Result of FASTA (ccds) for pF1KB7954
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7954, 395 aa
  1>>>pF1KB7954 395 - 395 aa - 395 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.5596+/-0.00121; mu= 7.6508+/- 0.073
 mean_var=188.1883+/-38.247, 0's: 0 Z-trim(106.8): 228  B-trim: 0 in 0/53
 Lambda= 0.093493
 statistics sampled from 8925 (9176) to 8925 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.631), E-opt: 0.2 (0.282), width:  16
 Scan time:  3.020

The best scores are:                                      opt bits E(32554)
CCDS32239.1 GABPB1 gene_id:2553|Hs108|chr15        ( 395) 2479 347.2 1.6e-95
CCDS45258.1 GABPB1 gene_id:2553|Hs108|chr15        ( 360) 2179 306.7 2.3e-83
CCDS983.1 GABPB2 gene_id:126626|Hs108|chr1         ( 448) 1646 234.9 1.2e-61
CCDS10135.1 GABPB1 gene_id:2553|Hs108|chr15        ( 383) 1327 191.8 9.3e-49
CCDS10136.1 GABPB1 gene_id:2553|Hs108|chr15        ( 348) 1287 186.3 3.7e-47
CCDS81373.1 GABPB2 gene_id:126626|Hs108|chr1       ( 410)  989 146.2 5.2e-35


>>CCDS32239.1 GABPB1 gene_id:2553|Hs108|chr15             (395 aa)
 initn: 2479 init1: 2479 opt: 2479  Z-score: 1828.4  bits: 347.2 E(32554): 1.6e-95
Smith-Waterman score: 2479; 100.0% identity (100.0% similar) in 395 aa overlap (1-395:1-395)

               10        20        30        40        50        60
pF1KB7 MSLVDLGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHYSTTEVLLRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MSLVDLGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHYSTTEVLLRA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 GVSRDARTKVDRTPLHMAASEGHASIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 GVSRDARTKVDRTPLHMAASEGHASIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 ELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQIAMQNQINTNPESPDTVTIHAAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 ELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQIAMQNQINTNPESPDTVTIHAAT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 PQFIIGPGGVVNLTGLVSSENSSKATDETGVSAVQFGNSSTSVLATLAALAEASAPLSNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 PQFIIGPGGVVNLTGLVSSENSSKATDETGVSAVQFGNSSTSVLATLAALAEASAPLSNS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 SETPVVATEEVVTAESVDGAIQQVVSSGGQQVITIVTDGIQLGNLHSIPTSGIGQPIIVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SETPVVATEEVVTAESVDGAIQQVVSSGGQQVITIVTDGIQLGNLHSIPTSGIGQPIIVT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 MPDGQQVLTVPATDIAEETVISEEPPAKRQCIEIIENRVESAEIEEREALQKQLDEANRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MPDGQQVLTVPATDIAEETVISEEPPAKRQCIEIIENRVESAEIEEREALQKQLDEANRE
              310       320       330       340       350       360

              370       380       390     
pF1KB7 AQKYRQQLLKKEQEAEAYRQKLEAMTRLQTNKEAV
       :::::::::::::::::::::::::::::::::::
CCDS32 AQKYRQQLLKKEQEAEAYRQKLEAMTRLQTNKEAV
              370       380       390     

>>CCDS45258.1 GABPB1 gene_id:2553|Hs108|chr15             (360 aa)
 initn: 2397 init1: 2179 opt: 2179  Z-score: 1610.3  bits: 306.7 E(32554): 2.3e-83
Smith-Waterman score: 2179; 99.1% identity (99.1% similar) in 350 aa overlap (1-350:1-350)

