Result of FASTA (ccds) for pF1KE0010
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0010, 770 aa
  1>>>pF1KE0010 770 - 770 aa - 770 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.5083+/-0.00106; mu= -6.6664+/- 0.063
 mean_var=365.7890+/-74.418, 0's: 0 Z-trim(114.5): 27  B-trim: 0 in 0/53
 Lambda= 0.067059
 statistics sampled from 15017 (15033) to 15017 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.766), E-opt: 0.2 (0.462), width:  16
 Scan time:  4.320

The best scores are:                                      opt bits E(32554)
CCDS44613.1 PATL1 gene_id:219988|Hs108|chr11       ( 770) 5188 516.3 7.4e-146
CCDS45253.1 PATL2 gene_id:197135|Hs108|chr15       ( 543)  655 77.6 5.8e-14
CCDS81873.1 PATL2 gene_id:197135|Hs108|chr15       ( 354)  575 69.7   9e-12


>>CCDS44613.1 PATL1 gene_id:219988|Hs108|chr11            (770 aa)
 initn: 5188 init1: 5188 opt: 5188  Z-score: 2732.1  bits: 516.3 E(32554): 7.4e-146
Smith-Waterman score: 5188; 99.9% identity (100.0% similar) in 770 aa overlap (1-770:1-770)

               10        20        30        40        50        60
pF1KE0 MFRYESLEDCPLDEDEDAFQGLGEEDEEIDQFNDDTFGSGAVDDDWQEAHERLAELEEKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MFRYESLEDCPLDEDEDAFQGLGEEDEEIDQFNDDTFGSGAVDDDWQEAHERLAELEEKL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 PVAVNEQTGNGERDEMDLLGDHEENLAERLSKMVIENELEDPAIMRAVQTRPVLQPQPGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 PVAVNEQTGNGERDEMDLLGDHEENLAERLSKMVIENELEDPAIMRAVQTRPVLQPQPGS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 LNSSIWDGSEVLRRIRGPLLAQEMPTVSVLEYALPQRPPQGPEDDRDLSERALPRRSTSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LNSSIWDGSEVLRRIRGPLLAQEMPTVSVLEYALPQRPPQGPEDDRDLSERALPRRSTSP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 IIGSPPVRAVPIGTPPKQMAVPSFTQQILCPKPVHVRPPMPPRYPAPYGERMSPNQLCSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 IIGSPPVRAVPIGTPPKQMAVPSFTQQILCPKPVHVRPPMPPRYPAPYGERMSPNQLCSV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 PNSSLLGHPFPPSVPPVLSPLQRAQLLGGAQLQPGRMSPSQFARVPGFVGSPLAAMNPKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 PNSSLLGHPFPPSVPPVLSPLQRAQLLGGAQLQPGRMSPSQFARVPGFVGSPLAAMNPKL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 LQGRVGQMLPPAPGFRAFFSAPPSATPPPQQHPPGPGPHLQNLRSQAPMFRPDTTHLHPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LQGRVGQMLPPAPGFRAFFSAPPSATPPPQQHPPGPGPHLQNLRSQAPMFRPDTTHLHPQ
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 HRRLLHQRQQQNRSQHRNLNGAGDRGSHRSSHQDHLRKDPYANLMLQREKDWVSKIQMMQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 HRRLLHQRQQQNRSQHRNLNGAGDRGSHRSSHQDHLRKDPYANLMLQREKDWVSKIQMMQ
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE0 LQSTDPYLDDFYYQNYFEKLEKLSAAEEIQGDGPKKERTKLITPQVAKLEHAYKPVQFEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LQSTDPYLDDFYYQNYFEKLEKLSAAEEIQGDGPKKERTKLITPQVAKLEHAYKPVQFEG
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE0 SLGKLTVSSVNNPRKMIDAVVTSRSEDDETKEKQVRDKRRKTLVIIEKTYSLLLDVEDYE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 SLGKLTVSSVNNPRKMIDAVVTSRSEDDETKEKQVRDKRRKTLVIIEKTYSLLLDVEDYE
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE0 RRYLLSLEEERPALMDDRKHKICSMYDNLRGKLPGQERPSDDHFVQIMCIRKGKRMVARI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 RRYLLSLEEERPALMDDRKHKICSMYDNLRGKLPGQERPSDDHFVQIMCIRKGKRMVARI
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE0 LPFLSTEQAADILMTTARNLPFLIKKDAQDEVLPCLLSPFSLLLYHLPSVSITSLLRQLM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LPFLSTEQAADILMTTARNLPFLIKKDAQDEVLPCLLSPFSLLLYHLPSVSITSLLRQLM
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KE0 NLPQSAATPALSNPHLTAVLQNKFGLSLLLILLSRGEDLQSSDPATESTQNNQWTEVMFM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 NLPQSAATPALSNPHLTAVLQNKFGLSLLLILLSRGEDLQSSDPATESTQNNQWTEVMFM
              670       680       690       700       710       720

