GENSCAN 1.0	Date run:  3-Nov-116	Time: 12:09:42

Sequence gi568815595r:58328037_58533809 : 205773 bp : 44.15% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   4929   5054  126  2  0   98   74   260 0.028  26.48
 1.02 Intr +  37838  37888   51  1  0  101  115    29 0.199   6.00
 1.03 Intr +  41395  41442   48  0  0  104   99    10 0.120   2.58
 1.04 Intr +  54478  54664  187  0  1   88  107    42 0.060   5.36
 1.05 Intr +  62546  62623   78  0  0   82   66    58 0.683   2.52
 1.06 Intr +  63111  63184   74  1  2   73   94    13 0.802  -0.47
 1.07 Intr +  63737  63811   75  1  0  111   97    -3 0.761   2.61
 1.08 Intr +  66962  67066  105  1  0   77   77    78 0.983   6.01
 1.09 Intr +  67622  67723  102  1  0   86   94    52 0.984   5.97
 1.10 Intr +  69003  69164  162  2  0   65  101    90 0.994   8.17
 1.11 Intr +  69569  69686  118  1  1  102   52    96 0.569   7.44
 1.12 Intr +  71206  71341  136  2  1    9   97    41 0.129  -3.27
 1.13 Intr +  75826  75874   49  1  1   90   98    39 0.400   3.78
 1.14 Intr +  80888  80965   78  1  0  113   99    39 0.365   7.25
 1.15 Intr +  82054  82123   70  0  1   85   93    54 0.307   4.35
 1.16 Term +  96716  96924  209  0  2  139   48   128 0.973  11.40
 1.17 PlyA +  97097  97102    6                               1.05

 2.11 PlyA -  97143  97138    6                               1.05
 2.10 Term - 100143  99998  146  1  2  104   29   115 0.935   5.27
 2.09 Intr - 100578 100437  142  0  1   65   63   114 0.978   6.53
 2.08 Intr - 101763 101672   92  1  2  115  105    -1 0.999   4.01
 2.07 Intr - 102202 102092  111  2  0   56  116    43 0.935   4.25
 2.06 Intr - 102906 102621  286  0  1   84   76   170 0.984  12.31
 2.05 Intr - 103592 103557   36  2  0   82   80    33 0.558   0.36
 2.04 Intr - 103757 103695   63  2  0   50   99    51 0.713   1.31
 2.03 Intr - 103948 103841  108  1  0   74   88   126 0.985  11.68
 2.02 Intr - 105648 105595   54  0  0  115   92    68 0.970   9.08
 2.01 Init - 105773 105732   42  2  0  104   80    40 0.704   4.61
 2.00 Prom - 109789 109750   40                              -1.66

 3.00 Prom + 111576 111615   40                              -6.06
 3.01 Init + 112106 112209  104  1  2   85  115    60 0.457   8.12
 3.02 Intr + 133182 133304  123  0  0   44  113    62 0.027   4.00
 3.03 Intr + 144281 144424  144  2  0   75   75    60 0.026   2.80
 3.04 Intr + 170677 170746   70  1  1   50  101    70 0.333   3.68
 3.05 Term + 172910 173596  687  1  0   73   39   497 0.739  36.91
 3.06 PlyA + 174029 174034    6                               1.05

 4.15 PlyA - 174337 174332    6                               1.05
 4.14 Term - 174739 174734    6  1  0   97   37     0 0.007  -6.33
 4.13 Intr - 180989 180857  133  1  1   88   68   156 0.803  14.25
 4.12 Intr - 189387 189170  218  0  2   58  117   212 0.953  18.40
 4.11 Intr - 194565 194460  106  2  1   89  105    22 0.982   4.22
 4.10 Intr - 196569 196390  180  2  0  131  121    60 0.996  12.58
 4.09 Intr - 198620 198430  191  2  2   99  110   194 0.998  21.08
 4.08 Intr - 200920 200758  163  0  1   98   67   141 0.969  12.98
 4.07 Intr - 200997 200957   41  0  2   52   72    19 0.562  -6.28
 4.06 Intr - 201652 201521  132  1  0   42  115    20 0.402   0.94
 4.05 Intr - 202602 202423  180  0  0  103    1   277 0.850  20.56
 4.04 Intr - 203330 203215  116  0  2   65   31   184 0.923  10.57
 4.03 Intr - 203776 203657  120  2  0   89  115    38 0.985   7.07
 4.02 Intr - 205516 205409  108  2  0   64   74   102 0.986   6.66
 4.01 Intr - 205675 205567  109  1  1   34  110    38 0.288   0.46

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term -   4815   4487  329  1  2    2   47   279 0.861  10.07
S.002 Intr -   5121   4916  206  2  2   58   75   119 0.922   6.44
S.003 Intr -   5603   5374  230  2  2   52  105   161 0.942  10.87
S.004 Init +  93780  93816   37  2  1   52  121    39 0.888   3.80


