Result of FASTA (ccds) for
pF1KB6412
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6412, 335 aa
1>>>pF1KB6412 335 - 335 aa - 335 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4462+/-0.000768; mu= 16.4417+/- 0.047
mean_var=93.6508+/-18.017, 0's: 0 Z-trim(111.4): 40 B-trim: 46 in 1/51
Lambda= 0.132531
statistics sampled from 12280 (12315) to 12280 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.738), E-opt: 0.2 (0.378), width: 16
Scan time: 2.520
The best scores are: opt bits E(32554)
CCDS12628.1 PLAUR gene_id:5329|Hs108|chr19 ( 335) 2429 474.2 6.3e-134
CCDS33041.1 PLAUR gene_id:5329|Hs108|chr19 ( 281) 1832 360.0 1.3e-99
CCDS74386.1 PLAUR gene_id:5329|Hs108|chr19 ( 286) 1478 292.3 3.1e-79
CCDS33042.1 PLAUR gene_id:5329|Hs108|chr19 ( 290) 1136 227.0 1.5e-59
>>CCDS12628.1 PLAUR gene_id:5329|Hs108|chr19 (335 aa)
initn: 2429 init1: 2429 opt: 2429 Z-score: 2517.9 bits: 474.2 E(32554): 6.3e-134
Smith-Waterman score: 2429; 100.0% identity (100.0% similar) in 335 aa overlap (1-335:1-335)
10 20 30 40 50 60
pF1KB6 MGHPPLLPLLLLLHTCVPASWGLRCMQCKTNGDCRVEECALGQDLCRTTIVRLWEEGEEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MGHPPLLPLLLLLHTCVPASWGLRCMQCKTNGDCRVEECALGQDLCRTTIVRLWEEGEEL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 ELVEKSCTHSEKTNRTLSYRTGLKITSLTEVVCGLDLCNQGNSGRAVTYSRSRYLECISC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 ELVEKSCTHSEKTNRTLSYRTGLKITSLTEVVCGLDLCNQGNSGRAVTYSRSRYLECISC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 GSSDMSCERGRHQSLQCRSPEEQCLDVVTHWIQEGEEGRPKDDRHLRGCGYLPGCPGSNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GSSDMSCERGRHQSLQCRSPEEQCLDVVTHWIQEGEEGRPKDDRHLRGCGYLPGCPGSNG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 FHNNDTFHFLKCCNTTKCNEGPILELENLPQNGRQCYSCKGNSTHGCSSEETFLIDCRGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 FHNNDTFHFLKCCNTTKCNEGPILELENLPQNGRQCYSCKGNSTHGCSSEETFLIDCRGP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 MNQCLVATGTHEPKNQSYMVRGCATASMCQHAHLGDAFSMNHIDVSCCTKSGCNHPDLDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MNQCLVATGTHEPKNQSYMVRGCATASMCQHAHLGDAFSMNHIDVSCCTKSGCNHPDLDV
250 260 270 280 290 300
310 320 330
pF1KB6 QYRSGAAPQPGPAHLSLTITLLMTARLWGGTLLWT
:::::::::::::::::::::::::::::::::::
CCDS12 QYRSGAAPQPGPAHLSLTITLLMTARLWGGTLLWT
310 320 330
>>CCDS33041.1 PLAUR gene_id:5329|Hs108|chr19 (281 aa)
initn: 1862 init1: 1832 opt: 1832 Z-score: 1901.9 bits: 360.0 E(32554): 1.3e-99
Smith-Waterman score: 1832; 100.0% identity (100.0% similar) in 252 aa overlap (1-252:1-252)
10 20 30 40 50 60
pF1KB6 MGHPPLLPLLLLLHTCVPASWGLRCMQCKTNGDCRVEECALGQDLCRTTIVRLWEEGEEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MGHPPLLPLLLLLHTCVPASWGLRCMQCKTNGDCRVEECALGQDLCRTTIVRLWEEGEEL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 ELVEKSCTHSEKTNRTLSYRTGLKITSLTEVVCGLDLCNQGNSGRAVTYSRSRYLECISC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 ELVEKSCTHSEKTNRTLSYRTGLKITSLTEVVCGLDLCNQGNSGRAVTYSRSRYLECISC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 GSSDMSCERGRHQSLQCRSPEEQCLDVVTHWIQEGEEGRPKDDRHLRGCGYLPGCPGSNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GSSDMSCERGRHQSLQCRSPEEQCLDVVTHWIQEGEEGRPKDDRHLRGCGYLPGCPGSNG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 FHNNDTFHFLKCCNTTKCNEGPILELENLPQNGRQCYSCKGNSTHGCSSEETFLIDCRGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 FHNNDTFHFLKCCNTTKCNEGPILELENLPQNGRQCYSCKGNSTHGCSSEETFLIDCRGP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 MNQCLVATGTHEPKNQSYMVRGCATASMCQHAHLGDAFSMNHIDVSCCTKSGCNHPDLDV
