Result of FASTA (ccds) for pF1KE0481
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0481, 419 aa
  1>>>pF1KE0481 419 - 419 aa - 419 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5097+/-0.00102; mu= 11.0127+/- 0.061
 mean_var=120.6706+/-26.285, 0's: 0 Z-trim(106.3): 131  B-trim: 471 in 1/51
 Lambda= 0.116754
 statistics sampled from 8786 (8932) to 8786 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.643), E-opt: 0.2 (0.274), width:  16
 Scan time:  2.990

The best scores are:                                      opt bits E(32554)
CCDS54275.1 PSG1 gene_id:5669|Hs108|chr19          ( 419) 2827 487.8 8.1e-138
CCDS12612.1 PSG1 gene_id:5669|Hs108|chr19          ( 426) 2791 481.8 5.5e-136
CCDS59392.1 PSG1 gene_id:5669|Hs108|chr19          ( 417) 2786 480.9 9.6e-136
CCDS74380.1 PSG1 gene_id:5669|Hs108|chr19          ( 428) 2786 480.9 9.8e-136
CCDS46091.1 PSG8 gene_id:440533|Hs108|chr19        ( 419) 2624 453.6 1.6e-127
CCDS33037.1 PSG8 gene_id:440533|Hs108|chr19        ( 426) 2594 448.6 5.3e-126
CCDS12611.1 PSG3 gene_id:5671|Hs108|chr19          ( 428) 2546 440.5 1.5e-123
CCDS46093.1 PSG4 gene_id:5672|Hs108|chr19          ( 419) 2489 430.9 1.1e-120
CCDS12613.1 PSG6 gene_id:5675|Hs108|chr19          ( 435) 2435 421.8 6.2e-118
CCDS33038.1 PSG6 gene_id:5675|Hs108|chr19          ( 424) 2428 420.6 1.4e-117
CCDS12618.1 PSG9 gene_id:5678|Hs108|chr19          ( 426) 2350 407.5 1.3e-113
CCDS46090.1 PSG8 gene_id:440533|Hs108|chr19        ( 297) 1772 310.0 1.9e-84
CCDS77310.1 PSG7 gene_id:5676|Hs108|chr19          ( 297) 1711 299.7 2.4e-81
CCDS12616.1 PSG2 gene_id:5670|Hs108|chr19          ( 335) 1463 258.0 9.9e-69
CCDS12614.2 PSG11 gene_id:5680|Hs108|chr19         ( 335) 1455 256.6 2.5e-68
CCDS33039.1 PSG4 gene_id:5672|Hs108|chr19          ( 326) 1417 250.2 2.1e-66
CCDS77314.1 PSG9 gene_id:5678|Hs108|chr19          ( 333) 1369 242.2 5.7e-64
CCDS82360.1 PSG1 gene_id:5669|Hs108|chr19          ( 326) 1314 232.9 3.5e-61
CCDS12617.1 PSG5 gene_id:5673|Hs108|chr19          ( 335) 1194 212.7 4.3e-55
CCDS62695.1 PSG4 gene_id:5672|Hs108|chr19          ( 326) 1181 210.5 1.9e-54
CCDS77312.1 PSG9 gene_id:5678|Hs108|chr19          ( 333) 1132 202.2   6e-52
CCDS77311.1 PSG9 gene_id:5678|Hs108|chr19          ( 240)  826 150.6 1.5e-36
CCDS12584.1 CEACAM5 gene_id:1048|Hs108|chr19       ( 702)  775 142.4 1.3e-33
CCDS12615.2 PSG11 gene_id:5680|Hs108|chr19         ( 213)  737 135.6 4.6e-32
CCDS12610.1 CEACAM8 gene_id:1088|Hs108|chr19       ( 349)  734 135.2 9.4e-32
CCDS54272.1 CEACAM1 gene_id:634|Hs108|chr19        ( 368)  727 134.1 2.2e-31
CCDS54273.1 CEACAM1 gene_id:634|Hs108|chr19        ( 430)  727 134.1 2.5e-31
CCDS77302.1 CEACAM5 gene_id:1048|Hs108|chr19       ( 701)  722 133.4 6.5e-31
CCDS54274.1 CEACAM1 gene_id:634|Hs108|chr19        ( 461)  714 131.9 1.2e-30
CCDS46089.1 CEACAM1 gene_id:634|Hs108|chr19        ( 464)  714 131.9 1.2e-30
CCDS12609.1 CEACAM1 gene_id:634|Hs108|chr19        ( 526)  714 132.0 1.3e-30
CCDS12585.1 CEACAM6 gene_id:4680|Hs108|chr19       ( 344)  698 129.1 6.2e-30
CCDS46087.1 CEACAM21 gene_id:90273|Hs108|chr19     ( 292)  570 107.5 1.7e-23
CCDS46086.1 CEACAM21 gene_id:90273|Hs108|chr19     ( 293)  570 107.5 1.7e-23
CCDS62685.1 CEACAM3 gene_id:1084|Hs108|chr19       ( 212)  515 98.2 8.2e-21
CCDS12586.2 CEACAM3 gene_id:1084|Hs108|chr19       ( 252)  515 98.2 9.3e-21
CCDS54278.1 CEACAM16 gene_id:388551|Hs108|chr19    ( 425)  453 88.0 1.9e-17
CCDS74392.1 CEACAM20 gene_id:125931|Hs108|chr19    ( 584)  432 84.5 2.9e-16
CCDS74393.1 CEACAM20 gene_id:125931|Hs108|chr19    ( 596)  432 84.5 2.9e-16
CCDS33033.1 CEACAM4 gene_id:1089|Hs108|chr19       ( 244)  425 83.0 3.3e-16
CCDS12583.1 CEACAM7 gene_id:1087|Hs108|chr19       ( 265)  399 78.7 7.4e-15


