GENSCAN 1.0	Date run:  4-Nov-116	Time: 22:15:10

Sequence gi568815584r:34985593_35221959 : 236367 bp : 40.64% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +  11118  11195   78  2  0   85   87    58 0.949   6.51
 1.02 Intr +  13966  14057   92  0  2  114   97    95 0.894  10.87
 1.03 Intr +  25917  26067  151  0  1   50   92   166 0.825  12.44
 1.04 Intr +  27754  27902  149  0  2   44   85   139 0.803   7.31
 1.05 Intr +  28210  28310  101  1  2  108   76    46 0.963   4.23
 1.06 Intr +  29152  29238   87  2  0  113   31   113 0.724   7.12
 1.07 Intr +  33399  33482   84  1  0   26  116    53 0.250   0.77
 1.08 Intr +  37318  37488  171  2  0   44  116   134 0.944  10.79
 1.09 Intr +  48606  48751  146  1  2   90   22    88 0.001   1.48
 1.10 Intr +  60416  60538  123  1  0   27   86   105 0.008   4.06
 1.11 Intr +  60836  61036  201  1  0   37   96   206 0.008  14.86
 1.12 Intr +  67686  67859  174  2  0   28   94   186 0.039  12.41
 1.13 Intr +  76224  76314   91  2  1   46   39   106 0.021   0.15
 1.14 Intr +  93335  93432   98  0  2   70   69   161 0.997  11.21
 1.15 Term +  95430  95636  207  2  0   92   38   248 0.977  16.56
 1.16 PlyA +  96113  96118    6                               1.05

 2.08 PlyA -  96320  96315    6                               1.05
 2.07 Term - 100186  99998  189  1  0  112   39   203 0.997  14.27
 2.06 Intr - 105615 105478  138  0  0  104  110    44 0.992   7.94
 2.05 Intr - 109592 109456  137  0  2   82   22   119 0.959   4.07
 2.04 Intr - 113792 113660  133  2  1  109   98    16 0.524   4.00
 2.03 Intr - 125037 124933  105  0  0   40  110    83 0.908   5.19
 2.02 Intr - 131145 131018  128  1  2   72  110    46 0.608   4.68
 2.01 Init - 131358 131322   37  0  1   57   34    53 0.182  -2.98
 2.00 Prom - 134242 134203   40                              -6.75

 3.00 Prom + 135943 135982   40                              -7.55
 3.01 Init + 136598 136690   93  1  0   59   13   105 0.080   0.53
 3.02 Intr + 136891 137043  153  0  0   66   84   102 0.095   6.95
 3.03 Intr + 137105 137175   71  1  2   44   72    86 0.050  -0.34
 3.04 Intr + 137219 137318  100  2  1   56   94    84 0.093   4.99
 3.05 Intr + 137360 137517  158  1  2  100   56    65 0.068   2.39
 3.06 Intr + 137683 138639  957  1  0   32   76   393 0.067  21.75
 3.07 Intr + 141887 142019  133  2  1   32  109   154 0.998  11.63
 3.08 Intr + 150418 150666  249  0  0    1   18   254 0.318   6.41
 3.09 Intr + 154666 154773  108  0  0   75   96    40 0.280   3.06
 3.10 Intr + 173067 173162   96  2  0   71   42    78 0.024   0.79
 3.11 Term + 176492 176515   24  1  0  135   32    18 0.046  -1.85
 3.12 PlyA + 176816 176821    6                               1.05

 4.03 PlyA - 176904 176899    6                               1.05
 4.02 Term - 191394 190019 1376  1  2   17   42   398 0.070  18.59
 4.01 Init - 193981 193558  424  1  1   95   77   197 0.208  15.85
 4.00 Prom - 197530 197491   40                              -3.55

 5.04 PlyA - 198706 198701    6                               1.05
 5.03 Term - 214470 214323  148  2  1  120   38    29 0.245  -2.51
 5.02 Intr - 221735 221570  166  0  1  106   99    60 0.577   7.00
 5.01 Init - 233727 233547  181  0  1   96   54   125 0.338   7.30

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term -  54271  54177   95  2  2   85   49    80 0.864   0.81
S.002 Intr -  61025  60888  138  0  0   71  119   228 0.916  23.71