               10        20        30        40        50        60
pF1KB7 MSLVDLGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHYSTTEVLLRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MSLVDLGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHYSTTEVLLRA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 GVSRDARTKVDRTPLHMAASEGHASIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 GVSRDARTKVDRTPLHMAASEGHASIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 ELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQIAMQNQINTNPESPDTVTIHAAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 ELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQIAMQNQINTNPESPDTVTIHAAT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 PQFIIGPGGVVNLTGLVSSENSSKATDETGVSAVQFGNSSTSVLATLAALAEASAPLSNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 PQFIIGPGGVVNLTGLVSSENSSKATDETGVSAVQFGNSSTSVLATLAALAEASAPLSNS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 SETPVVATEEVVTAESVDGAIQQVVSSGGQQVITIVTDGIQLGNLHSIPTSGIGQPIIVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 SETPVVATEEVVTAESVDGAIQQVVSSGGQQVITIVTDGIQLGNLHSIPTSGIGQPIIVT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 MPDGQQVLTVPATDIAEETVISEEPPAKRQCIEIIENRVESAEIEEREALQKQLDEANRE
       ::::::::::::::::::::::::::::::::::::::::::::: :  :          
CCDS45 MPDGQQVLTVPATDIAEETVISEEPPAKRQCIEIIENRVESAEIEVRSLLPGVLCRSHPK
              310       320       330       340       350       360

              370       380       390     
pF1KB7 AQKYRQQLLKKEQEAEAYRQKLEAMTRLQTNKEAV

>>CCDS983.1 GABPB2 gene_id:126626|Hs108|chr1              (448 aa)
 initn: 1501 init1: 1072 opt: 1646  Z-score: 1220.5  bits: 234.9 E(32554): 1.2e-61
Smith-Waterman score: 1646; 68.5% identity (86.2% similar) in 400 aa overlap (1-391:1-398)

               10        20        30        40        50        60
pF1KB7 MSLVDLGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHYSTTEVLLRA
       ::::::::.:::::: ::::::: :::::::::::::::::::::::::::::.::::::
CCDS98 MSLVDLGKRLLEAARKGQDDEVRTLMANGAPFTTDWLGTSPLHLAAQYGHYSTAEVLLRA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 GVSRDARTKVDRTPLHMAASEGHASIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVV
       :::::::::::::::::::..::: :::.:...::::::::::::::::::::..:..::
CCDS98 GVSRDARTKVDRTPLHMAAADGHAHIVELLVRNGADVNAKDMLKMTALHWATERHHRDVV
               70        80        90       100       110       120

              130       140       150       160       170          
pF1KB7 ELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQIAMQNQINTNPESPDTVT--IHA
       :::::::::::. ::: :.::::.....: ..  ::: :::::.:.:::  . ::  .  
CCDS98 ELLIKYGADVHAFSKFDKSAFDIALEKNNAEILVILQEAMQNQVNVNPERANPVTDPVSM
              130       140       150       160       170       180

      180       190       200       210       220       230        
pF1KB7 ATPQFIIGPGGVVNLTGLVSSENSSKATDETGVSAVQFGNSSTSVLATLAALAEASAPLS
       :.: ::.  : ::::..:.:: :.. .. .  .:.:::.::.::::::::::::::.:::
CCDS98 AAP-FIFTSGEVVNLASLISSTNTKTTSGDPHASTVQFSNSTTSVLATLAALAEASVPLS
               190       200       210       220       230         

      240       250       260       270       280        290       
pF1KB7 NSSETPVVATEEVVTAESVDGAIQQVVSSGGQQVITIVTDGIQLGNLH-SIPTSGIGQPI
       :: .. .. :::.. ..:::..::::..::::.::::::::. :::.. ::::.:::::.
CCDS98 NSHRA-TANTEEIIEGNSVDSSIQQVMGSGGQRVITIVTDGVPLGNIQTSIPTGGIGQPF
     240        250       260       270       280       290        

