GENSCAN 1.0	Date run:  7-Nov-116	Time: 03:41:21

Sequence gi568815597r:20014117_20219498 : 205382 bp : 46.64% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.03 PlyA -    386    381    6                               1.05
 1.02 Term -  10778  10602  177  2  0   37   49   133 0.656   1.99
 1.01 Init -  13144  13085   60  1  0   74   82    30 0.507   2.25
 1.00 Prom -  15404  15365   40                               0.34

 2.00 Prom +  39279  39318   40                              -2.56
 2.01 Init +  59907  59949   43  2  1   72   69    58 0.357   2.88
 2.02 Term +  62645  62760  116  0  2   86   33   108 0.424   3.83
 2.03 PlyA +  62803  62808    6                               1.05

 3.00 Prom +  68854  68893   40                              -3.96
 3.01 Init +  71951  72111  161  1  2   96   85   248 0.816  24.60
 3.02 Intr +  75673  75779  107  1  2   54   91   101 0.999   6.86
 3.03 Term +  76452  76576  125  1  2  117   47   124 0.999   9.75
 3.04 PlyA +  77023  77028    6                               1.05

 4.08 PlyA -  77545  77540    6                               1.05
 4.07 Term -  79174  78997  178  0  1   23   36   280 0.981  13.46
 4.06 Intr -  93587  93421  167  2  2   81  103    84 0.708   7.96
 4.05 Intr -  99494  99359  136  1  1   78   22    85 0.373   1.47
 4.04 Intr - 100143 100005  139  1  1   94  -17   202 0.554   9.82
 4.03 Intr - 101497 101391  107  0  2   94   68   127 0.995  11.16
 4.02 Intr - 102361 102217  145  2  1   77   53   150 0.988   9.74
 4.01 Init - 105382 105343   40  1  1   82  105    84 0.766   7.98
 4.00 Prom - 108521 108482   40                              -3.66

 5.00 Prom + 109104 109143   40                              -4.76
 5.01 Init + 112001 112014   14  1  2   72  115     8 0.145   1.52
 5.02 Intr + 126050 126102   53  2  2  114  101    89 0.816  11.35
 5.03 Intr + 129330 129474  145  1  1   82   82   231 0.495  21.24
 5.04 Intr + 130464 130573  110  0  2  120   73   193 0.999  20.93
 5.05 Intr + 134074 134240  167  2  2   94   26   274 0.979  21.48
 5.06 Intr + 135677 135861  185  1  2   98   11    82 0.032   0.09
 5.07 Intr + 141456 141738  283  0  1   88   49   162 0.067   9.72
 5.08 Intr + 142839 143520  682  2  1   44   77   346 0.546  20.26
 5.09 Intr + 143991 144260  270  1  0   39  116   122 0.276   7.61
 5.10 Term + 145514 145758  245  0  2  107   42    76 0.245   0.96
 5.11 PlyA + 146430 146435    6                               1.05

 6.04 PlyA - 148962 148957    6                               1.05
 6.03 Term - 150041 149875  167  0  2  110   50   148 0.857  11.28
 6.02 Intr - 158781 158678  104  2  2    5   59   177 0.694   6.32
 6.01 Init - 161078 160891  188  2  2   74   94   159 0.483  11.79
 6.00 Prom - 161747 161708   40                              -7.46

 7.00 Prom + 161965 162004   40                             -10.55
 7.01 Init + 162638 162716   79  1  1   70   50    76 0.422   3.22
 7.02 Intr + 164836 164894   59  2  2   54   86   103 0.351   5.30
 7.03 Intr + 167411 167602  192  1  0   15  121    65 0.408   2.19
 7.04 Intr + 167870 167962   93  1  0   69  113    64 0.983   7.16
 7.05 Intr + 169068 169131   64  2  1   52   94    94 0.920   4.69
 7.06 Term + 171916 172037  122  2  2   76   43    63 0.804  -0.76
 7.07 PlyA + 176270 176275    6                               1.05

 8.00 Prom + 176289 176328   40                              -8.56
 8.01 Sngl + 176446 177288  843  0  0   84   47   616 0.946  52.86
 8.02 PlyA + 179111 179116    6                               1.05

