Result of FASTA (omim) for pF1KB6434
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6434, 344 aa
  1>>>pF1KB6434 344 - 344 aa - 344 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2311+/-0.000358; mu= 16.4348+/- 0.022
 mean_var=65.7030+/-13.416, 0's: 0 Z-trim(112.8): 17  B-trim: 0 in 0/54
 Lambda= 0.158227
 statistics sampled from 21790 (21800) to 21790 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.624), E-opt: 0.2 (0.256), width:  16
 Scan time:  7.990

The best scores are:                                      opt bits E(85289)
NP_060037 (OMIM: 606828) N-acetyl-D-glucosamine ki ( 390) 2311 536.5 3.6e-152
NP_001317355 (OMIM: 606828) N-acetyl-D-glucosamine ( 293) 1979 460.6 1.9e-129
XP_005264472 (OMIM: 606828) PREDICTED: N-acetyl-D- ( 293) 1979 460.6 1.9e-129
XP_011531259 (OMIM: 606828) PREDICTED: N-acetyl-D- ( 293) 1979 460.6 1.9e-129
NP_001317354 (OMIM: 606828) N-acetyl-D-glucosamine ( 293) 1979 460.6 1.9e-129
XP_005264470 (OMIM: 606828) PREDICTED: N-acetyl-D- ( 293) 1979 460.6 1.9e-129
XP_016859929 (OMIM: 606828) PREDICTED: N-acetyl-D- ( 263) 1299 305.4   9e-83


>>NP_060037 (OMIM: 606828) N-acetyl-D-glucosamine kinase  (390 aa)
 initn: 2311 init1: 2311 opt: 2311  Z-score: 2852.9  bits: 536.5 E(85289): 3.6e-152
Smith-Waterman score: 2311; 100.0% identity (100.0% similar) in 344 aa overlap (1-344:47-390)

                                             10        20        30
pF1KB6                               MAAIYGGVEGGGTRSEVLLVSEDGKILAEA
                                     ::::::::::::::::::::::::::::::
NP_060 SGAVPRQLEGRRCQAGRDANGGTSSDGSSSMAAIYGGVEGGGTRSEVLLVSEDGKILAEA
         20        30        40        50        60        70      

               40        50        60        70        80        90
pF1KB6 DGLSTNHWLIGTDKCVERINEMVNRAKRKAGVDPLVPLRSLGLSLSGGDQEDAGRILIEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 DGLSTNHWLIGTDKCVERINEMVNRAKRKAGVDPLVPLRSLGLSLSGGDQEDAGRILIEE
         80        90       100       110       120       130      

              100       110       120       130       140       150
pF1KB6 LRDRFPYLSESYLITTDAAGSIATATPDGGVVLISGTGSNCRLINPDGSESGCGGWGHMM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 LRDRFPYLSESYLITTDAAGSIATATPDGGVVLISGTGSNCRLINPDGSESGCGGWGHMM
        140       150       160       170       180       190      

              160       170       180       190       200       210
pF1KB6 GDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGYVKQAMFHYFQVPDRLGILTHLYRDFDK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 GDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGYVKQAMFHYFQVPDRLGILTHLYRDFDK
        200       210       220       230       240       250      

              220       230       240       250       260       270
pF1KB6 CRFAGFCRKIAEGAQQGDPLSRYIFRKAGEMLGRHIVAVLPEIDPVLFQGKIGLPILCVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 CRFAGFCRKIAEGAQQGDPLSRYIFRKAGEMLGRHIVAVLPEIDPVLFQGKIGLPILCVG
        260       270       280       290       300       310      

              280       290       300       310       320       330
pF1KB6 SVWKSWELLKEGFLLALTQGREIQAQNFFSSFTLMKLRHSSALGGASLGARHIGHLLPMD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 SVWKSWELLKEGFLLALTQGREIQAQNFFSSFTLMKLRHSSALGGASLGARHIGHLLPMD
        320       330       340       350       360       370      

              340    
pF1KB6 YSANAIAFYSYTFS
       ::::::::::::::
NP_060 YSANAIAFYSYTFS
        380       390

>>NP_001317355 (OMIM: 606828) N-acetyl-D-glucosamine kin  (293 aa)
 initn: 1979 init1: 1979 opt: 1979  Z-score: 2445.2  bits: 460.6 E(85289): 1.9e-129
Smith-Waterman score: 1979; 100.0% identity (100.0% similar) in 293 aa overlap (52-344:1-293)