       300       310       320            330       340        350 
pF1KB7 IVTMPDGQQVLTVPATDIAEETVISEE-----PPAKRQCIEIIENRVE-SAEIEEREALQ
       :::. ::::::::::  .::::::.::     : .:.  :    : :: : : .::: ::
CCDS98 IVTVQDGQQVLTVPAGKVAEETVIKEEEEEKLPLTKKPRIGEKTNSVEESKEGNERELLQ
      300       310       320       330       340       350        

             360       370       380       390                     
pF1KB7 KQLDEANREAQKYRQQLLKKEQEAEAYRQKLEAMTRLQTNKEAV                
       .::.::::.::.::.:::::::::: :: ::::..: : :                    
CCDS98 QQLQEANRRAQEYRHQLLKKEQEAEQYRLKLEAIARQQPNGVDFTMVEEVAEVDAVVVTE
      360       370       380       390       400       410        

CCDS98 GELEERETKVTGSAGTTEPHTRVSMATVSS
      420       430       440        

>>CCDS10135.1 GABPB1 gene_id:2553|Hs108|chr15             (383 aa)
 initn: 1325 init1: 1260 opt: 1327  Z-score: 988.8  bits: 191.8 E(32554): 9.3e-49
Smith-Waterman score: 2378; 97.0% identity (97.0% similar) in 395 aa overlap (1-395:1-383)

               10        20        30        40        50        60
pF1KB7 MSLVDLGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHYSTTEVLLRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MSLVDLGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHYSTTEVLLRA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 GVSRDARTKVDRTPLHMAASEGHASIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GVSRDARTKVDRTPLHMAASEGHASIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 ELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQIAMQNQINTNPESPDTVTIHAAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQIAMQNQINTNPESPDTVTIHAAT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 PQFIIGPGGVVNLTGLVSSENSSKATDETGVSAVQFGNSSTSVLATLAALAEASAPLSNS
       ::::::::::::::            ::::::::::::::::::::::::::::::::::
CCDS10 PQFIIGPGGVVNLT------------DETGVSAVQFGNSSTSVLATLAALAEASAPLSNS
              190                   200       210       220        

              250       260       270       280       290       300
pF1KB7 SETPVVATEEVVTAESVDGAIQQVVSSGGQQVITIVTDGIQLGNLHSIPTSGIGQPIIVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SETPVVATEEVVTAESVDGAIQQVVSSGGQQVITIVTDGIQLGNLHSIPTSGIGQPIIVT
      230       240       250       260       270       280        

              310       320       330       340       350       360
pF1KB7 MPDGQQVLTVPATDIAEETVISEEPPAKRQCIEIIENRVESAEIEEREALQKQLDEANRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MPDGQQVLTVPATDIAEETVISEEPPAKRQCIEIIENRVESAEIEEREALQKQLDEANRE
      290       300       310       320       330       340        

              370       380       390     
pF1KB7 AQKYRQQLLKKEQEAEAYRQKLEAMTRLQTNKEAV
       :::::::::::::::::::::::::::::::::::
CCDS10 AQKYRQQLLKKEQEAEAYRQKLEAMTRLQTNKEAV
      350       360       370       380   

>>CCDS10136.1 GABPB1 gene_id:2553|Hs108|chr15             (348 aa)
 initn: 2132 init1: 1260 opt: 1287  Z-score: 960.2  bits: 186.3 E(32554): 3.7e-47
Smith-Waterman score: 2078; 95.7% identity (95.7% similar) in 350 aa overlap (1-350:1-338)

               10        20        30        40        50        60
pF1KB7 MSLVDLGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHYSTTEVLLRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MSLVDLGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHYSTTEVLLRA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 GVSRDARTKVDRTPLHMAASEGHASIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GVSRDARTKVDRTPLHMAASEGHASIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 ELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQIAMQNQINTNPESPDTVTIHAAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQIAMQNQINTNPESPDTVTIHAAT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 PQFIIGPGGVVNLTGLVSSENSSKATDETGVSAVQFGNSSTSVLATLAALAEASAPLSNS
       ::::::::::::::            ::::::::::::::::::::::::::::::::::
CCDS10 PQFIIGPGGVVNLT------------DETGVSAVQFGNSSTSVLATLAALAEASAPLSNS
              190                   200       210       220        