 9.03 PlyA - 180979 180974    6                               1.05
 9.02 Term - 189748 189617  132  1  0   85   47    63 0.582  -0.01
 9.01 Init - 189915 189862   54  0  0  125   94    23 0.656   6.04

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term + 136958 137062  105  1  0  111   52    62 0.917   3.31
S.002 Init + 184867 184965   99  0  0   80   95    52 0.809   5.36


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815597r:20014117_20219498|GENSCAN_predicted_peptide_1|78_aa
MNNIDRPLARFTKKRREKIQMQKTRLTKSRIIKIKTFRKISIEGTYLKIIKAIYDKPTVN
IILNKEKLKAFPLRTGTR

>gi568815597r:20014117_20219498|GENSCAN_predicted_CDS_1|237_bp
atgaacaatattgatagaccattagcaagattcaccaagaaaagaagagagaagatccaa
atgcagaaaactcgtttgacaaaatcaagaatcataaagattaaaaccttcagaaaaatc
agcatagaagggacatacctcaagataataaaagccatctatgacaagcccacagtcaac
attatactgaacaaggaaaagttgaaagcatttcccctgagaactggaacaagataa

>gi568815597r:20014117_20219498|GENSCAN_predicted_peptide_2|52_aa
MTVSAMKGKNRVTLGNARVDSISDEFYNIPETGKLPVERRIMEDFPEEEDLM

>gi568815597r:20014117_20219498|GENSCAN_predicted_CDS_2|159_bp
atgacggtcagtgccatgaaggggaaaaacagggtgaccttgggaaatgccagagtggac
agcatatcagatgagttctataacattccagagacaggtaagctccctgtggaaagaagg
atcatggaagacttcccggaggaggaggacttgatgtag

>gi568815597r:20014117_20219498|GENSCAN_predicted_peptide_3|130_aa
MGYLPGVPAVQGGLLDLKSMIEKVTGKNALTNYGFYGCYCGWGGRGTPKDGTDWCCWAHD
HCYGRLEEKGCNIRTQSYKYRFAWGVVTCEPGPFCHVNLCACDRKLVYCLKRNLRSYNPQ
YQYFPNILCS

>gi568815597r:20014117_20219498|GENSCAN_predicted_CDS_3|393_bp
atgggctatcttccaggtgtgcctgctgtgcaaggaggcttgctggacctaaaatcaatg
atcgagaaggtgacagggaagaacgccctgacaaactacggcttctacggctgttactgc
ggctggggcggccgaggaacccccaaggatggcaccgattggtgctgttgggcgcatgac
cactgctatgggcggctggaggagaagggctgcaacattcgcacacagtcctacaaatac
agattcgcgtggggcgtggtcacctgcgagcccgggcccttctgccatgtgaacctctgt
gcctgtgaccggaagctcgtctactgcctcaagagaaacctacggagctacaacccacag
taccaatactttcccaacatcctctgctcctag

>gi568815597r:20014117_20219498|GENSCAN_predicted_peptide_4|303_aa
MELALLCGLVVMAGVIPIQGGILNLNKMVKQVTGKMPILSYWPYGCHCGLGGRGQPKDAT
DWCCQTHDCCYDHLKTQGCSIYKDYYRYNFSQGNIHCSDKGSWCEQQLCACDKEVAFCLK
RNLDTYQKRLRFYWRPHCRGQTPGQALKSLQVEAMPVLNSVASLVPKATPEPRRSSINPS
WVKPRQSRQEAIEVGSKCILLVGCLCWSPFQDPGLGWGERKPKLSLFPPQGFSPEMMQQL
SLALRLGDKSKIPSEEEEGEGEGRGRRGGGREEEEEEEEEEEEEEEEEEEEEYPYTSYLI
SPP