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815584r:34985593_35221959|GENSCAN_predicted_peptide_1|650_aa
MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVNYTE
MDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASI
GQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPF
KTQPFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHDFMSKGNEQESMARLKKLMTI
MDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGIK
GLFKGNSPPPGCFHRLVLSVAFPGAQCKQLVDLPFWRLEDGGPFLTAPLSSAPPLKYNDT
AVFILQVQKPRSCGVTAPDAAGDGLRRGRDARLQPGSASDWAGRPRMEVGLPAITLFLTS
ASSPVVATTMDQEPVGGVERGEAVAASGAAAAAAFGESAGQMSNERGFENVELGVIGKKK
KVPRRVIHFVSGETMEEYSTDEDEVDGLEKKDVLPTVDPNLPLLPYELGKGDQGPGVLSG
AMLKVEPPFLCDFLGEKIASVLGISTPKYQYAIDEYYRMKKEEEEEEEENRMSEEAEKQY
QQNKLQTDSIVQTDQPETVISSSFVNVNFEMEGDSEVIMESKQNPVSVPP

>gi568815584r:34985593_35221959|GENSCAN_predicted_CDS_1|1953_bp
atggttctagcagaccttggaagaaaaataacatcagcattacgctcgttgagcaatgcc
accattatcaatgaagaggtattgaatgctatgctaaaagaagtctgtaccgctttgttg
gaagcagatgttaatattaaactagtgaagcaactaagagaaaatgttaactatacagaa
atggatcctgtcatcattgcttctgaaggagtagagaaatttaaaaatgaaaattttgaa
attattattgttgatacaagtggccgccacaaacaagaagactctttgtttgaagaaatg
cttcaagttgctaatgctatacaacctgataacattgtttatgtgatggatgcctccatt
gggcaggcttgtgaagcccaggctaaggcttttaaagataaagtagatgtagcctcagta
atagtgacaaaacttgatggccatgcaaaaggaggtggtgcactcagtgcagtcgctgcc
acaaaaagtccgattattttcattggtacaggggaacatatagatgactttgaacctttc
aaaacacagccttttattagcaaacttcttggtatgggcgacattgaaggactgatagat
aaagtcaacgagttgaagttggatgacaatgaagcacttatagagaagttgaaacatgat
tttatgagcaaaggaaatgaacaggagtcaatggcaaggctaaagaaattaatgacaata
atggatagtatgaatgatcaagaactagacagtacggatggtgccaaagtttttagtaaa
caaccaggaagaatccaaagagtagcaagaggatcgggtgtatcaacaagagatgttcaa
gaacttttgacacaatataccaagtttgcacagatggtaaaaaagatgggaggtatcaaa
ggacttttcaaagggaacagcccccctcccggctgctttcacaggctggtgttgtctgtg
gcttttccaggtgcacagtgcaagcagttggtggatctaccattctggcgtctggaggat
ggtggcccttttctcacagctccactaagtagtgccccacctttgaagtacaacgacaca
gctgtcttcattttacaagtgcaaaaaccgaggtcctgcggggtgactgccccagacgcc
gctggtgacgggctgcgccgaggtcgagacgccaggcttcagcctggctcggccagcgac
tgggcggggagaccaaggatggaagtgggcttaccggccattaccctctttctcaccagc
gccagcagccctgtggtggcgacgacgatggaccaggagccagtgggcggtgtggaacga
ggagaagccgtcgcagcctcgggagctgcggccgccgcggcattcggggaatctgcaggg
cagatgagtaacgaaagaggctttgaaaatgtagaactgggagtcataggaaaaaagaag
aaagtcccaaggagagtcatccactttgttagtggtgaaacaatggaagaatatagcaca
gatgaagacgaagttgatggcctggagaagaaagatgttttgcctactgttgatccgaac
ttgcctctgctgccttatgaactgggtaaaggcgatcagggccctggtgttctcagtggt
gccatgctcaaggtagagcctccattcttgtgtgacttccttggagagaagattgcatct
gttttgggtatcagcaccccaaagtaccaatatgccattgatgaatattatcggatgaag
aaggaggaagaagaagaagaagaagaaaacaggatgtctgaagaagcagaaaaacaatat
caacagaataaattgcagactgattccattgttcagacagatcaaccagagacagtgata
tccagctcatttgtgaatgtcaattttgaaatggagggagacagtgaagtaattatggaa
agcaagcaaaatccagtctctgtcccaccataa