              730       740       750       760       770
pF1KE0 ATRELLRIPQAALARPISIPTNLVSLFSRYVDRQKLNLLETKLQLVQGIR
       ::::::::::::::.:::::::::::::::::::::::::::::::::::
CCDS44 ATRELLRIPQAALAKPISIPTNLVSLFSRYVDRQKLNLLETKLQLVQGIR
              730       740       750       760       770

>>CCDS45253.1 PATL2 gene_id:197135|Hs108|chr15            (543 aa)
 initn: 843 init1: 381 opt: 655  Z-score: 364.1  bits: 77.6 E(32554): 5.8e-14
Smith-Waterman score: 944; 34.0% identity (65.5% similar) in 527 aa overlap (246-765:46-539)

         220       230       240       250       260       270     
pF1KE0 VRPPMPPRYPAPYGERMSPNQLCSVPNSSLLGHPFPPSVPPVLSPLQRAQLLGGAQLQPG
                                     :   . :..    . :    .::...    
CCDS45 SEEELVSACQLEKEEENEGEEEEEEEDEEDLDPDLDPDLEEEENDLGDPAVLGAVHNTQR
          20        30        40        50        60        70     

         280       290       300       310       320       330     
pF1KE0 RMSPSQFARVPGFVGSPLAAMNPKLLQGRVGQMLPPAPGFRAFFSAPPSATPPPQQH-P-
        .  :  ...::..:  ::...   .  .. ..: : :    :. . ::.. : :.  : 
CCDS45 ALLSSPGVKAPGMLGMSLASLH---FLWQTLDYLSPIP----FWPTFPSTSSPAQHFGPR
          80        90          100       110           120        

            340         350       360       370       380       390
pF1KE0 -PGPGPHL--QNLRSQAPMFRPDTTHLHPQHRRLLHQRQQQNRSQHRNLNGAGDRGSHRS
        :.: : :  . : :  : :    :.:::.:.:.:   :::..::           :  .
CCDS45 LPSPDPTLFCSLLTSWPPRFS-HLTQLHPRHQRIL---QQQQHSQ---------TPSPPA
      130       140        150       160                   170     

              400       410       420       430       440       450
pF1KE0 SHQDHLRKDPYANLMLQREKDWVSKIQMMQLQSTDPYLDDFYYQNYFEKLEKLSAAEEIQ
       ..    . ::::::: ..::::: :.::.::::. : :::.:::.:..:::: .: ::. 
CCDS45 KKPWSQQPDPYANLMTRKEKDWVIKVQMVQLQSAKPRLDDYYYQEYYQKLEKKQADEELL
         180       190       200       210       220       230     

              460       470       480       490       500       510
pF1KE0 GDGPKKERTKLITPQVAKLEHAYKPVQFEGSLGKLTVSSVNNPRKMIDAVVTSRSEDDET
       :   . :  ::.:: . : :   . :..:::::...::.  .::. ::::  . .:.:  
CCDS45 GRRNRVESLKLVTPYIPKAEAYESVVRIEGSLGQVAVSTCFSPRRAIDAVPHGTQEQDI-
         240       250       260       270       280       290     

              520       530       540       550       560       570
pF1KE0 KEKQVRDKRRKTLVIIEKTYSLLLDVEDYERRYLLSLEEERPALMDDRKHKICSMYDNLR
         . . ..: ..:  ::: .  ::..:.  .      .   : . ....... .....:.
CCDS45 --EAASSQRLRVLYRIEKMFLQLLEIEEGWKY-----RPPPPCFSEQQSNQVEKLFQTLK
            300       310       320            330       340       

              580       590       600       610       620       630
pF1KE0 GKLPGQERPSDDHFVQIMCIRKGKRMVARILPFLSTEQAADILMTTARNLPFLIKKDAQD
        .  .. . . : :.:.. .:::: .:::.::::  .::. ::.. ...::.:...:. :
CCDS45 TQEQNNLEEAADGFLQVLSVRKGKALVARLLPFLPQDQAVTILLAITHHLPLLVRRDVAD
       350       360       370       380       390       400       

