Result of FASTA (ccds) for pF1KB6417
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6417, 309 aa
  1>>>pF1KB6417 309 - 309 aa - 309 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0155+/-0.000654; mu= 13.9312+/- 0.040
 mean_var=92.7475+/-18.449, 0's: 0 Z-trim(113.0): 26  B-trim: 6 in 1/50
 Lambda= 0.133175
 statistics sampled from 13626 (13648) to 13626 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.765), E-opt: 0.2 (0.419), width:  16
 Scan time:  2.920

The best scores are:                                      opt bits E(32554)
CCDS2674.2 MYD88 gene_id:4615|Hs108|chr3           ( 309) 2073 407.6 6.1e-114
CCDS54565.1 MYD88 gene_id:4615|Hs108|chr3          ( 317) 2047 402.6  2e-112
CCDS54566.1 MYD88 gene_id:4615|Hs108|chr3          ( 204) 1091 218.8 2.8e-57
CCDS54567.1 MYD88 gene_id:4615|Hs108|chr3          ( 264)  995 200.5 1.2e-51
CCDS54568.1 MYD88 gene_id:4615|Hs108|chr3          ( 159)  796 162.1 2.6e-40


>>CCDS2674.2 MYD88 gene_id:4615|Hs108|chr3                (309 aa)
 initn: 2073 init1: 2073 opt: 2073  Z-score: 2159.0  bits: 407.6 E(32554): 6.1e-114
Smith-Waterman score: 2073; 100.0% identity (100.0% similar) in 309 aa overlap (1-309:1-309)

               10        20        30        40        50        60
pF1KB6 MRPDRAEAPGPPAMAAGGPGAGSAAPVSSTSSLPLAALNMRVRRRLSLFLNVRTQVAADW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 MRPDRAEAPGPPAMAAGGPGAGSAAPVSSTSSLPLAALNMRVRRRLSLFLNVRTQVAADW
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 TALAEEMDFEYLEIRQLETQADPTGRLLDAWQGRPGASVGRLLELLTKLGRDDVLLELGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 TALAEEMDFEYLEIRQLETQADPTGRLLDAWQGRPGASVGRLLELLTKLGRDDVLLELGP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 SIEEDCQKYILKQQQEEAEKPLQVAAVDSSVPRTAELAGITTLDDPLGHMPERFDAFICY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 SIEEDCQKYILKQQQEEAEKPLQVAAVDSSVPRTAELAGITTLDDPLGHMPERFDAFICY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 CPSDIQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 CPSDIQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDY
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 LQSKECDFQTKFALSLSPGAHQKRLIPIKYKAMKKEFPSILRFITVCDYTNPCTKSWFWT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 LQSKECDFQTKFALSLSPGAHQKRLIPIKYKAMKKEFPSILRFITVCDYTNPCTKSWFWT
              250       260       270       280       290       300

                
pF1KB6 RLAKALSLP
       :::::::::
CCDS26 RLAKALSLP
                

>>CCDS54565.1 MYD88 gene_id:4615|Hs108|chr3               (317 aa)
 initn: 2062 init1: 1517 opt: 2047  Z-score: 2131.9  bits: 402.6 E(32554): 2e-112
Smith-Waterman score: 2047; 97.5% identity (97.5% similar) in 317 aa overlap (1-309:1-317)

               10        20        30        40        50        60
pF1KB6 MRPDRAEAPGPPAMAAGGPGAGSAAPVSSTSSLPLAALNMRVRRRLSLFLNVRTQVAADW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MRPDRAEAPGPPAMAAGGPGAGSAAPVSSTSSLPLAALNMRVRRRLSLFLNVRTQVAADW
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 TALAEEMDFEYLEIRQLETQADPTGRLLDAWQGRPGASVGRLLELLTKLGRDDVLLELGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 TALAEEMDFEYLEIRQLETQADPTGRLLDAWQGRPGASVGRLLELLTKLGRDDVLLELGP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 SIEEDCQKYILKQQQEEAEKPLQVAAVDSSVPRTAELAGITTLDDPLGHMPERFDAFICY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 SIEEDCQKYILKQQQEEAEKPLQVAAVDSSVPRTAELAGITTLDDPLGHMPERFDAFICY
              130       140       150       160       170       180

              190       200       210       220               230  
pF1KB6 CPSDIQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKR--------CRRM
       ::::::::::::::::::::::::::::::::::::::::::::::::        ::::
CCDS54 CPSDIQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRLARRPRGGCRRM
              190       200       210       220       230       240

            240       250       260       270       280       290  
pF1KB6 VVVVSDDYLQSKECDFQTKFALSLSPGAHQKRLIPIKYKAMKKEFPSILRFITVCDYTNP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 VVVVSDDYLQSKECDFQTKFALSLSPGAHQKRLIPIKYKAMKKEFPSILRFITVCDYTNP
              250       260       270       280       290       300