>gi568815584r:34985593_35221959|GENSCAN_predicted_peptide_2|288_aa
MVEDVEEAASVEEKKSEQELKDEEMDLFTKYYSEWKGGRKNTNEFYKTIPRFYYRLPAED
EVLLQKLREESRAVFLQRKSRELLDNEELQDLENYILELIPTLPQLDGLEKSFYSFYVCT
AVRKFFFFLDPLRTGQYLNLDKDHNGMLSKEELSRYGTATMTNVFLDRVFQECLTYDGEM
DYKTYLDFVLALENRKEPAALQYIFKLLDIENKGYLNVFSLNYFFRDEIFDMVKPKDPLK
ISLQDLINSNQGDTVTTILIDLNGFWTYENREALVANDSENSADLDDT

>gi568815584r:34985593_35221959|GENSCAN_predicted_CDS_2|867_bp
atggttgaagatgtagaggaggctgcttcagtagaggaaaaaaaaagtgaacaagaatta
aaagatgaagaaatggatttatttacaaaatattactccgaatggaaaggaggtagaaaa
aacacaaatgaattctataagaccattccccggttttattataggctgcctgctgaagat
gaagtcttactacagaaattaagagaggaatcaagagctgtctttctacaaagaaaaagc
agagaactgttagataatgaagaattacaggatttagaaaactacatattggaacttatc
cctacgttgccacaattagatggtctggaaaaatctttctactccttttatgtttgtaca
gcagttaggaagttcttcttctttttagatcctttaagaacaggccagtacttgaatctt
gataaagatcacaatggcatgctcagtaaagaagaactctcacgctatggaacagctacc
atgaccaatgtcttcttagaccgtgttttccaggagtgtctcacttatgatggagaaatg
gactataagacctacttggactttgtccttgcattagaaaacagaaaggaacctgcagct
ctacaatatattttcaaactgcttgatattgagaacaaaggatacctgaatgtcttttca
cttaattatttctttagggatgaaatctttgacatggtaaaaccaaaggatcctttgaaa
atctctcttcaggatttaatcaacagtaatcaaggagacacagtaaccaccattctaatc
gatttgaatggcttctggacttacgagaacagagaggctcttgttgcaaatgacagtgaa
aactctgcagaccttgatgatacatga

>gi568815584r:34985593_35221959|GENSCAN_predicted_peptide_3|713_aa
MVLLQRRPKLTKPDFKGHDKPAFSFIVCLWRAERLSPGQSRPSVGAGAVHRGHCSFRRVY
GRVKSECRFELLNEVNFICQRSLTRHLLPPRPPTGGVLRSVESYAGLELGVPGYGFGFTP
PFQQASRGNLFLFRTAVIHVHELECKRHQRIPALSPGLRLATLDIPGLLFNRENSPAFLL
LSSPKSRTLICLFPKLWKSPYLGLGPGHSYVSLFLADRCGIRNQQRLFSLKTMSPQNTKA
TNLIAKARYLRKDEGSNKQVYSVPHFFLAGAAKERSQMNSQTEDHALAPVRNTIQLPTQP
LNSEEWDKLKEDLKENTGKTSFESWIISQMAGCHSSIDVAKSLLAWVAAKNNGIVSYDLL
VKYLYLCVFHMQTSEVIDVFEIMKARYKTLEPRGYSLLIRGLIHSDRWREALLLLEDIKK
VITPSKKNYNDCIQGALLHQDVNTAWNLYQELLGHDIVPMLETLKAFFDFGKDIKDDNYS
NKLLDILSYLRNNQLYPGESFAHSIKTWFESGQCSGCGKTIESIQLSPEEYECLKGKIMR
DVIDGGDQYRKTTPQRDLSGSWLEKGVEKDKIEALELSQTAAEWSRCGMMREMKARIRVE
KDQLSFENILGDKNFTIWFGCSDGRRQDDVQVFGLGDGKLPNCFPEWLYHFTFPPAEYEG
YSSPTSWLMLSMVKVVHRFTINVVDDELPAITIIYCISKSYLVSTILYGMTII