>>CCDS54275.1 PSG1 gene_id:5669|Hs108|chr19               (419 aa)
 initn: 2827 init1: 2827 opt: 2827  Z-score: 2587.8  bits: 487.8 E(32554): 8.1e-138
Smith-Waterman score: 2827; 100.0% identity (100.0% similar) in 419 aa overlap (1-419:1-419)

               10        20        30        40        50        60
pF1KE0 MGTLSAPPCTQRIKWKGLLLTASLLNFWNLPTTAQVTIEAEPTKVSEGKDVLLLVHNLPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MGTLSAPPCTQRIKWKGLLLTASLLNFWNLPTTAQVTIEAEPTKVSEGKDVLLLVHNLPQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 NLTGYIWYKGQMRDLYHYITSYVVDGEIIIYGPAYSGRETAYSNASLLIQNVTREDAGSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 NLTGYIWYKGQMRDLYHYITSYVVDGEIIIYGPAYSGRETAYSNASLLIQNVTREDAGSY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 TLHIIKGDDGTRGVTGRFTFTLHLETPKPSISSSNLNPRETMEAVSLTCDPETPDASYLW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 TLHIIKGDDGTRGVTGRFTFTLHLETPKPSISSSNLNPRETMEAVSLTCDPETPDASYLW
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 WMNGQSLPMTHSLKLSETNRTLFLLGVTKYTAGPYECEIRNPVSASRSDPVTLNLLPKLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 WMNGQSLPMTHSLKLSETNRTLFLLGVTKYTAGPYECEIRNPVSASRSDPVTLNLLPKLP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 KPYITINNLNPRENKDVLNFTCEPKSENYTYIWWLNGQSLPVSPRVKRPIENRILILPSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 KPYITINNLNPRENKDVLNFTCEPKSENYTYIWWLNGQSLPVSPRVKRPIENRILILPSV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 TRNETGPYQCEIRDRYGGIRSDPVTLNVLYGPDLPRIYPSFTYYRSGEVLYLSCSADSNP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 TRNETGPYQCEIRDRYGGIRSDPVTLNVLYGPDLPRIYPSFTYYRSGEVLYLSCSADSNP
              310       320       330       340       350       360

              370       380       390       400       410         
pF1KE0 PAQYSWTINEKFQLPGQKLFIRHITTKHSGLYVCSVRNSATGKESSKSMTVEVSDWTVP
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 PAQYSWTINEKFQLPGQKLFIRHITTKHSGLYVCSVRNSATGKESSKSMTVEVSDWTVP
              370       380       390       400       410         

>>CCDS12612.1 PSG1 gene_id:5669|Hs108|chr19               (426 aa)
 initn: 2784 init1: 2784 opt: 2791  Z-score: 2554.9  bits: 481.8 E(32554): 5.5e-136
Smith-Waterman score: 2791; 99.0% identity (99.3% similar) in 419 aa overlap (1-419:1-419)