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815595r:58328037_58533809|GENSCAN_predicted_peptide_1|555_aa
AAAAGRPGMAFMEKPPAGKVLLDDTVPLTAAIEASQSLQSHTEYIIRVQRGISVENSWQI
VRRYSDFDLLNNSLQIAGLSLPLPPKKLIGNMDREFIAERQKGLQNYLNVITTNHILSNC
ELVKKFLDPNNYSANYTEIALQQVSMFFRSEPKWEVVEPLKDIGWRIRKKYFLMKIKNQP
KERLVLSWADLGPDKYLSDKDFQCLIKLLPSCLHPYIYRVTFATANESSALLIRMFNEKG
TLKDLIYKAKPKDPFLKKYCNPKKIQGLELQQIKTYGRQILEVLKFLHDKGFPYGHLHAS
NVMLDGDTCRLLDLENSLLGLPSFYRSYFSQFRKINTLESVDVHCFGHLLYEMTYGRPPD
SVPVDSFPPAPSMAVASGFASVFCGTKMCICSFQVAVLESTLSCEACKNGMPTISRLLQM
PLFSDVLLTTSEKPQFKIPTKLKEALRIAKECIEKRLIEEQKQKSKRSALENSEEHSAKY
SNSNNSGISALPPPPPPPPPPAAPLPPASTEAPAQLSSQAVNGMSRGALLSSIQNFQKGT
LRKAKTCDHSAPKIG

>gi568815595r:58328037_58533809|GENSCAN_predicted_CDS_1|1668_bp
gcggcggcggccgggcgtcccgggatggccttcatggagaagccgccagccggcaaggtg
ctgctggacgacacggtgccgctgacagcagccatcgaggcgagccagagcctgcagtcc
cacacggaatatattattcgagtgcaaagaggaatttctgtggaaaacagctggcagatt
gttagaagatacagtgactttgatttgcttaacaacagcttacagattgcaggcctaagt
ctacctcttcctcccaaaaaattgattggtaacatggatcgtgaattcatagctgaaagg
cagaaaggtcttcagaactatctcaacgtgatcacaacaaatcatatcttgtctaattgt
gagctggttaagaagtttttagatccaaacaactattccgcaaactatactgagattgcc
ttgcaacaggtttccatgttcttccgatcagaaccaaagtgggaggtggtggaacctttg
aaagacataggttggagaataaggaagaaatatttcttgatgaagattaaaaatcagcca
aaggaacggctagtgttaagctgggctgaccttggcccagacaagtatttgtcagataaa
gattttcagtgtctaatcaaacttctgccttcttgtttgcacccttacatctatcgggtt
acctttgccacagctaatgaatcctcagcgttgctaattaggatgtttaacgaaaaggga
acattgaaggatctgatctacaaggcaaaaccaaaagacccatttctaaagaagtactgc
aaccctaagaagattcagggcctggaactccagcaaataaaaacatatggacggcaaata
ttagaggtactgaagtttcttcatgacaagggattcccttatgggcatcttcacgcctcc
aatgtgatgctcgatggggacacttgccggctgctggaccttgagaattccttattgggc
ctgccttccttctaccgatcttatttttcacaattcaggaaaatcaatacattggaaagt
gtggatgtccactgctttggccacttactgtatgaaatgacttatggacgaccgccagac
tcggtgcctgtggactccttccctcctgccccgtccatggctgtggcaagtggatttgcc
agcgtgttctgtggaactaaaatgtgtatctgttcatttcaagtggccgtgttggagtct
acgctgtcttgtgaagcctgtaaaaatggcatgcctaccatctcccggctcttacagatg
ccattattcagcgatgttttactaaccacttctgaaaaaccacagtttaagatccctaca
aagttaaaagaggcattgagaattgccaaagaatgtatagagaagagactaattgaggaa
cagaaacagaagtcaaaacgatctgctcttgaaaatagtgaagagcattcagcgaagtac
agcaactccaataattcagggatatctgcattacctccacctcctccacctccaccacca
ccagcagctcccttgcctcctgcgagcaccgaggcacctgcccagctctcgtctcaggct
gtgaatggcatgagccgaggggccttgctcagctccatccagaatttccaaaaaggaact
ttgaggaaagccaaaacctgtgatcacagtgctccgaagatcggctga

>gi568815595r:58328037_58533809|GENSCAN_predicted_peptide_2|359_aa
MAAVSGLVRRPLREVSGLLKRRFHWTAPAALQVTVRDAINQGMDEELERDEKVFLLGEEV
AQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAI
DQVINSAAKTYYMSGGLQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNS
EDAKGLIKSAIRDNNPVVVLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVV
SHSRPVGHCLEAAAVLSKEGVECEVINMRTIRPMDMETIEASVMKTNHLVTVEGGWPQFG
VGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKILEDNSIPQVKDIIFAIKKTLNI

