Result of FASTA (ccds) for pF1KB8956
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8956, 333 aa
  1>>>pF1KB8956 333 - 333 aa - 333 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.1248+/-0.000724; mu= 9.6800+/- 0.044
 mean_var=155.4916+/-32.222, 0's: 0 Z-trim(114.8): 167  B-trim: 853 in 1/49
 Lambda= 0.102854
 statistics sampled from 15163 (15338) to 15163 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.787), E-opt: 0.2 (0.471), width:  16
 Scan time:  2.340

The best scores are:                                      opt bits E(32554)
CCDS3410.1 2 gene_id:579|Hs108|chr4                ( 333) 2213 339.5 2.3e-93
CCDS41558.1 3 gene_id:159296|Hs108|chr10           ( 364)  384 68.1 1.2e-11
CCDS59095.1 1 gene_id:4824|Hs108|chr8              ( 159)  367 65.3 3.9e-11
CCDS6042.1 1 gene_id:4824|Hs108|chr8               ( 234)  367 65.4 5.1e-11
CCDS41575.1 HMX3 gene_id:340784|Hs108|chr10        ( 357)  368 65.7 6.3e-11
CCDS4387.1 5 gene_id:1482|Hs108|chr5               ( 324)  364 65.1 8.9e-11


>>CCDS3410.1 2 gene_id:579|Hs108|chr4                     (333 aa)
 initn: 2213 init1: 2213 opt: 2213  Z-score: 1789.6  bits: 339.5 E(32554): 2.3e-93
Smith-Waterman score: 2213; 100.0% identity (100.0% similar) in 333 aa overlap (1-333:1-333)

               10        20        30        40        50        60
pF1KB8 MAVRGANTLTSFSIQAILNKKEERGGLAAPEGRPAPGGTAASVAAAPAVCCWRLFGERDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MAVRGANTLTSFSIQAILNKKEERGGLAAPEGRPAPGGTAASVAAAPAVCCWRLFGERDA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 GALGGAEDSLLASPAGTRTAAGRTAESPEGWDSDSALSEENESRRRCADARGASGAGLAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GALGGAEDSLLASPAGTRTAAGRTAESPEGWDSDSALSEENESRRRCADARGASGAGLAG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 GSLSLGQPVCELAASKDLEEEAAGRSDSEMSASVSGDRSPRTEDDGVGPRGAHVSALCSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GSLSLGQPVCELAASKDLEEEAAGRSDSEMSASVSGDRSPRTEDDGVGPRGAHVSALCSG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 AGGGGGSGPAGVAEEEEEPAAPKPRKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 AGGGGGSGPAGVAEEEEEPAAPKPRKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 ASLKLTETQVKIWFQNRRYKTKRRQMAADLLASAPAAKKVAVKVLVRDDQRQYLPGEVLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 ASLKLTETQVKIWFQNRRYKTKRRQMAADLLASAPAAKKVAVKVLVRDDQRQYLPGEVLR
              250       260       270       280       290       300

              310       320       330   
pF1KB8 PPSLLPLQPSYYYPYYCLPGWALSTCAAAAGTQ
       :::::::::::::::::::::::::::::::::
CCDS34 PPSLLPLQPSYYYPYYCLPGWALSTCAAAAGTQ
              310       320       330   

>>CCDS41558.1 3 gene_id:159296|Hs108|chr10                (364 aa)
 initn: 295 init1: 295 opt: 384  Z-score: 322.4  bits: 68.1 E(32554): 1.2e-11
Smith-Waterman score: 384; 49.0% identity (68.7% similar) in 147 aa overlap (190-330:131-274)

     160       170       180       190       200        210        
pF1KB8 PRTEDDGVGPRGAHVSALCSGAGGGGGSGPAGVAEEEEEPAAPKPRKKRS-RAAFSHAQV
                                     ::  .  ::   ::::..:. :. ::.:::
CCDS41 CSEPKEHEEEPEVVRDRSQKSCQLKKSLETAGDCKAAEESERPKPRSRRKPRVLFSQAQV
              110       120       130       140       150       160

      220       230       240       250       260       270        
pF1KB8 FELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTKRRQMAADLLASA----
       :::::::..:::::.:::  ::.::::: ::::::::::::: ::...  .:  .:    
CCDS41 FELERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQNRRYKCKRQRQDKSLELGAHAPP
              170       180       190       200       210       220