               10        20        30        40        50        60
pF1KE0 MGTLSAPPCTQRIKWKGLLLTASLLNFWNLPTTAQVTIEAEPTKVSEGKDVLLLVHNLPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MGTLSAPPCTQRIKWKGLLLTASLLNFWNLPTTAQVTIEAEPTKVSEGKDVLLLVHNLPQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 NLTGYIWYKGQMRDLYHYITSYVVDGEIIIYGPAYSGRETAYSNASLLIQNVTREDAGSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 NLTGYIWYKGQMRDLYHYITSYVVDGEIIIYGPAYSGRETAYSNASLLIQNVTREDAGSY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 TLHIIKGDDGTRGVTGRFTFTLHLETPKPSISSSNLNPRETMEAVSLTCDPETPDASYLW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 TLHIIKGDDGTRGVTGRFTFTLHLETPKPSISSSNLNPRETMEAVSLTCDPETPDASYLW
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 WMNGQSLPMTHSLKLSETNRTLFLLGVTKYTAGPYECEIRNPVSASRSDPVTLNLLPKLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 WMNGQSLPMTHSLKLSETNRTLFLLGVTKYTAGPYECEIRNPVSASRSDPVTLNLLPKLP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 KPYITINNLNPRENKDVLNFTCEPKSENYTYIWWLNGQSLPVSPRVKRPIENRILILPSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 KPYITINNLNPRENKDVLNFTCEPKSENYTYIWWLNGQSLPVSPRVKRPIENRILILPSV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 TRNETGPYQCEIRDRYGGIRSDPVTLNVLYGPDLPRIYPSFTYYRSGEVLYLSCSADSNP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 TRNETGPYQCEIRDRYGGIRSDPVTLNVLYGPDLPRIYPSFTYYRSGEVLYLSCSADSNP
              310       320       330       340       350       360

              370       380       390       400       410          
pF1KE0 PAQYSWTINEKFQLPGQKLFIRHITTKHSGLYVCSVRNSATGKESSKSMTVEVSDWTVP 
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::   .: 
CCDS12 PAQYSWTINEKFQLPGQKLFIRHITTKHSGLYVCSVRNSATGKESSKSMTVEVSGKWIPA
              370       380       390       400       410       420

CCDS12 SLAIGF
             

>>CCDS59392.1 PSG1 gene_id:5669|Hs108|chr19               (417 aa)
 initn: 3105 init1: 2786 opt: 2786  Z-score: 2550.5  bits: 480.9 E(32554): 9.6e-136
Smith-Waterman score: 2786; 99.8% identity (100.0% similar) in 415 aa overlap (1-415:1-415)

               10        20        30        40        50        60
pF1KE0 MGTLSAPPCTQRIKWKGLLLTASLLNFWNLPTTAQVTIEAEPTKVSEGKDVLLLVHNLPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MGTLSAPPCTQRIKWKGLLLTASLLNFWNLPTTAQVTIEAEPTKVSEGKDVLLLVHNLPQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 NLTGYIWYKGQMRDLYHYITSYVVDGEIIIYGPAYSGRETAYSNASLLIQNVTREDAGSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 NLTGYIWYKGQMRDLYHYITSYVVDGEIIIYGPAYSGRETAYSNASLLIQNVTREDAGSY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 TLHIIKGDDGTRGVTGRFTFTLHLETPKPSISSSNLNPRETMEAVSLTCDPETPDASYLW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 TLHIIKGDDGTRGVTGRFTFTLHLETPKPSISSSNLNPRETMEAVSLTCDPETPDASYLW
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 WMNGQSLPMTHSLKLSETNRTLFLLGVTKYTAGPYECEIRNPVSASRSDPVTLNLLPKLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 WMNGQSLPMTHSLKLSETNRTLFLLGVTKYTAGPYECEIRNPVSASRSDPVTLNLLPKLP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 KPYITINNLNPRENKDVLNFTCEPKSENYTYIWWLNGQSLPVSPRVKRPIENRILILPSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 KPYITINNLNPRENKDVLNFTCEPKSENYTYIWWLNGQSLPVSPRVKRPIENRILILPSV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 TRNETGPYQCEIRDRYGGIRSDPVTLNVLYGPDLPRIYPSFTYYRSGEVLYLSCSADSNP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 TRNETGPYQCEIRDRYGGIRSDPVTLNVLYGPDLPRIYPSFTYYRSGEVLYLSCSADSNP
              310       320       330       340       350       360

              370       380       390       400       410         
pF1KE0 PAQYSWTINEKFQLPGQKLFIRHITTKHSGLYVCSVRNSATGKESSKSMTVEVSDWTVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::.    
CCDS59 PAQYSWTINEKFQLPGQKLFIRHITTKHSGLYVCSVRNSATGKESSKSMTVEVSEAL  
              370       380       390       400       410         

>>CCDS74380.1 PSG1 gene_id:5669|Hs108|chr19               (428 aa)
 initn: 3105 init1: 2786 opt: 2786  Z-score: 2550.3  bits: 480.9 E(32554): 9.8e-136
Smith-Waterman score: 2786; 99.3% identity (99.8% similar) in 417 aa overlap (1-417:1-417)