>gi568815595r:58328037_58533809|GENSCAN_predicted_CDS_2|1080_bp
atggcggcggtgtctggcttggtgcggagaccccttcgggaggtctccgggctgctgaag
aggcgctttcactggaccgcgccggctgcgctgcaggtgacagttcgtgatgctataaat
cagggtatggatgaggagctggaaagagatgagaaggtatttctgcttggagaagaagtt
gcccagtatgatggggcatacaaggttagtcgagggctgtggaagaaatatggagacaag
aggattattgacactcccatatcagagatgggctttgctggaattgctgtaggtgcagct
atggctgggttgcggcccatttgtgaatttatgaccttcaatttctccatgcaagccatt
gaccaggttataaactcagctgccaagacctactacatgtctggtggccttcagcctgtg
cctatagtcttcagagggcccaatggtgcctcagcaggtgtagctgcccagcactcacag
tgctttgctgcctggtatgggcactgcccaggcttaaaggtggtcagtccctggaattca
gaggatgctaaaggacttattaaatcagccattcgggataacaatccagtggtggtgcta
gagaatgaattgatgtatggggttccttttgaatttcctccggaagctcagtcaaaagat
tttctgattcctattggaaaagccaaaatagaaaggcaaggaacacatataactgtggtt
tcccattcaagacctgtgggccactgcttagaagctgcagcagtgctatctaaagaagga
gttgaatgtgaggtgataaatatgcgtaccattagaccaatggacatggaaaccatagaa
gccagtgtcatgaagacaaatcatcttgtaactgtggaaggaggctggccacagtttgga
gtaggagctgaaatctgtgccaggatcatggaaggtcctgcgttcaatttcctggatgct
cctgctgttcgtgtcactggtgctgatgtccctatgccttatgcaaagattctagaggac
aactctatacctcaggtcaaagacatcatatttgcaataaagaaaacattaaatatttag

>gi568815595r:58328037_58533809|GENSCAN_predicted_peptide_3|375_aa
MGASLDQEHSGHPAGSRGVEVSSGSATVANSSGGRSIFCPNEVTLGGFLDGGRSPERPSH
DEKFGAFSSTPYPLGRLPDSGRYSQSQLPSELGEREKGKYKKTQPCGLTPYSMIQAHSQL
CVSSFPETWALEDASLEQMDNGDWGYMMTDPVTLNVGGHLYTTSLTTLTRYPDSMLGAMF
GGDFPTARDPQGNYFIDRDGPLFRYVLNFLRTSELTLPLDFKEFDLLRKEADFYQIEPLI
QCLNDPKPLYPMDTFEEVVELSSTRKLSKYSNPVAVIITQLTITTKVHSLLEGISNYFTK
WNKHMMDTRDCQVSFTFGPCDYHQEVSLRVHLMEYITKQGFTIRNTRVHHMSERANENTV
EHNWTFCRLARKTDD

>gi568815595r:58328037_58533809|GENSCAN_predicted_CDS_3|1128_bp
atgggtgcctcgctggatcaggagcacagcggacaccctgccggatccagaggggtggaa
gtcagcagcgggtctgcaacggtggcaaacagcagtggtggacggagcatcttttgtcct
aatgaggtgactcttggtgggttcctggatgggggccggtctccagaaagaccaagccat
gatgagaagtttggagcttttagctccactccctatcctctgggaaggcttccagactct
ggacggtattcccagagtcagctcccttctgaattgggagaaagagagaaaggaaaatac
aagaagacccaaccatgtggattaacaccctatagcatgatccaggcccacagccagctc
tgtgtttccagtttccctgaaacctgggctcttgaagacgcatcactggagcagatggat
aatggagactggggctatatgatgactgacccagtcacattaaatgtaggtggacacttg
tatacaacgtctctcaccacattgacgcgttacccggattccatgcttggagctatgttt
gggggggacttccccacagctcgagaccctcaaggcaattactttattgatcgagatgga
cctcttttccgatatgtcctcaacttcttaagaacttcagaattgaccttaccgttggat
tttaaggaatttgatctgcttcggaaagaagcagatttttaccagattgagcccttgatt
cagtgtctcaatgatcctaagcctttgtatcccatggatacttttgaagaagttgtggag
ctgtctagtactcggaagctttctaagtactccaacccagtggctgtcatcataacgcaa
ctaaccatcaccactaaggtccattccttactagaaggcatctcaaattattttaccaag
tggaataagcacatgatggacaccagagactgccaggtttcctttacttttggaccctgt
gattatcaccaggaagtttctcttagggtccacctgatggaatacattacaaaacaaggt
ttcacgatccgcaacacccgggtgcatcacatgagtgagcgggccaatgaaaacacagtg
gagcacaactggactttctgtaggctagcccggaagacagacgactga