          280       290        300       310       320       330   
pF1KB8 PAAKKVAVKVLVRDDQRQYLPG-EVLRPPSLLPLQPSYYYPYYCLPGWALSTCAAAAGTQ
       :  ..::: ::::: .    :. ..   :  .  .    : :  .:... .. ::::   
CCDS41 PPPRRVAVPVLVRDGKPCVTPSAQAYGAPYSVGASA---YSYNSFPAYGYGNSAAAAAAA
              230       240       250          260       270       

CCDS41 AAAAAAAAAYSSSYGCAYPAGGGGGGGGTSAATTAMQPACSAAGGGPFVNVSNLGGFGSG
       280       290       300       310       320       330       

>>CCDS59095.1 1 gene_id:4824|Hs108|chr8                   (159 aa)
 initn: 440 init1: 355 opt: 367  Z-score: 313.5  bits: 65.3 E(32554): 3.9e-11
Smith-Waterman score: 392; 53.2% identity (72.2% similar) in 126 aa overlap (199-322:42-155)

      170       180       190       200       210       220        
pF1KB8 PRGAHVSALCSGAGGGGGSGPAGVAEEEEEPAAPKPRKKRSRAAFSHAQVFELERRFNHQ
                                     : .::  .:::::::::.::.::::.:.::
CCDS59 AETLAETEPERHLGSYLLDSENTSGALPRLPQTPKQPQKRSRAAFSHTQVIELERKFSHQ
              20        30        40        50        60        70 

      230       240       250       260       270       280        
pF1KB8 RYLSGPERADLAASLKLTETQVKIWFQNRRYKTKRRQMAADLLASAPAAKKVAVKVLVRD
       .:::.:::: :: .:::::::::::::::::::::.:....:              : . 
CCDS59 KYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLSSELGD------------LEKH
              80        90       100       110                     

      290       300       310         320       330   
pF1KB8 DQRQYLPGEVLRPPSLLPLQPSY-YYPY-YCLPGWALSTCAAAAGTQ
       ..   :  :..   ::. .  :: :::: ::. .:.           
CCDS59 SSLPALKEEAFSRASLVSVYNSYPYYPYLYCVGSWSPAFW       
     120       130       140       150                

>>CCDS6042.1 1 gene_id:4824|Hs108|chr8                    (234 aa)
 initn: 480 init1: 355 opt: 367  Z-score: 311.2  bits: 65.4 E(32554): 5.1e-11
Smith-Waterman score: 396; 39.6% identity (62.3% similar) in 212 aa overlap (136-322:32-230)

         110       120       130       140       150       160     
pF1KB8 RCADARGASGAGLAGGSLSLGQPVCELAASKDLEEEAAGRSDSEMSASVSGDRSPRTEDD
                                     .:. ...: :. .. :.. . :  :. : .
CCDS60 LRVPEPRPGEAKAEGAAPPTPSKPLTSFLIQDILRDGAQRQGGRTSSQRQRDPEPEPEPE
              10        20        30        40        50        60 

         170          180       190                           200  
pF1KB8 GVGPR---GAHVSALCSGAGGGGGSGPAGVAEEEEE--------------------PAAP
         : :   ::. . : .:  ..   . . .:: : :                    : .:
CCDS60 PEGGRSRAGAQNDQLSTGPRAAPEEAET-LAETEPERHLGSYLLDSENTSGALPRLPQTP
              70        80         90       100       110       120

            210       220       230       240       250       260  
pF1KB8 KPRKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTK
       :  .:::::::::.::.::::.:.::.:::.:::: :: .::::::::::::::::::::
CCDS60 KQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTK
              130       140       150       160       170       180

            270       280       290       300       310         320
pF1KB8 RRQMAADLLASAPAAKKVAVKVLVRDDQRQYLPGEVLRPPSLLPLQPSY-YYPY-YCLPG
       :.:....:   .   :. .. .: .         :..   ::. .  :: :::: ::. .
CCDS60 RKQLSSEL---GDLEKHSSLPALKE---------EAFSRASLVSVYNSYPYYPYLYCVGS
                 190       200                210       220        

              330   
pF1KB8 WALSTCAAAAGTQ
       :.           
CCDS60 WSPAFW       
      230           

>>CCDS41575.1 HMX3 gene_id:340784|Hs108|chr10             (357 aa)
 initn: 375 init1: 271 opt: 368  Z-score: 309.6  bits: 65.7 E(32554): 6.3e-11
Smith-Waterman score: 368; 33.0% identity (55.5% similar) in 330 aa overlap (10-319:29-346)