               10        20        30        40        50        60
pF1KE0 MGTLSAPPCTQRIKWKGLLLTASLLNFWNLPTTAQVTIEAEPTKVSEGKDVLLLVHNLPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MGTLSAPPCTQRIKWKGLLLTASLLNFWNLPTTAQVTIEAEPTKVSEGKDVLLLVHNLPQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 NLTGYIWYKGQMRDLYHYITSYVVDGEIIIYGPAYSGRETAYSNASLLIQNVTREDAGSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 NLTGYIWYKGQMRDLYHYITSYVVDGEIIIYGPAYSGRETAYSNASLLIQNVTREDAGSY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 TLHIIKGDDGTRGVTGRFTFTLHLETPKPSISSSNLNPRETMEAVSLTCDPETPDASYLW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 TLHIIKGDDGTRGVTGRFTFTLHLETPKPSISSSNLNPRETMEAVSLTCDPETPDASYLW
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 WMNGQSLPMTHSLKLSETNRTLFLLGVTKYTAGPYECEIRNPVSASRSDPVTLNLLPKLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 WMNGQSLPMTHSLKLSETNRTLFLLGVTKYTAGPYECEIRNPVSASRSDPVTLNLLPKLP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 KPYITINNLNPRENKDVLNFTCEPKSENYTYIWWLNGQSLPVSPRVKRPIENRILILPSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 KPYITINNLNPRENKDVLNFTCEPKSENYTYIWWLNGQSLPVSPRVKRPIENRILILPSV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 TRNETGPYQCEIRDRYGGIRSDPVTLNVLYGPDLPRIYPSFTYYRSGEVLYLSCSADSNP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 TRNETGPYQCEIRDRYGGIRSDPVTLNVLYGPDLPRIYPSFTYYRSGEVLYLSCSADSNP
              310       320       330       340       350       360

              370       380       390       400       410          
pF1KE0 PAQYSWTINEKFQLPGQKLFIRHITTKHSGLYVCSVRNSATGKESSKSMTVEVSDWTVP 
       :::::::::::::::::::::::::::::::::::::::::::::::::::::: ..   
CCDS74 PAQYSWTINEKFQLPGQKLFIRHITTKHSGLYVCSVRNSATGKESSKSMTVEVSAYSSSI
              370       380       390       400       410       420

CCDS74 NYTSGNRN
               

>>CCDS46091.1 PSG8 gene_id:440533|Hs108|chr19             (419 aa)
 initn: 2948 init1: 2624 opt: 2624  Z-score: 2403.0  bits: 453.6 E(32554): 1.6e-127
Smith-Waterman score: 2624; 92.8% identity (96.9% similar) in 419 aa overlap (1-419:1-419)

               10        20        30        40        50        60
pF1KE0 MGTLSAPPCTQRIKWKGLLLTASLLNFWNLPTTAQVTIEAEPTKVSEGKDVLLLVHNLPQ
       :: :::::::::: ::::::::::::::: ::::::::::.:::::::::::::::::::
CCDS46 MGLLSAPPCTQRITWKGLLLTASLLNFWNPPTTAQVTIEAQPTKVSEGKDVLLLVHNLPQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 NLTGYIWYKGQMRDLYHYITSYVVDGEIIIYGPAYSGRETAYSNASLLIQNVTREDAGSY
       :::::::::::.::::::::::::::.::::::::::::: ::::::::::::.::::::
CCDS46 NLTGYIWYKGQIRDLYHYITSYVVDGQIIIYGPAYSGRETIYSNASLLIQNVTQEDAGSY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 TLHIIKGDDGTRGVTGRFTFTLHLETPKPSISSSNLNPRETMEAVSLTCDPETPDASYLW
       ::::: : : .:::::.:::::.:::::::::::.:::::.:::::::::::::::::::
CCDS46 TLHIIMGGDENRGVTGHFTFTLYLETPKPSISSSKLNPREAMEAVSLTCDPETPDASYLW
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 WMNGQSLPMTHSLKLSETNRTLFLLGVTKYTAGPYECEIRNPVSASRSDPVTLNLLPKLP
       :::::::::.: :.:::::::::::::::::::::::::::::::::::: :::::::::
CCDS46 WMNGQSLPMSHRLQLSETNRTLFLLGVTKYTAGPYECEIRNPVSASRSDPFTLNLLPKLP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 KPYITINNLNPRENKDVLNFTCEPKSENYTYIWWLNGQSLPVSPRVKRPIENRILILPSV
       :::::::::.::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 KPYITINNLKPRENKDVLNFTCEPKSENYTYIWWLNGQSLPVSPRVKRPIENRILILPSV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 TRNETGPYQCEIRDRYGGIRSDPVTLNVLYGPDLPRIYPSFTYYRSGEVLYLSCSADSNP
       ::::::::::::::.:::::: ::::::::::::::::::::::::::::::::::::::
CCDS46 TRNETGPYQCEIRDQYGGIRSYPVTLNVLYGPDLPRIYPSFTYYRSGEVLYLSCSADSNP
              310       320       330       340       350       360