>gi568815584r:34985593_35221959|GENSCAN_predicted_CDS_3|2142_bp
atggttctccttcagaggcgacccaagctcaccaagccggattttaaaggccacgataag
cccgcgttttcctttatcgtgtgcctttggcgcgcggaacgcctaagtccgggtcagtct
cgtccgtcggtcggggctggcgcggtgcatcgtgggcactgtagtttccgccgcgtttat
ggccgcgttaagtctgagtgccgctttgagttgttgaatgaagtgaacttcatttgtcag
cgttcgctgactcgccacctcctccctcctcgtccccccaccggaggagttttgcggtct
gtagagagctatgcagggctggagttgggggtccctggatacggttttggctttacaccc
cctttccagcaagcttcccgtgggaatctgttccttttcaggacagctgtgatccacgtt
catgaactggaatgtaagaggcaccagaggattcctgctctgtcccctggtttgcggctt
gcgacgttggacatccccggattgttgtttaatagagaaaactcacctgccttcttgctt
ttaagtagccccaaaagcagaaccttgatttgtctctttccgaagctttggaagagccca
taccttgggctaggcccagggcactcttatgtctcgctgtttctggcagaccgctgtggc
atcaggaaccagcagaggttgttttctcttaaaacaatgtctccacagaataccaaagca
acgaatctgattgccaaggccagatatctcaggaaagatgagggcagtaataagcaagtt
tattctgttcctcatttttttttagctggagcagctaaggagagatcacagatgaattct
caaactgaagatcatgccttggcacctgtgaggaacactattcaactcccaacacaacct
ttgaattcagaggagtgggataaacttaaggaagatttaaaagaaaacaccggaaagacc
agtttcgaaagttggatcatttcacagatggctggctgtcatagctctatagatgtggct
aaatctctgctggcatgggtagcagccaaaaataatggtattgtaagttacgatttactg
gtcaagtatttgtatctctgtgtctttcatatgcagacatctgaagttattgatgtcttt
gaaattatgaaagccagatataagactttagaacctagaggttacagtcttctcatccgg
ggattgatccattcagacagatggagagaagcattgttgctgttagaggacatcaaaaaa
gttataactccttcaaaaaagaactataatgactgtatccagggagctctccttcatcaa
gatgtaaacacagcttggaatttatatcaggaattgctaggtcatgatattgttcctatg
ttggaaactttaaaagctttctttgattttggaaaagacataaaggatgataactattca
aataaactactagatattctttcatatctaagaaataatcagctgtatccaggggagtca
tttgcacacagtataaaaacatggtttgagagtggccagtgttcgggctgtggaaaaacc
atagagtctattcagctgagtccagaagaatatgaatgtcttaagggaaaaatcatgagg
gatgtgatagatggaggtgaccagtacagaaagacaacacctcagagagacctctctggc
agctggttggaaaaaggagttgaaaaggataagattgaggcactggagttgagtcagacg
gctgctgagtggtccaggtgtgggatgatgagggaaatgaaagccagaataagggtagag
aaggaccagctcagctttgagaacattttaggagataaaaatttcaccatttggtttggc
tgcagtgatgggagaagacaggatgatgttcaggttttcggcttgggtgatgggaaactg
cccaactgttttccagagtggttgtaccattttacatttccaccagcagagtatgagggc
tatagtagccccacatcctggctgatgcttagtatggttaaggtagtccacagatttact
atcaatgtagttgatgacgagctgccagcaattactattatctactgcatctccaaatcc
tatttggtatcaactattctgtatggaatgaccataatttaa

>gi568815584r:34985593_35221959|GENSCAN_predicted_peptide_4|599_aa
MARELRDECTSFSNRLDQLEERVSVMEDEMNEMKQDEKFREKRGKRNEQSLQEIWDYMKR
PNLCLIGVPESDRENGTKLENTAGYYPGELPQPSRQATIQIQEIQRMPQRYSSRRATPRY
IIVRFTKVEMKEKMLRAAREKDAEKAFDKIQQPFTLKTLNKLGIDGTYLKIIRAIYDKPT
ANVILNGQKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARTIRQEKEIKGIQLGKEEVKLS
LFADDMIVYLENPIVSAQNLLKLISSFSKVSGYKINVQKSQAFLHTNNRQTESQIMSELP
FKIATKRIKYLGIQLTRDVKDLFQENYKPLLNEIKKDTNKWKNIPCSWIGRISIVKMAIL
PKVIYRFNAIPIKLPMTFFTELEKTTLKFIWNQKRACIAKTILSQKNKAGGIKLHDCKLY
YKVIVTKTAWYWYQNRDIDQWNRTEPSEIMPLIYNYLIFDKPDKNKQWGKDSLFNKWCWE
NWLAICRKLKLDPFLTPYTKINSSWIKDLNVRPKTIKTLEENLGNTIQDIGMGKDFMSKT
LKAMATKAKIDKWDLIKLKSFCTAKEPTIRVNRQPTEWEKIFAIYSSDKGLISRIYKEL