>gi568815597r:20014117_20219498|GENSCAN_predicted_CDS_4|912_bp
atggaacttgcactgctgtgtgggctggtggtgatggctggtgtgattccaatccagggc
gggatcctgaacctgaacaagatggtcaagcaagtgactgggaaaatgcccatcctctcc
tactggccctacggctgtcactgcggactaggtggcagaggccaacccaaagatgccacg
gactggtgctgccagacccatgactgctgctatgaccacctgaagacccaggggtgcagc
atctacaaggactattacagatacaacttttcccaggggaacatccactgctctgacaag
ggaagctggtgtgagcagcagctgtgtgcctgtgacaaggaggtggccttctgcctgaag
cgcaacctggacacctaccagaagcgactgcgtttctactggcggccccactgccggggg
cagacccctgggcaagctctgaagtccctgcaggtggaggccatgcctgtcttaaactca
gttgcatccctggtgcccaaagcaacaccagaaccaagaaggagctccataaatccttct
tgggtgaagcctagacaaagccgccaggaggccattgaagtggggtcaaagtgcattctg
ctcgtgggctgcctctgctggagccccttccaggatccagggctaggctggggtgagagg
aagccaaagctgtccctgttccctcctcaaggattcagccctgagatgatgcagcagctg
tcactggctctgcgcctgggtgacaagagcaaaattccatctgaagaagaagaaggagaa
ggagaaggaagaggaagaagaggaggaggaagggaggaagaagaggaggaggaagaggag
gaagaagaggaggaggaagaagaagaagaagaagaatatccatacacctcctacctcatc
agcccaccttag

>gi568815597r:20014117_20219498|GENSCAN_predicted_peptide_5|717_aa
MTGTWSSLGMKKFFTVAILAGSVLSTAHGSLLNLKAMVEAVTGRSAILSFVGYGCYCGLG
GRGQPKDEVDWCCHAHDCCYQELFDQGCHPYVDHYDHTIENNTEIVCSDLNKTECDKQTC
MCDKNMVLCLMNQTYREEYRGFLNVYCQGPTPNCSIYEPPPEEVHLTFLLTCPSLNSGSA
ASTEPAPPARKPLKPPSARTQQPPASSPGSAPGAPLSLGRESREGKNNTPSYTGKPQAII
DLLQTIIQTHNPTWADCHQVLMYLFNTDERRRVLQAATKWLEEHVPADYQNPQEYVRIQL
PGTDPQWDPDERQYAKAKPPGTKDYRLIQDLHLVNQATVTLHPTVPNPYTLLWLLPAEDS
WFTYLGLKDAFFSIRLAPESQKLFAFQWEDPGSGVTTQYTWTQLPQGFKNSTTIFGEALA
RDLQKFPTRDLGCVLLQYVDDLLLGHLMAVGCAKGMDTLLWHLEDCGYKVSKKKAQICQQ
EVRYLGFTIQQGERSLGSERMQVICNLPEPKTKRQVREFLGAVGFCRLWIPNFAVLAKPL
YEVIKGVSESPVERNYVEVLDTVYSSRPDLQDHPWTSVDWELYMDRSSFVNPQGERCAGY
AVVTLDAVTEAKSLPQDTSAQKVKLIALIWALELSEGDRVWITDWNIASLQPRWRGPQTI
VLTTPTAIKVEGIPAWIHHSHVKPKASETWEVRPSLDNPCKMTLKKMTSPAPVTPGS