              370       380       390       400       410         
pF1KE0 PAQYSWTINEKFQLPGQKLFIRHITTKHSGLYVCSVRNSATGKESSKSMTVEVSDWTVP
       ::::::::: :::: :::::: .:::::::::.::::::::::::::::::.:::::.:
CCDS46 PAQYSWTINGKFQLSGQKLFIPQITTKHSGLYACSVRNSATGKESSKSMTVKVSDWTLP
              370       380       390       400       410         

>>CCDS33037.1 PSG8 gene_id:440533|Hs108|chr19             (426 aa)
 initn: 2585 init1: 2585 opt: 2594  Z-score: 2375.6  bits: 448.6 E(32554): 5.3e-126
Smith-Waterman score: 2594; 92.1% identity (96.2% similar) in 419 aa overlap (1-419:1-419)

               10        20        30        40        50        60
pF1KE0 MGTLSAPPCTQRIKWKGLLLTASLLNFWNLPTTAQVTIEAEPTKVSEGKDVLLLVHNLPQ
       :: :::::::::: ::::::::::::::: ::::::::::.:::::::::::::::::::
CCDS33 MGLLSAPPCTQRITWKGLLLTASLLNFWNPPTTAQVTIEAQPTKVSEGKDVLLLVHNLPQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 NLTGYIWYKGQMRDLYHYITSYVVDGEIIIYGPAYSGRETAYSNASLLIQNVTREDAGSY
       :::::::::::.::::::::::::::.::::::::::::: ::::::::::::.::::::
CCDS33 NLTGYIWYKGQIRDLYHYITSYVVDGQIIIYGPAYSGRETIYSNASLLIQNVTQEDAGSY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 TLHIIKGDDGTRGVTGRFTFTLHLETPKPSISSSNLNPRETMEAVSLTCDPETPDASYLW
       ::::: : : .:::::.:::::.:::::::::::.:::::.:::::::::::::::::::
CCDS33 TLHIIMGGDENRGVTGHFTFTLYLETPKPSISSSKLNPREAMEAVSLTCDPETPDASYLW
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 WMNGQSLPMTHSLKLSETNRTLFLLGVTKYTAGPYECEIRNPVSASRSDPVTLNLLPKLP
       :::::::::.: :.:::::::::::::::::::::::::::::::::::: :::::::::
CCDS33 WMNGQSLPMSHRLQLSETNRTLFLLGVTKYTAGPYECEIRNPVSASRSDPFTLNLLPKLP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 KPYITINNLNPRENKDVLNFTCEPKSENYTYIWWLNGQSLPVSPRVKRPIENRILILPSV
       :::::::::.::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 KPYITINNLKPRENKDVLNFTCEPKSENYTYIWWLNGQSLPVSPRVKRPIENRILILPSV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 TRNETGPYQCEIRDRYGGIRSDPVTLNVLYGPDLPRIYPSFTYYRSGEVLYLSCSADSNP
       ::::::::::::::.:::::: ::::::::::::::::::::::::::::::::::::::
CCDS33 TRNETGPYQCEIRDQYGGIRSYPVTLNVLYGPDLPRIYPSFTYYRSGEVLYLSCSADSNP
              310       320       330       340       350       360

              370       380       390       400       410          
pF1KE0 PAQYSWTINEKFQLPGQKLFIRHITTKHSGLYVCSVRNSATGKESSKSMTVEVSDWTVP 
       ::::::::: :::: :::::: .:::::::::.::::::::::::::::::.::   .: 
CCDS33 PAQYSWTINGKFQLSGQKLFIPQITTKHSGLYACSVRNSATGKESSKSMTVKVSGKRIPV
              370       380       390       400       410       420

CCDS33 SLAIGI
             

>>CCDS12611.1 PSG3 gene_id:5671|Hs108|chr19               (428 aa)
 initn: 2546 init1: 2546 opt: 2546  Z-score: 2331.9  bits: 440.5 E(32554): 1.5e-123
Smith-Waterman score: 2546; 91.5% identity (96.1% similar) in 414 aa overlap (1-414:1-414)