>gi568815584r:34985593_35221959|GENSCAN_predicted_CDS_4|1800_bp
atggcacgagaactacgtgacgaatgcacaagcttcagtaaccgactcgatcaactggaa
gaaagggtatcagtgatggaagatgaaatgaatgaaatgaagcaagatgagaagtttaga
gaaaaaagaggaaaaagaaatgaacaaagcctccaagaaatatgggactatatgaaaaga
ccaaatctatgtctgattggtgtacctgaaagtgacagggagaatggaaccaagttggaa
aacactgcaggatattatccaggagaacttccccaacctagcaggcaggccaccattcaa
attcaggaaatacagagaatgccacaaagatactcctcaagaagagcaactccaagatac
ataattgtcagattcactaaagttgaaatgaaggaaaaaatgttaagggcagctagagag
aaagatgcagaaaaggcctttgacaaaattcaacagcccttcacgctaaaaactctcaat
aaattaggtattgatgggacgtatctcaaaataataagagctatttatgacaaacccaca
gccaatgtcatactgaatgggcaaaaactggaagcattccctttgaaaaccggcacaaga
cagggatgccctctctcaccacttctattcaacatagtgttggaagttctggccaggaca
atcaggcaggagaaagaaataaagggtattcaattaggaaaagaagaagtcaaattgtcc
ctgtttgcagatgacatgatcgtatatttagaaaaccccattgtctcagcccaaaatctc
cttaagctgataagcagcttcagcaaagtctcaggatacaaaatcaatgtacaaaaatca
caagcattcttacacaccaataacagacaaacagagagccaaatcatgagtgaactccca
ttcaaaattgctactaagagaataaaatacctaggaatccaacttacaagggatgtgaag
gacctcttccaggagaactacaaaccactgctcaacgaaataaaaaaggacacaaacaaa
tggaagaacattccatgctcatggataggaagaatcagtattgtgaaaatggccatactg
cccaaggtaatttatagattcaatgccatccccatcaagctaccaatgactttcttcaca
gaattggaaaaaactactttaaagttcatatggaaccaaaaaagagcctgcattgccaag
acaatcctaagccaaaagaacaaagctggaggcatcaagctacatgactgcaaactatac
tacaaggttatagtaaccaaaacagcatggtactggtaccaaaacagagatatagaccaa
tggaacagaacagagccctcagaaataatgccgcttatctacaactatctgatctttgac
aaacctgacaaaaacaagcaatggggaaaggattccctatttaataaatggtgctgggaa
aactggctagccatatgtagaaagctgaaactggatcccttccttacaccttatacaaaa
attaattcaagttggattaaagacttaaatgttagacctaaaaccataaaaactctagaa
gaaaacctaggcaataccattcaggacataggcatgggcaaggacttcatgtctaaaaca
ctaaaagcaatggcaacaaaagccaaaattgacaaatgggatctaattaaactcaagagc
ttctgcacagcaaaagaacctaccatcagagtgaacaggcaacctacagaatgggagaaa
atttttgctatctactcatctgacaaagggctaatatccagaatctacaaagaactctaa

>gi568815584r:34985593_35221959|GENSCAN_predicted_peptide_5|164_aa
MQRVLRGSATCTMFLTAFLCCSRIPGRQWTGKHQWSQTVWRTLLAGRALSDHRTGVRSQH
GSKPLIKQNCKVFLFYIQELNFESKELKRVGNNISACISCTDINICMCPEGSGIARIILV
HLKTNGCFHLSSKLKPNKITCYLFPQQMRKFSGGFPDITEAFIT

>gi568815584r:34985593_35221959|GENSCAN_predicted_CDS_5|495_bp
atgcagagagtcctaaggggctcggccacatgcaccatgttcctgactgccttcctctgc
tgcagtcgcattcctggcaggcagtggactgggaaacaccagtggtcgcagactgtatgg
agaaccttactggctgggcgtgccctatctgatcacaggacaggagtaaggtcacagcat
ggaagtaagcctttaataaagcagaattgtaaggtctttttattttacattcaagaactg
aattttgagagtaaagagttaaagcgtgtaggcaataacatttcagcatgtatctcatgt
actgatataaatatatgcatgtgcccagagggctccggcatcgccaggattattttggtt
catttgaagacgaatggctgtttccatttatcctccaagcttaaacccaataagattacc
tgttatctctttcctcaacagatgagaaaattttcagggggttttcctgatataacagag
gctttcataacataa