>gi568815595r:58328037_58533809|GENSCAN_predicted_peptide_4|600_aa
PTDERGELPASTAGSWAPLHTALMPKSSDPPRSSFTGTYLQGLETEATYDAATQEFVIHS
PTLTATKWWPGDLGRSATHALVQAQLICSGARRGMHAFIVPIRSLQDHTPLPGIIIGDIG
PKMDFDQTDNGFLQLNHVRVPRENMLSRFAQVLPDGTYVKLGTAQSNYLPMVVVRVELLS
GEILPILQKACVIAMRYSVIRRQSRLRPRQGNLGCKSSLEDRATGKKGLLLLSCPRPIYL
GCRSVPRVVIRKMRQVFMVSGIGEGGHNSDPEAKVLDYQTQQQKLFPQLAISYAFHFLAV
SLLEFFQHSYTAILNQDFSFLPELHALSTGMKAMMSEFCTQGAEMCRRACGGHGYSKLSG
LPSLVTKLSASCTYEGENTVLYLQVARFLVKSYLQTQMSPGSTPQRSLSPSVAYLTAPDL
ARCPAQRAADFLCPELYTTAWAHVAVRLIKDSVQHLQTLTQSGADQHEAWNQTTVIHLQA
AKVHCYYVTVKGFTEALEKLENEPAIQQVLKRLCDLHAIHGILTNSGDFLHDAFLSGAQV
DMARTAYLDLLRLIRKDAILLTDAFDFTDQCLNSALGCYDGNVYERLFQWAQKSPTNTQK

>gi568815595r:58328037_58533809|GENSCAN_predicted_CDS_4|1803_bp
cccacagatgaaaggggagaactgcctgcaagtacagctgggagctgggccccactccat
actgcgctgatgcctaagagttcagacccacctagaagcagcttcacagggacatatctt
cagggcctggagactgaagccacctatgacgcagccacccaggagtttgtgatacacagc
cccacgctgactgccaccaaatggtggcctggagacttgggacggtcagccacccatgcc
ctggtccaggcccagctgatctgctcaggagccaggcggggcatgcacgcttttattgtg
ccaatccggagtcttcaggaccacaccccactgccaggaatcatcattggggacatcgga
cccaagatggactttgatcaaacagacaatggcttcctgcagctgaaccatgtgcgggtc
cccagggagaacatgctgagtcgctttgcacaggtcttgccagatggcacctacgtcaaa
ctcggtacagcacagagcaactaccttcccatggtggtggtgcgggtggagctgctgtca
ggggagatcctccctatactgcagaaggcctgtgtcatcgccatgcgctactcggtcatc
cgccgccaatcccggctccggcccaggcaagggaatctgggctgcaagagttctctggag
gacagggccactgggaagaaggggcttctgctgctgtcctgcccgaggcccatttatctg
ggctgcagaagtgtccccagggtggttataagaaagatgcgccaggtttttatggtgtcg
gggataggggaaggtggacacaacagtgacccagaggcaaaggtcctggactaccagaca
caacagcagaaactctttcctcagctggccatcagttatgccttccatttcctggcagtc
agcctcttggagttcttccagcactcctacactgccattctgaaccaagacttcagcttc
ctgcctgagctccacgcactgagcacgggcatgaaggccatgatgtcagaattctgcacc
cagggagctgagatgtgccgcagggcctgtggcggacatggctactcaaagctgagtggc
ctgccatcactggtcaccaaattgtcggcctcctgtacctacgagggtgagaacacagtg
ctctacctgcaggtggccaggttcctggtgaagagctacctgcagactcagatgtcccct
ggctccacgccacagagatctctctctccatctgtcgcatatctcaccgcacctgacctg
gccaggtgtccagcccagagggcagccgacttcctctgcccggagctctacaccacggcc
tgggcacatgtggcagtaaggctcataaaggactcagtgcagcatttacagaccctgacg
caatccggagctgaccagcacgaggcttggaaccagaccactgtcatacacctccaggct
gctaaggtgcactgctactatgtcactgtgaagggttttacagaagctctggagaaacta
gaaaatgaaccagcgattcagcaggtgctcaagcgcctctgtgacctccatgccatacat
ggaatcttgactaactcgggtgactttctccatgacgccttcctgtctggtgcccaagtg
gacatggcaagaacagcctacctggacctgctccgcctgatccggaaggatgccatcctg
ttaactgatgcttttgacttcaccgatcagtgtttaaattcagcacttggctgttatgat
ggaaacgtctacgaacgcctgttccagtgggctcagaagtcaccaaccaatactcagaaa
taa