                                  10        20        30           
pF1KB8                    MAVRGANTLTSFSIQAILNKKEERGGLAAPEGRPAP-----
                                   . :::. .::  ..:     :. .: :     
CCDS41 MPEPGPDAAGTASAQPQPPPPPPPAPKESPFSIKNLLNGDHHR---PPPKPQPPPRTLFA
               10        20        30        40           50       

         40        50        60         70            80           
pF1KB8 GGTAASVAAAPAVCCWRLFGERDAG-ALGGAEDSLLASP----AGTRTA--AGRTAESPE
        ..::..::: :.   .   :  :: ::. . :  :: :     . : :  :    .:: 
CCDS41 PASAAAAAAAAAAAAAKGALEGAAGFALSQVGD--LAFPRFEIPAQRFALPAHYLERSPA
        60        70        80        90         100       110     

      90       100       110       120       130       140         
pF1KB8 GWDSDSALSEENESRRRCADARGASGAGLAGGSLSLGQPVCELAASKDLEEEAAGRSDSE
        :   .     ..  :  :. ..    .  ... .  .:   : :. : ..:  ..: .:
CCDS41 WWYPYTLTPAGGHLPRPEASEKALLRDSSPASGTDRDSPEPLLKADPD-HKELDSKSPDE
         120       130       140       150       160        170    

     150       160        170       180       190       200        
pF1KB8 MSASVSGDRSPRTEDDGV-GPRGAHVSALCSGAGGGGGSGPAGVAEEEEEPAAPKPRKKR
       .    : ..  . : ... :  :: :.:  ..:  :. .   :.   :..::    :::.
CCDS41 IILEESDSEESKKEGEAAPGAAGASVGA--AAATPGAEDWKKGAESPEKKPAC---RKKK
          180       190       200         210       220            

      210       220       230       240       250       260        
pF1KB8 SRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTKRRQMAA
       .:..::..:::.::  :. .::::. ::: :::::.:::::::::::::: : :: :.::
CCDS41 TRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKR-QLAA
     230       240       250       260       270       280         

      270           280       290       300       310          320 
pF1KB8 DL----LASAPAAKKVAVKVLVRDDQRQYLPGEVLRPPSLLPLQPSYYYP---YYCLPGW
       .:    :. : : . : : .: ....     . .     .   ::   .:   ::  :  
CCDS41 ELEAANLSHAAAQRIVRVPILYHENSAAEGAAAAAAGAPVPVSQPLLTFPHPVYYSHPVV
      290       300       310       320       330       340        

             330   
pF1KB8 ALSTCAAAAGTQ
                   
CCDS41 SSVPLLRPV   
      350          

>>CCDS4387.1 5 gene_id:1482|Hs108|chr5                    (324 aa)
 initn: 364 init1: 265 opt: 364  Z-score: 307.0  bits: 65.1 E(32554): 8.9e-11
Smith-Waterman score: 364; 46.9% identity (65.7% similar) in 143 aa overlap (194-327:123-265)

           170       180       190       200       210          220
pF1KB8 DDGVGPRGAHVSALCSGAGGGGGSGPAGVAEEEEEPAAPKPRKKRSRAA---FSHAQVFE
                                     :. :   : .:: .: :     ::.:::.:
CCDS43 YPRAYSDPDPAKDPRAEKKELCALQKAVELEKTEADNAERPRARRRRKPRVLFSQAQVYE
            100       110       120       130       140       150  

              230       240       250       260         270        
pF1KB8 LERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTKR-RQ-MAADLLA----SA
       :::::..:::::.::: .::. :::: ::::::::::::: :: :: .. .:..      
CCDS43 LERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKCKRQRQDQTLELVGLPPPPP
            160       170       180       190       200       210  

          280       290       300       310       320       330    
pF1KB8 PAAKKVAVKVLVRDDQRQYLPGEVLRPPSLLPLQPSYYYPYYCLPGWALSTCAAAAGTQ 
       : :...:: ::::: .     .    :   . :.:  :  :   ::.. ..:.       
CCDS43 PPARRIAVPVLVRDGKPCLGDSAPYAPAYGVGLNPYGYNAYPAYPGYGGAACSPGYSCTA
            220       230       240       250       260       270  

CCDS43 AYPAGPSPAQPATAAANNNFVNFGVGDLNAVQSPGIPQSNSGVSTLHGIRAW
            280       290       300       310       320    




333 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 00:48:30 2016 done: Sat Nov  5 00:48:30 2016
 Total Scan time:  2.340 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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