               10        20        30        40        50        60
pF1KE0 MGTLSAPPCTQRIKWKGLLLTASLLNFWNLPTTAQVTIEAEPTKVSEGKDVLLLVHNLPQ
       :: :::::::::: :::::::: :::::::::::::::::::::::.:::::::::::::
CCDS12 MGPLSAPPCTQRITWKGLLLTALLLNFWNLPTTAQVTIEAEPTKVSKGKDVLLLVHNLPQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 NLTGYIWYKGQMRDLYHYITSYVVDGEIIIYGPAYSGRETAYSNASLLIQNVTREDAGSY
       ::.:::::::::.:::::::::::::.:::::::::::::.:::::::::::::::::::
CCDS12 NLAGYIWYKGQMKDLYHYITSYVVDGQIIIYGPAYSGRETVYSNASLLIQNVTREDAGSY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 TLHIIKGDDGTRGVTGRFTFTLHLETPKPSISSSNLNPRETMEAVSLTCDPETPDASYLW
       ::::.:  ::::: ::.:::::.::::::::::::: ::: :::::::::::::::::::
CCDS12 TLHIVKRGDGTRGETGHFTFTLYLETPKPSISSSNLYPREDMEAVSLTCDPETPDASYLW
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 WMNGQSLPMTHSLKLSETNRTLFLLGVTKYTAGPYECEIRNPVSASRSDPVTLNLLPKLP
       :::::::::::::.::...:::::.:::::::::::::::::::::::::::::::::::
CCDS12 WMNGQSLPMTHSLQLSKNKRTLFLFGVTKYTAGPYECEIRNPVSASRSDPVTLNLLPKLP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 KPYITINNLNPRENKDVLNFTCEPKSENYTYIWWLNGQSLPVSPRVKRPIENRILILPSV
       :::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::
CCDS12 KPYITINNLNPRENKDVLAFTCEPKSENYTYIWWLNGQSLPVSPRVKRPIENRILILPSV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 TRNETGPYQCEIRDRYGGIRSDPVTLNVLYGPDLPRIYPSFTYYRSGEVLYLSCSADSNP
       ::::::::::::.:::::::: ::::::::::::::::::::::.::: ::::: :::::
CCDS12 TRNETGPYQCEIQDRYGGIRSYPVTLNVLYGPDLPRIYPSFTYYHSGENLYLSCFADSNP
              310       320       330       340       350       360

              370       380       390       400       410          
pF1KE0 PAQYSWTINEKFQLPGQKLFIRHITTKHSGLYVCSVRNSATGKESSKSMTVEVSDWTVP 
       ::.:::::: :::: :::::: .:::::::::.::::::::: ::::::::.::      
CCDS12 PAEYSWTINGKFQLSGQKLFIPQITTKHSGLYACSVRNSATGMESSKSMTVKVSAPSGTG
              370       380       390       400       410       420

CCDS12 HLPGLNPL
               

>>CCDS46093.1 PSG4 gene_id:5672|Hs108|chr19               (419 aa)
 initn: 2813 init1: 2489 opt: 2489  Z-score: 2280.1  bits: 430.9 E(32554): 1.1e-120
Smith-Waterman score: 2489; 88.5% identity (93.6% similar) in 419 aa overlap (1-419:1-419)

               10        20        30        40        50        60
pF1KE0 MGTLSAPPCTQRIKWKGLLLTASLLNFWNLPTTAQVTIEAEPTKVSEGKDVLLLVHNLPQ
       :: :::::::::: :::.::::::::::: ::::::::::.: :::::::::::::::::
CCDS46 MGPLSAPPCTQRITWKGVLLTASLLNFWNPPTTAQVTIEAQPPKVSEGKDVLLLVHNLPQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 NLTGYIWYKGQMRDLYHYITSYVVDGEIIIYGPAYSGRETAYSNASLLIQNVTREDAGSY
       ::.:::::::::  ::::::::::::. ::::::::::: .::::::::::::.::::::
CCDS46 NLAGYIWYKGQMTYLYHYITSYVVDGQRIIYGPAYSGRERVYSNASLLIQNVTQEDAGSY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 TLHIIKGDDGTRGVTGRFTFTLHLETPKPSISSSNLNPRETMEAVSLTCDPETPDASYLW
       ::::::  ::: ::::.:::::::::::::::::::::::.:::: ::::: :: ::: :
CCDS46 TLHIIKRRDGTGGVTGHFTFTLHLETPKPSISSSNLNPREAMEAVILTCDPATPAASYQW
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 WMNGQSLPMTHSLKLSETNRTLFLLGVTKYTAGPYECEIRNPVSASRSDPVTLNLLPKLP
       ::::::::::: :.::.::::::..::::: :::::::::::::::::::::::::::: 
CCDS46 WMNGQSLPMTHRLQLSKTNRTLFIFGVTKYIAGPYECEIRNPVSASRSDPVTLNLLPKLS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 KPYITINNLNPRENKDVLNFTCEPKSENYTYIWWLNGQSLPVSPRVKRPIENRILILPSV
       ::::::::::::::::::.:::::::.:::::::::::::::::::::::::::::::.:
CCDS46 KPYITINNLNPRENKDVLTFTCEPKSKNYTYIWWLNGQSLPVSPRVKRPIENRILILPNV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 TRNETGPYQCEIRDRYGGIRSDPVTLNVLYGPDLPRIYPSFTYYRSGEVLYLSCSADSNP
       ::::::::::::::::::::::::::::::::::: :::::::::::: ::::: :.:::
CCDS46 TRNETGPYQCEIRDRYGGIRSDPVTLNVLYGPDLPSIYPSFTYYRSGENLYLSCFAESNP
              310       320       330       340       350       360