            300         
pF1KB6 CTKSWFWTRLAKALSLP
       :::::::::::::::::
CCDS54 CTKSWFWTRLAKALSLP
              310       

>>CCDS54566.1 MYD88 gene_id:4615|Hs108|chr3               (204 aa)
 initn: 1091 init1: 1091 opt: 1091  Z-score: 1141.9  bits: 218.8 E(32554): 2.8e-57
Smith-Waterman score: 1091; 100.0% identity (100.0% similar) in 168 aa overlap (1-168:1-168)

               10        20        30        40        50        60
pF1KB6 MRPDRAEAPGPPAMAAGGPGAGSAAPVSSTSSLPLAALNMRVRRRLSLFLNVRTQVAADW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MRPDRAEAPGPPAMAAGGPGAGSAAPVSSTSSLPLAALNMRVRRRLSLFLNVRTQVAADW
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 TALAEEMDFEYLEIRQLETQADPTGRLLDAWQGRPGASVGRLLELLTKLGRDDVLLELGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 TALAEEMDFEYLEIRQLETQADPTGRLLDAWQGRPGASVGRLLELLTKLGRDDVLLELGP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 SIEEDCQKYILKQQQEEAEKPLQVAAVDSSVPRTAELAGITTLDDPLGHMPERFDAFICY
       ::::::::::::::::::::::::::::::::::::::::::::::::            
CCDS54 SIEEDCQKYILKQQQEEAEKPLQVAAVDSSVPRTAELAGITTLDDPLGAAGWWWLSLMIT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 CPSDIQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDY
                                                                   
CCDS54 CRARNVTSRPNLHSASLQVPIRSD                                    
              190       200                                        

>>CCDS54567.1 MYD88 gene_id:4615|Hs108|chr3               (264 aa)
 initn: 994 init1: 994 opt: 995  Z-score: 1040.7  bits: 200.5 E(32554): 1.2e-51
Smith-Waterman score: 1686; 85.4% identity (85.4% similar) in 309 aa overlap (1-309:1-264)

               10        20        30        40        50        60
pF1KB6 MRPDRAEAPGPPAMAAGGPGAGSAAPVSSTSSLPLAALNMRVRRRLSLFLNVRTQVAADW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MRPDRAEAPGPPAMAAGGPGAGSAAPVSSTSSLPLAALNMRVRRRLSLFLNVRTQVAADW
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 TALAEEMDFEYLEIRQLETQADPTGRLLDAWQGRPGASVGRLLELLTKLGRDDVLLELGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 TALAEEMDFEYLEIRQLETQADPTGRLLDAWQGRPGASVGRLLELLTKLGRDDVLLELGP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 SIEEDCQKYILKQQQEEAEKPLQVAAVDSSVPRTAELAGITTLDDPLGHMPERFDAFICY
       ::                                             :::::::::::::
CCDS54 SI---------------------------------------------GHMPERFDAFICY
                                                           130     

              190       200       210       220       230       240
pF1KB6 CPSDIQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 CPSDIQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDY
         140       150       160       170       180       190     

              250       260       270       280       290       300
pF1KB6 LQSKECDFQTKFALSLSPGAHQKRLIPIKYKAMKKEFPSILRFITVCDYTNPCTKSWFWT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LQSKECDFQTKFALSLSPGAHQKRLIPIKYKAMKKEFPSILRFITVCDYTNPCTKSWFWT
         200       210       220       230       240       250     

                
pF1KB6 RLAKALSLP
       :::::::::
CCDS54 RLAKALSLP
         260    

>>CCDS54568.1 MYD88 gene_id:4615|Hs108|chr3               (159 aa)
 initn: 796 init1: 796 opt: 796  Z-score: 837.2  bits: 162.1 E(32554): 2.6e-40
Smith-Waterman score: 796; 100.0% identity (100.0% similar) in 122 aa overlap (1-122:1-122)

               10        20        30        40        50        60
pF1KB6 MRPDRAEAPGPPAMAAGGPGAGSAAPVSSTSSLPLAALNMRVRRRLSLFLNVRTQVAADW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MRPDRAEAPGPPAMAAGGPGAGSAAPVSSTSSLPLAALNMRVRRRLSLFLNVRTQVAADW
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 TALAEEMDFEYLEIRQLETQADPTGRLLDAWQGRPGASVGRLLELLTKLGRDDVLLELGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 TALAEEMDFEYLEIRQLETQADPTGRLLDAWQGRPGASVGRLLELLTKLGRDDVLLELGP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 SIEEDCQKYILKQQQEEAEKPLQVAAVDSSVPRTAELAGITTLDDPLGHMPERFDAFICY
       ::                                                          
CCDS54 SIGAAGWWWLSLMITCRARNVTSRPNLHSASLQVPIRSD                     
              130       140       150                              




309 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 01:13:29 2016 done: Sat Nov  5 01:13:30 2016
 Total Scan time:  2.920 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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