYAELLKKVSTK
      80        90       100       110       120       130         

           140       150       160
pF1KB6 EDVDLPEVDGADDDSQDSDDEKMPDLE
       .    : .:  ::::...::       
CCDS45 RPP--PAMDDLDDDSDSADDATSN   
     140         150       160    




160 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 00:02:47 2016 done: Sat Nov  5 00:02:47 2016
 Total Scan time:  1.630 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]
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