::::::::::::
CCDS33 MNQCLVATGTHERSLWGSWLPCKSTTALRPPCCEEAQATHV
250 260 270 280
>>CCDS74386.1 PLAUR gene_id:5329|Hs108|chr19 (286 aa)
initn: 2056 init1: 1472 opt: 1478 Z-score: 1536.0 bits: 292.3 E(32554): 3.1e-79
Smith-Waterman score: 1962; 85.1% identity (85.4% similar) in 335 aa overlap (1-335:1-286)
10 20 30 40 50 60
pF1KB6 MGHPPLLPLLLLLHTCVPASWGLRCMQCKTNGDCRVEECALGQDLCRTTIVRLWEEGEEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MGHPPLLPLLLLLHTCVPASWGLRCMQCKTNGDCRVEECALGQDLCRTTIVRLWEEGEEL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 ELVEKSCTHSEKTNRTLSYRTGLKITSLTEVVCGLDLCNQGNSGRAVTYSRSRYLECISC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 ELVEKSCTHSEKTNRTLSYRTGLKITSLTEVVCGLDLCNQGNSGRAVTYSRSRYLECISC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 GSSDMSCERGRHQSLQCRSPEEQCLDVVTHWIQEGEEGRPKDDRHLRGCGYLPGCPGSNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 GSSDMSCERGRHQSLQCRSPEEQCLDVVTHWIQEGEEGRPKDDRHLRGCGYLPGCPGSNG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 FHNNDTFHFLKCCNTTKCNEGPILELENLPQNGRQCYSCKGNSTHGCSSEETFLIDCRGP
::::::::::::::::::::::
CCDS74 FHNNDTFHFLKCCNTTKCNEGP--------------------------------------
190 200
250 260 270 280 290 300
pF1KB6 MNQCLVATGTHEPKNQSYMVRGCATASMCQHAHLGDAFSMNHIDVSCCTKSGCNHPDLDV
.::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 -----------KPKNQSYMVRGCATASMCQHAHLGDAFSMNHIDVSCCTKSGCNHPDLDV
210 220 230 240 250
310 320 330
pF1KB6 QYRSGAAPQPGPAHLSLTITLLMTARLWGGTLLWT
:::::::::::::::::::::::::::::::::::
CCDS74 QYRSGAAPQPGPAHLSLTITLLMTARLWGGTLLWT
260 270 280
>>CCDS33042.1 PLAUR gene_id:5329|Hs108|chr19 (290 aa)
initn: 2052 init1: 1110 opt: 1136 Z-score: 1182.6 bits: 227.0 E(32554): 1.5e-59
Smith-Waterman score: 1966; 86.3% identity (86.6% similar) in 335 aa overlap (1-335:1-290)
10 20 30 40 50 60
pF1KB6 MGHPPLLPLLLLLHTCVPASWGLRCMQCKTNGDCRVEECALGQDLCRTTIVRLWEEGEEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MGHPPLLPLLLLLHTCVPASWGLRCMQCKTNGDCRVEECALGQDLCRTTIVRLWEEGEEL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 ELVEKSCTHSEKTNRTLSYRTGLKITSLTEVVCGLDLCNQGNSGRAVTYSRSRYLECISC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 ELVEKSCTHSEKTNRTLSYRTGLKITSLTEVVCGLDLCNQGNSGRAVTYSRSRYLECISC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 GSSDMSCERGRHQSLQCRSPEEQCLDVVTHWIQEGEEGRPKDDRHLRGCGYLPGCPGSNG
:::::::::::::::::::::::::::::::::::::
CCDS33 GSSDMSCERGRHQSLQCRSPEEQCLDVVTHWIQEGEE-----------------------
130 140 150
190 200 210 220 230 240
pF1KB6 FHNNDTFHFLKCCNTTKCNEGPILELENLPQNGRQCYSCKGNSTHGCSSEETFLIDCRGP
.:::::::::::::::::::::::::::::::::::::
CCDS33 ----------------------VLELENLPQNGRQCYSCKGNSTHGCSSEETFLIDCRGP
160 170 180 190
250 260 270 280 290 300
pF1KB6 MNQCLVATGTHEPKNQSYMVRGCATASMCQHAHLGDAFSMNHIDVSCCTKSGCNHPDLDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MNQCLVATGTHEPKNQSYMVRGCATASMCQHAHLGDAFSMNHIDVSCCTKSGCNHPDLDV
200 210 220 230 240 250
310 320 330
pF1KB6 QYRSGAAPQPGPAHLSLTITLLMTARLWGGTLLWT
:::::::::::::::::::::::::::::::::::
CCDS33 QYRSGAAPQPGPAHLSLTITLLMTARLWGGTLLWT
260 270 280 290
335 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 22:54:29 2016 done: Fri Nov 4 22:54:29 2016
Total Scan time: 2.520 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]