>gi568815597r:20014117_20219498|GENSCAN_predicted_CDS_5|2154_bp
atgactggcacatggtctagcctgggtatgaagaagttcttcaccgtggccatccttgct
ggcagcgttctgtccacagctcacggcagcctgctcaacctgaaggccatggtggaggcc
gtcacagggaggagcgccatcctgtccttcgtgggctacggttgctactgtgggctgggg
ggccgtggccagcccaaggatgaggtggactggtgctgccacgcccacgactgctgctac
caggaactctttgaccaaggctgtcacccctatgtggaccactatgatcacaccatcgag
aacaacactgagatagtctgcagtgacctcaacaagacagagtgtgacaagcagacatgc
atgtgtgacaagaacatggttctgtgcctcatgaaccagacgtaccgagaggagtaccgt
ggcttcctcaatgtctactgccagggccccacgcccaactgcagcatctatgaaccgccc
cctgaggaggtgcaccttaccttcctccttacctgcccgagcctcaactcagggtcagca
gcctccacggagccagccccacctgcccgaaaaccactgaagccaccctccgcccggact
caacagccgccagcaagctcgcctggcagtgcccctggagcaccattgtcgctggggagg
gagagccgggaagggaagaacaataccccatcctataccggaaagcctcaagctataatt
gatttgctccaaactataatccagacccacaaccccacctgggctgattgccaccaggtg
ctcatgtacctctttaacacagatgaaaggaggagagtgctccaagcagcaactaagtgg
ctggaagaacatgttcctgctgattaccaaaacccccaagagtatgtgaggatccaatta
ccaggaacagacccccagtgggacccagatgaaagacagtatgcaaaggctaaaccgcca
gggaccaaggactacaggctgatacaggacttgcacttggtcaatcaagctacggtgact
ttacatccaacagtacctaacccatacacattgttgtggttgctgccagctgaggacagc
tggttcacctacctgggcctgaaggacgctttctttagcatcagactagcccctgagagc
cagaaactgtttgcctttcagtgggaggatccagggtcaggtgtcaccactcagtacact
tggacccagcttccccaagggttcaagaactccaccaccatcttcggggaggccctggct
cgagacctgcaaaagtttcccaccagagacctaggctgcgtgttgctccagtatgtcgat
gacctcctgctgggacacctcatggcagttgggtgtgccaagggaatggataccctgctc
tggcacctggaggactgtgggtataaggtatccaagaagaaagctcagatatgtcaacag
gaggtacgttacttgggatttactatccaacagggggagcgcagcctgggatcagaaaga
atgcaggtcatttgcaacctaccggagcctaagaccaaaaggcaggtgagagaattctta
ggagctgtggggttctgcaggttatggatcccaaactttgcagtactggccaaacctctg
tacgaagtcataaagggagtgtcagagagcccagtcgaacgtaactatgtagaggtgttg
gacacagtttattctagcaggcctgacctccaagaccatccttggacatcagtagactgg
gagctgtacatggacaggagcagcttcgtcaacccacaaggagagaggtgtgcaggatat
gcagtggtaaccctggatgctgtcactgaagccaaatcattgccccaggatacttcagcc
caaaaggtcaaactcattgctttaatttgggccttagagctaagtgaaggtgatcgggta
tggatcacggattggaacatagcctccttgcagccacggtggagaggaccccagaccatc
gtcttgaccactcccacagccataaaggtagaaggaatcccagcctggattcaccacagc
catgtaaaacctaaagcatctgagacctgggaggtgagaccaagcttggacaacccatgc
aagatgactttgaagaagatgacaagccctgctccagtcacacctggaagctga

>gi568815597r:20014117_20219498|GENSCAN_predicted_peptide_6|152_aa
MLIATSFFLFFSSVVAAPTHSSFWQFQRRVKHITGRSAFFSYYGYGCYCGLGDKGIPVDD
TDRHSPSSPSPYEKLKEFSCQPVLNSYQFHIVNGAVVCGCTLGPGASCHCRLKACECDKQ
SVHCFKESLPTYEKNFKQFSSQPRCGRHKPWC

>gi568815597r:20014117_20219498|GENSCAN_predicted_CDS_6|459_bp
atgctcattgcaacttccttcttcctttttttctcatcggtggtggcagcccccacccac
agcagtttctggcagtttcagaggagggtcaaacacatcacggggcgaagtgccttcttc
tcatattacggatatggctgctactgtgggcttggggataaagggatccccgtggatgac
actgacaggcacagcccctcatctccctctccctacgagaagctgaaggagttcagctgc
cagcctgtgttgaacagctaccagttccacatcgtcaatggcgcagtggtttgtggatgc
acccttggtcctggtgccagctgccactgcaggctgaaggcctgtgagtgtgacaagcaa
tccgtgcactgcttcaaagagagcctgcccacctatgagaaaaacttcaagcagttctcc
agccagcccaggtgtggcagacataagccctggtgctag

>gi568815597r:20014117_20219498|GENSCAN_predicted_peptide_7|202_aa
MDLDKPPLNESSKRVYQSPVDPKLFPRLGYQLLLTLSLTENHSLLQLSCFRAYPKHHREG
KTQNSPSSEAGITTLLDSCFRCSSNKLLSFISQAQQPDRNGVRAASLNRKRGGDNDSGPP
QNASKIPQAPEGENTWSTVAKPHNNPVLIITILEMRKLTSSEGRFRSRRKHVAPHPAALP
GRPGLFTSRTEPGRRRRMERNG