              370       380       390       400       410         
pF1KE0 PAQYSWTINEKFQLPGQKLFIRHITTKHSGLYVCSVRNSATGKESSKSMTVEVSDWTVP
        :::::::: :::: :::: : .:::::::::.:::::::::::::::.::.:::: .:
CCDS46 RAQYSWTINGKFQLSGQKLSIPQITTKHSGLYACSVRNSATGKESSKSITVKVSDWILP
              370       380       390       400       410         

>>CCDS12613.1 PSG6 gene_id:5675|Hs108|chr19               (435 aa)
 initn: 2751 init1: 1914 opt: 2435  Z-score: 2230.7  bits: 421.8 E(32554): 6.2e-118
Smith-Waterman score: 2435; 87.4% identity (92.8% similar) in 419 aa overlap (1-419:1-418)

               10        20        30        40        50        60
pF1KE0 MGTLSAPPCTQRIKWKGLLLTASLLNFWNLPTTAQVTIEAEPTKVSEGKDVLLLVHNLPQ
       :: ::::::::.: :::::::::::::::::::::: :::.: :::::::::::::::::
CCDS12 MGPLSAPPCTQHITWKGLLLTASLLNFWNLPTTAQVIIEAKPPKVSEGKDVLLLVHNLPQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 NLTGYIWYKGQMRDLYHYITSYVVDGEIIIYGPAYSGRETAYSNASLLIQNVTREDAGSY
       :::::::::::: ::::::::::: :.:: ::::::::::.::::::::::::.::::::
CCDS12 NLTGYIWYKGQMTDLYHYITSYVVHGQII-YGPAYSGRETVYSNASLLIQNVTQEDAGSY
               70        80         90       100       110         

              130       140       150       160       170       180
pF1KE0 TLHIIKGDDGTRGVTGRFTFTLHLETPKPSISSSNLNPRETMEAVSLTCDPETPDASYLW
       ::::::  ::: :::: :: ::. ::::::::::::::::.:::: : ::::::::::::
CCDS12 TLHIIKRGDGTGGVTGYFTVTLYSETPKPSISSSNLNPREVMEAVRLICDPETPDASYLW
     120       130       140       150       160       170         

              190       200       210       220       230       240
pF1KE0 WMNGQSLPMTHSLKLSETNRTLFLLGVTKYTAGPYECEIRNPVSASRSDPVTLNLLPKLP
        .:::.::::: :.::.:::::.:.::::: :::::::::::::::::::::::::::::
CCDS12 LLNGQNLPMTHRLQLSKTNRTLYLFGVTKYIAGPYECEIRNPVSASRSDPVTLNLLPKLP
     180       190       200       210       220       230         

              250       260       270       280       290       300
pF1KE0 KPYITINNLNPRENKDVLNFTCEPKSENYTYIWWLNGQSLPVSPRVKRPIENRILILPSV
        ::::::::::::.:::: :::::::.:::::::::::::::::::::::::::::::::
CCDS12 MPYITINNLNPREKKDVLAFTCEPKSRNYTYIWWLNGQSLPVSPRVKRPIENRILILPSV
     240       250       260       270       280       290         

              310       320       330       340       350       360
pF1KE0 TRNETGPYQCEIRDRYGGIRSDPVTLNVLYGPDLPRIYPSFTYYRSGEVLYLSCSADSNP
       :::::::::::::::::::::.:::::::::::::::::::::::::: : ::: :::::
CCDS12 TRNETGPYQCEIRDRYGGIRSNPVTLNVLYGPDLPRIYPSFTYYRSGENLDLSCFADSNP
     300       310       320       330       340       350         