              640       650       660       670       680       690
pF1KE0 EVLPCLLSPFSLLLYHLPSVSITSLLRQLMNLPQSAATPALSNPHLTAVLQNKFGLSLLL
       ..:  :..:..  . ::   ..  ::. :..:  .   :. :.  .:.::::.::.::: 
CCDS45 QALQMLFKPLGKCISHL---TLHELLQGLQGL--TLLPPGSSERPVTVVLQNQFGISLLY
       410       420          430         440       450       460  

              700         710       720       730       740        
pF1KE0 ILLSRGEDLQSSDPATE--STQNNQWTEVMFMATRELLRIPQAALARPISIPTNLVSLFS
        :::.::.: :   . :  ..... ::... . . :. ..: :.::.:...:.::. :: 
CCDS45 ALLSHGEQLVSLHSSLEEPNSDHTAWTDMVVLIAWEIAQMPTASLAEPLAFPSNLLPLFC
            470       480       490       500       510       520  

      750       760       770
pF1KE0 RYVDRQKLNLLETKLQLVQGIR
       ..::.: .. ::.....     
CCDS45 HHVDKQLVQQLEARMEFAWIY 
            530       540    

>>CCDS81873.1 PATL2 gene_id:197135|Hs108|chr15            (354 aa)
 initn: 744 init1: 338 opt: 575  Z-score: 324.8  bits: 69.7 E(32554): 9e-12
Smith-Waterman score: 794; 36.4% identity (71.3% similar) in 363 aa overlap (405-765:1-350)

          380       390       400       410       420       430    
pF1KE0 QHRNLNGAGDRGSHRSSHQDHLRKDPYANLMLQREKDWVSKIQMMQLQSTDPYLDDFYYQ
                                     : ..::::: :.::.::::. : :::.:::
CCDS81                               MTRKEKDWVIKVQMVQLQSAKPRLDDYYYQ
                                             10        20        30

          440       450       460       470       480       490    
pF1KE0 NYFEKLEKLSAAEEIQGDGPKKERTKLITPQVAKLEHAYKPVQFEGSLGKLTVSSVNNPR
       .:..:::: .: ::. :   . :  ::.:: . : :   . :..:::::...::.  .::
CCDS81 EYYQKLEKKQADEELLGRRNRVESLKLVTPYIPKAEAYESVVRIEGSLGQVAVSTCFSPR
               40        50        60        70        80        90

          500       510       520       530       540       550    
pF1KE0 KMIDAVVTSRSEDDETKEKQVRDKRRKTLVIIEKTYSLLLDVEDYERRYLLSLEEERPAL
       . ::::  . .:.:    . . ..: ..:  ::: .  ::..:.  .      .   : .
CCDS81 RAIDAVPHGTQEQDI---EAASSQRLRVLYRIEKMFLQLLEIEEGWKY-----RPPPPCF
              100          110       120       130            140  

          560       570       580       590       600       610    
pF1KE0 MDDRKHKICSMYDNLRGKLPGQERPSDDHFVQIMCIRKGKRMVARILPFLSTEQAADILM
        ....... .....:. .  .. . . : :.:.. .:::: .:::.::::  .::. ::.
CCDS81 SEQQSNQVEKLFQTLKTQEQNNLEEAADGFLQVLSVRKGKALVARLLPFLPQDQAVTILL
            150       160       170       180       190       200  

          620       630       640       650       660       670    
pF1KE0 TTARNLPFLIKKDAQDEVLPCLLSPFSLLLYHLPSVSITSLLRQLMNLPQSAATPALSNP
       . ...::.:...:. :..:  :..:..  . ::   ..  ::. :..:  .   :. :. 
CCDS81 AITHHLPLLVRRDVADQALQMLFKPLGKCISHL---TLHELLQGLQGL--TLLPPGSSER
            210       220       230          240         250       

          680       690       700         710       720       730  
pF1KE0 HLTAVLQNKFGLSLLLILLSRGEDLQSSDPATE--STQNNQWTEVMFMATRELLRIPQAA
        .:.::::.::.:::  :::.::.: :   . :  ..... ::... . . :. ..: :.
CCDS81 PVTVVLQNQFGISLLYALLSHGEQLVSLHSSLEEPNSDHTAWTDMVVLIAWEIAQMPTAS
       260       270       280       290       300       310       

            740       750       760       770
pF1KE0 LARPISIPTNLVSLFSRYVDRQKLNLLETKLQLVQGIR
       ::.:...:.::. :: ..::.: .. ::.....     
CCDS81 LAEPLAFPSNLLPLFCHHVDKQLVQQLEARMEFAWIY 
       320       330       340       350     




770 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 08:28:22 2016 done: Fri Nov  4 08:28:22 2016
 Total Scan time:  4.320 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]
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