              30        40        50        60        70        80 
pF1KB6 EDGKILAEADGLSTNHWLIGTDKCVERINEMVNRAKRKAGVDPLVPLRSLGLSLSGGDQE
                                     ::::::::::::::::::::::::::::::
NP_001                               MVNRAKRKAGVDPLVPLRSLGLSLSGGDQE
                                             10        20        30

              90       100       110       120       130       140 
pF1KB6 DAGRILIEELRDRFPYLSESYLITTDAAGSIATATPDGGVVLISGTGSNCRLINPDGSES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DAGRILIEELRDRFPYLSESYLITTDAAGSIATATPDGGVVLISGTGSNCRLINPDGSES
               40        50        60        70        80        90

             150       160       170       180       190       200 
pF1KB6 GCGGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGYVKQAMFHYFQVPDRLGIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GCGGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGYVKQAMFHYFQVPDRLGIL
              100       110       120       130       140       150

             210       220       230       240       250       260 
pF1KB6 THLYRDFDKCRFAGFCRKIAEGAQQGDPLSRYIFRKAGEMLGRHIVAVLPEIDPVLFQGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 THLYRDFDKCRFAGFCRKIAEGAQQGDPLSRYIFRKAGEMLGRHIVAVLPEIDPVLFQGK
              160       170       180       190       200       210

             270       280       290       300       310       320 
pF1KB6 IGLPILCVGSVWKSWELLKEGFLLALTQGREIQAQNFFSSFTLMKLRHSSALGGASLGAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IGLPILCVGSVWKSWELLKEGFLLALTQGREIQAQNFFSSFTLMKLRHSSALGGASLGAR
              220       230       240       250       260       270

             330       340    
pF1KB6 HIGHLLPMDYSANAIAFYSYTFS
       :::::::::::::::::::::::
NP_001 HIGHLLPMDYSANAIAFYSYTFS
              280       290   

>>XP_005264472 (OMIM: 606828) PREDICTED: N-acetyl-D-gluc  (293 aa)
 initn: 1979 init1: 1979 opt: 1979  Z-score: 2445.2  bits: 460.6 E(85289): 1.9e-129
Smith-Waterman score: 1979; 100.0% identity (100.0% similar) in 293 aa overlap (52-344:1-293)

              30        40        50        60        70        80 
pF1KB6 EDGKILAEADGLSTNHWLIGTDKCVERINEMVNRAKRKAGVDPLVPLRSLGLSLSGGDQE
                                     ::::::::::::::::::::::::::::::
XP_005                               MVNRAKRKAGVDPLVPLRSLGLSLSGGDQE
                                             10        20        30

              90       100       110       120       130       140 
pF1KB6 DAGRILIEELRDRFPYLSESYLITTDAAGSIATATPDGGVVLISGTGSNCRLINPDGSES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DAGRILIEELRDRFPYLSESYLITTDAAGSIATATPDGGVVLISGTGSNCRLINPDGSES
               40        50        60        70        80        90

             150       160       170       180       190       200 
pF1KB6 GCGGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGYVKQAMFHYFQVPDRLGIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GCGGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGYVKQAMFHYFQVPDRLGIL
              100       110       120       130       140       150

             210       220       230       240       250       260 
pF1KB6 THLYRDFDKCRFAGFCRKIAEGAQQGDPLSRYIFRKAGEMLGRHIVAVLPEIDPVLFQGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 THLYRDFDKCRFAGFCRKIAEGAQQGDPLSRYIFRKAGEMLGRHIVAVLPEIDPVLFQGK
              160       170       180       190       200       210

             270       280       290       300       310       320 
pF1KB6 IGLPILCVGSVWKSWELLKEGFLLALTQGREIQAQNFFSSFTLMKLRHSSALGGASLGAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IGLPILCVGSVWKSWELLKEGFLLALTQGREIQAQNFFSSFTLMKLRHSSALGGASLGAR
              220       230       240       250       260       270

             330       340    
pF1KB6 HIGHLLPMDYSANAIAFYSYTFS
       :::::::::::::::::::::::
XP_005 HIGHLLPMDYSANAIAFYSYTFS
              280       290   