>gi568815597r:20014117_20219498|GENSCAN_predicted_CDS_7|609_bp
atggatctggacaaacctccactcaacgaatccagcaaaagagtctatcagtctccagta
gaccccaaactgtttcccaggctggggtaccagctgctgctgacgctgtccctcactgag
aaccactctctgctgcagctctcctgcttccgtgcctatccaaaacaccaccgagaaggc
aaaacccaaaacagcccaagcagcgaagcaggtatcacaacactcttagactcttgtttt
agatgcagttctaacaagctgctcagcttcatttctcaggcccagcagccggacaggaat
ggagtcagagcagcttctcttaataggaagagaggtggagacaatgattctggcccccca
cagaatgccagcaagattccacaagctcctgaaggtgaaaatacttggtcaacagtagcc
aagccgcacaacaatcctgtgcttatcatcaccattctagagatgcggaaactgacatcc
agcgaaggccggttccggtcacgccggaagcacgtggccccccaccctgcggcgttgccc
gggagaccagggttgtttaccagcaggacagagcccgggcgcaggcggcggatggagcgg
aacggctag

>gi568815597r:20014117_20219498|GENSCAN_predicted_peptide_8|280_aa
MATEAPVNIAPPECSTVVSTAVDSLIWQPNSLNMHMIRPKSAKGRTRPSLQKSQGVEVCA
HHIPSPPPAIPYELPSSQKPGACAPKSPNQGASDEIPELQQQVPTGASSSLNKYPVLPSI
NRKNLEEEAVETVAKKASSLQLSSIRALYQDETGTMKTSEEDSRARACAVERKFIVRTKK
QGSSRAGNLEEPSDQEPRLLLAVRSPTGQRFVRHFRPTDDLQTIVAVAEQKNKTSYRHCS
IETMEVPRRRFSDLTKSLQECRIPHKSVLGISLEDGEGWP

>gi568815597r:20014117_20219498|GENSCAN_predicted_CDS_8|843_bp
atggccacagaagcccctgtgaatatagcaccacctgagtgtagcactgttgtcagcaca
gcagttgacagcctcatttggcagccaaactcactaaatatgcacatgataaggcccaag
tccgccaagggacggacaagaccgagtctgcagaaatcccagggcgtggaggtgtgcgct
catcatataccatctccgcctccagccattccctatgagttgccaagcagccaaaaacca
ggagcctgtgcacccaaatctccaaaccagggagcttctgatgagatccctgagctgcag
cagcaagtacccactggggcttcctcttctctcaataagtatccagtccttccttccatc
aacagaaagaacctggaggaggaggctgtggaaaccgttgccaaaaaggccagctcactg
caactgagcagtatccgggctctttaccaagacgagacgggcaccatgaagacaagtgaa
gaagattccagagctcgagcttgtgccgtggagaggaaattcatcgtccgaaccaagaaa
cagggctcttccagggctggaaatctggaggaaccatcggaccaagaaccaaggttgctg
cttgctgttagatcaccaacaggccaaaggtttgtacgccatttccggccaacagatgat
ttgcaaaccattgttgctgtggccgaacagaaaaacaaaacctcctaccgacactgcagc
attgaaacaatggaggtgcccaggaggcgattttctgacctcaccaaatctctgcaagag
tgcagaatcccccacaagtctgtgctgggcatctcactggaagatggggaagggtggccc
tga

>gi568815597r:20014117_20219498|GENSCAN_predicted_peptide_9|61_aa
MAKLLFLSESHFLLCRMELEIPPRFHRRNGTPGGHIGSSLGTFTVWTVQLRHRKNEALGK
T

>gi568815597r:20014117_20219498|GENSCAN_predicted_CDS_9|186_bp
atggccaagttgctcttcctctctgagtcccatttcctcctctgtagaatggagctagaa
attccccccaggttccaccgaagaaacggcaccccaggtggccacataggaagttctctg
ggcactttcactgtctggacagtgcagcttcggcacagaaagaatgaggccttgggcaaa
acatag