              370       380       390       400       410          
pF1KE0 PAQYSWTINEKFQLPGQKLFIRHITTKHSGLYVCSVRNSATGKESSKSMTVEVSDWTVP 
       ::.:::::: :::: :::::: .:::.:::::.::::::::::: :::: :.::. . : 
CCDS12 PAEYSWTINGKFQLSGQKLFIPQITTNHSGLYACSVRNSATGKEISKSMIVKVSETASPQ
     360       370       380       390       400       410         

CCDS12 VTYAGPNTWFQEILLL
     420       430     

>>CCDS33038.1 PSG6 gene_id:5675|Hs108|chr19               (424 aa)
 initn: 1912 init1: 1912 opt: 2428  Z-score: 2224.5  bits: 420.6 E(32554): 1.4e-117
Smith-Waterman score: 2428; 88.2% identity (93.2% similar) in 414 aa overlap (1-414:1-413)

               10        20        30        40        50        60
pF1KE0 MGTLSAPPCTQRIKWKGLLLTASLLNFWNLPTTAQVTIEAEPTKVSEGKDVLLLVHNLPQ
       :: ::::::::.: :::::::::::::::::::::: :::.: :::::::::::::::::
CCDS33 MGPLSAPPCTQHITWKGLLLTASLLNFWNLPTTAQVIIEAKPPKVSEGKDVLLLVHNLPQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 NLTGYIWYKGQMRDLYHYITSYVVDGEIIIYGPAYSGRETAYSNASLLIQNVTREDAGSY
       :::::::::::: ::::::::::: :.:: ::::::::::.::::::::::::.::::::
CCDS33 NLTGYIWYKGQMTDLYHYITSYVVHGQII-YGPAYSGRETVYSNASLLIQNVTQEDAGSY
               70        80         90       100       110         

              130       140       150       160       170       180
pF1KE0 TLHIIKGDDGTRGVTGRFTFTLHLETPKPSISSSNLNPRETMEAVSLTCDPETPDASYLW
       ::::::  ::: :::: :: ::. ::::::::::::::::.:::: : ::::::::::::
CCDS33 TLHIIKRGDGTGGVTGYFTVTLYSETPKPSISSSNLNPREVMEAVRLICDPETPDASYLW
     120       130       140       150       160       170         

              190       200       210       220       230       240
pF1KE0 WMNGQSLPMTHSLKLSETNRTLFLLGVTKYTAGPYECEIRNPVSASRSDPVTLNLLPKLP
        .:::.::::: :.::.:::::.:.::::: :::::::::::::::::::::::::::::
CCDS33 LLNGQNLPMTHRLQLSKTNRTLYLFGVTKYIAGPYECEIRNPVSASRSDPVTLNLLPKLP
     180       190       200       210       220       230         

              250       260       270       280       290       300
pF1KE0 KPYITINNLNPRENKDVLNFTCEPKSENYTYIWWLNGQSLPVSPRVKRPIENRILILPSV
        ::::::::::::.:::: :::::::.:::::::::::::::::::::::::::::::::
CCDS33 MPYITINNLNPREKKDVLAFTCEPKSRNYTYIWWLNGQSLPVSPRVKRPIENRILILPSV
     240       250       260       270       280       290         

              310       320       330       340       350       360
pF1KE0 TRNETGPYQCEIRDRYGGIRSDPVTLNVLYGPDLPRIYPSFTYYRSGEVLYLSCSADSNP
       :::::::::::::::::::::.:::::::::::::::::::::::::: : ::: :::::
CCDS33 TRNETGPYQCEIRDRYGGIRSNPVTLNVLYGPDLPRIYPSFTYYRSGENLDLSCFADSNP
     300       310       320       330       340       350         

              370       380       390       400       410          
pF1KE0 PAQYSWTINEKFQLPGQKLFIRHITTKHSGLYVCSVRNSATGKESSKSMTVEVSDWTVP 
       ::.:::::: :::: :::::: .:::.:::::.::::::::::: :::: :.::      
CCDS33 PAEYSWTINGKFQLSGQKLFIPQITTNHSGLYACSVRNSATGKEISKSMIVKVSGPCHGN
     360       370       380       390       400       410         

CCDS33 QTESH
     420    




419 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 05:14:08 2016 done: Thu Nov  3 05:14:09 2016
 Total Scan time:  2.990 Total Display time:  0.070

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com