>>XP_011531259 (OMIM: 606828) PREDICTED: N-acetyl-D-gluc  (293 aa)
 initn: 1979 init1: 1979 opt: 1979  Z-score: 2445.2  bits: 460.6 E(85289): 1.9e-129
Smith-Waterman score: 1979; 100.0% identity (100.0% similar) in 293 aa overlap (52-344:1-293)

              30        40        50        60        70        80 
pF1KB6 EDGKILAEADGLSTNHWLIGTDKCVERINEMVNRAKRKAGVDPLVPLRSLGLSLSGGDQE
                                     ::::::::::::::::::::::::::::::
XP_011                               MVNRAKRKAGVDPLVPLRSLGLSLSGGDQE
                                             10        20        30

              90       100       110       120       130       140 
pF1KB6 DAGRILIEELRDRFPYLSESYLITTDAAGSIATATPDGGVVLISGTGSNCRLINPDGSES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DAGRILIEELRDRFPYLSESYLITTDAAGSIATATPDGGVVLISGTGSNCRLINPDGSES
               40        50        60        70        80        90

             150       160       170       180       190       200 
pF1KB6 GCGGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGYVKQAMFHYFQVPDRLGIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GCGGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGYVKQAMFHYFQVPDRLGIL
              100       110       120       130       140       150

             210       220       230       240       250       260 
pF1KB6 THLYRDFDKCRFAGFCRKIAEGAQQGDPLSRYIFRKAGEMLGRHIVAVLPEIDPVLFQGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 THLYRDFDKCRFAGFCRKIAEGAQQGDPLSRYIFRKAGEMLGRHIVAVLPEIDPVLFQGK
              160       170       180       190       200       210

             270       280       290       300       310       320 
pF1KB6 IGLPILCVGSVWKSWELLKEGFLLALTQGREIQAQNFFSSFTLMKLRHSSALGGASLGAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IGLPILCVGSVWKSWELLKEGFLLALTQGREIQAQNFFSSFTLMKLRHSSALGGASLGAR
              220       230       240       250       260       270

             330       340    
pF1KB6 HIGHLLPMDYSANAIAFYSYTFS
       :::::::::::::::::::::::
XP_011 HIGHLLPMDYSANAIAFYSYTFS
              280       290   

>>NP_001317354 (OMIM: 606828) N-acetyl-D-glucosamine kin  (293 aa)
 initn: 1979 init1: 1979 opt: 1979  Z-score: 2445.2  bits: 460.6 E(85289): 1.9e-129
Smith-Waterman score: 1979; 100.0% identity (100.0% similar) in 293 aa overlap (52-344:1-293)

              30        40        50        60        70        80 
pF1KB6 EDGKILAEADGLSTNHWLIGTDKCVERINEMVNRAKRKAGVDPLVPLRSLGLSLSGGDQE
                                     ::::::::::::::::::::::::::::::
NP_001                               MVNRAKRKAGVDPLVPLRSLGLSLSGGDQE
                                             10        20        30

              90       100       110       120       130       140 
pF1KB6 DAGRILIEELRDRFPYLSESYLITTDAAGSIATATPDGGVVLISGTGSNCRLINPDGSES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DAGRILIEELRDRFPYLSESYLITTDAAGSIATATPDGGVVLISGTGSNCRLINPDGSES
               40        50        60        70        80        90

             150       160       170       180       190       200 
pF1KB6 GCGGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGYVKQAMFHYFQVPDRLGIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GCGGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGYVKQAMFHYFQVPDRLGIL
              100       110       120       130       140       150

             210       220       230       240       250       260 
pF1KB6 THLYRDFDKCRFAGFCRKIAEGAQQGDPLSRYIFRKAGEMLGRHIVAVLPEIDPVLFQGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 THLYRDFDKCRFAGFCRKIAEGAQQGDPLSRYIFRKAGEMLGRHIVAVLPEIDPVLFQGK
              160       170       180       190       200       210

             270       280       290       300       310       320 
pF1KB6 IGLPILCVGSVWKSWELLKEGFLLALTQGREIQAQNFFSSFTLMKLRHSSALGGASLGAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IGLPILCVGSVWKSWELLKEGFLLALTQGREIQAQNFFSSFTLMKLRHSSALGGASLGAR
              220       230       240       250       260       270

             330       340    
pF1KB6 HIGHLLPMDYSANAIAFYSYTFS
       :::::::::::::::::::::::
NP_001 HIGHLLPMDYSANAIAFYSYTFS
              280       290   

>>XP_005264470 (OMIM: 606828) PREDICTED: N-acetyl-D-gluc  (293 aa)
 initn: 1979 init1: 1979 opt: 1979  Z-score: 2445.2  bits: 460.6 E(85289): 1.9e-129
Smith-Waterman score: 1979; 100.0% identity (100.0% similar) in 293 aa overlap (52-344:1-293)

              30        40        50        60        70        80 
pF1KB6 EDGKILAEADGLSTNHWLIGTDKCVERINEMVNRAKRKAGVDPLVPLRSLGLSLSGGDQE
                                     ::::::::::::::::::::::::::::::
XP_005                               MVNRAKRKAGVDPLVPLRSLGLSLSGGDQE
                                             10        20        30

              90       100       110       120       130       140 
pF1KB6 DAGRILIEELRDRFPYLSESYLITTDAAGSIATATPDGGVVLISGTGSNCRLINPDGSES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DAGRILIEELRDRFPYLSESYLITTDAAGSIATATPDGGVVLISGTGSNCRLINPDGSES
               40        50        60        70        80        90

             150       160       170       180       190       200 
pF1KB6 GCGGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGYVKQAMFHYFQVPDRLGIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GCGGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGYVKQAMFHYFQVPDRLGIL
              100       110       120       130       140       150

             210       220       230       240       250       260 
pF1KB6 THLYRDFDKCRFAGFCRKIAEGAQQGDPLSRYIFRKAGEMLGRHIVAVLPEIDPVLFQGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 THLYRDFDKCRFAGFCRKIAEGAQQGDPLSRYIFRKAGEMLGRHIVAVLPEIDPVLFQGK
              160       170       180       190       200       210

             270       280       290       300       310       320 
pF1KB6 IGLPILCVGSVWKSWELLKEGFLLALTQGREIQAQNFFSSFTLMKLRHSSALGGASLGAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IGLPILCVGSVWKSWELLKEGFLLALTQGREIQAQNFFSSFTLMKLRHSSALGGASLGAR
              220       230       240       250       260       270

             330       340    
pF1KB6 HIGHLLPMDYSANAIAFYSYTFS
       :::::::::::::::::::::::
XP_005 HIGHLLPMDYSANAIAFYSYTFS
              280       290   

>>XP_016859929 (OMIM: 606828) PREDICTED: N-acetyl-D-gluc  (263 aa)
 initn: 1319 init1: 1299 opt: 1299  Z-score: 1607.0  bits: 305.4 E(85289): 9e-83
Smith-Waterman score: 1299; 99.0% identity (99.5% similar) in 197 aa overlap (1-197:47-243)

                                             10        20        30
pF1KB6                               MAAIYGGVEGGGTRSEVLLVSEDGKILAEA
                                     ::::::::::::::::::::::::::::::
XP_016 SGAVPRQLEGRRCQAGRDANGGTSSDGSSSMAAIYGGVEGGGTRSEVLLVSEDGKILAEA
         20        30        40        50        60        70      

               40        50        60        70        80        90
pF1KB6 DGLSTNHWLIGTDKCVERINEMVNRAKRKAGVDPLVPLRSLGLSLSGGDQEDAGRILIEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DGLSTNHWLIGTDKCVERINEMVNRAKRKAGVDPLVPLRSLGLSLSGGDQEDAGRILIEE
         80        90       100       110       120       130      

              100       110       120       130       140       150
pF1KB6 LRDRFPYLSESYLITTDAAGSIATATPDGGVVLISGTGSNCRLINPDGSESGCGGWGHMM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LRDRFPYLSESYLITTDAAGSIATATPDGGVVLISGTGSNCRLINPDGSESGCGGWGHMM
        140       150       160       170       180       190      

              160       170       180       190       200       210
pF1KB6 GDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGYVKQAMFHYFQVPDRLGILTHLYRDFDK
       :::::::::::::::::::::::::::::::::::::::::::: .:             
XP_016 GDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGYVKQAMFHYFQVLSRETPFPAISSGRLG
        200       210       220       230       240       250      

              220       230       240       250       260       270
pF1KB6 CRFAGFCRKIAEGAQQGDPLSRYIFRKAGEMLGRHIVAVLPEIDPVLFQGKIGLPILCVG
                                                                   
XP_016 RCWADTS                                                     
        260                                                        




344 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 22:58:52 2016 done: Fri Nov  4 22:58:53 2016
 Total Scan time:  7.990 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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