              250       260       270       280       290       300
pF1KB7 SETPVVATEEVVTAESVDGAIQQVVSSGGQQVITIVTDGIQLGNLHSIPTSGIGQPIIVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SETPVVATEEVVTAESVDGAIQQVVSSGGQQVITIVTDGIQLGNLHSIPTSGIGQPIIVT
      230       240       250       260       270       280        

              310       320       330       340       350       360
pF1KB7 MPDGQQVLTVPATDIAEETVISEEPPAKRQCIEIIENRVESAEIEEREALQKQLDEANRE
       ::::::::::::::::::::::::::::::::::::::::::::: :  :          
CCDS10 MPDGQQVLTVPATDIAEETVISEEPPAKRQCIEIIENRVESAEIEVRSLLPGVLCRSHPK
      290       300       310       320       330       340        

              370       380       390     
pF1KB7 AQKYRQQLLKKEQEAEAYRQKLEAMTRLQTNKEAV

>>CCDS81373.1 GABPB2 gene_id:126626|Hs108|chr1            (410 aa)
 initn: 1555 init1: 914 opt: 989  Z-score: 742.1  bits: 146.2 E(32554): 5.2e-35
Smith-Waterman score: 1433; 62.5% identity (77.5% similar) in 400 aa overlap (1-391:1-360)

               10        20        30        40        50        60
pF1KB7 MSLVDLGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHYSTTEVLLRA
       ::::::::.:::::: ::::::: :::::::::::::::::::::::::::::.::::::
CCDS81 MSLVDLGKRLLEAARKGQDDEVRTLMANGAPFTTDWLGTSPLHLAAQYGHYSTAEVLLRA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 GVSRDARTKVDRTPLHMAASEGHASIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVV
       :::::::::::::::::::..::: :::.:...::::::::::::::::::::..:..::
CCDS81 GVSRDARTKVDRTPLHMAAADGHAHIVELLVRNGADVNAKDMLKMTALHWATERHHRDVV
               70        80        90       100       110       120

              130       140       150       160       170          
pF1KB7 ELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQIAMQNQINTNPESPDTVT--IHA
       :::::::::::. ::: :.::::.....: ..  ::: :::::.:.:::  . ::  .  
CCDS81 ELLIKYGADVHAFSKFDKSAFDIALEKNNAEILVILQEAMQNQVNVNPERANPVTDPVSM
              130       140       150       160       170       180

      180       190       200       210       220       230        
pF1KB7 ATPQFIIGPGGVVNLTGLVSSENSSKATDETGVSAVQFGNSSTSVLATLAALAEASAPLS
       :.: ::.  : ::::..:.:: :.                                    
CCDS81 AAP-FIFTSGEVVNLASLISSTNT------------------------------------
               190       200                                       

      240       250       260       270       280        290       
pF1KB7 NSSETPVVATEEVVTAESVDGAIQQVVSSGGQQVITIVTDGIQLGNLH-SIPTSGIGQPI
          .:  . :::.. ..:::..::::..::::.::::::::. :::.. ::::.:::::.
CCDS81 ---KTTSANTEEIIEGNSVDSSIQQVMGSGGQRVITIVTDGVPLGNIQTSIPTGGIGQPF
              210       220       230       240       250       260

       300       310       320            330       340        350 
pF1KB7 IVTMPDGQQVLTVPATDIAEETVISEE-----PPAKRQCIEIIENRVE-SAEIEEREALQ
       :::. ::::::::::  .::::::.::     : .:.  :    : :: : : .::: ::
CCDS81 IVTVQDGQQVLTVPAGKVAEETVIKEEEEEKLPLTKKPRIGEKTNSVEESKEGNERELLQ
              270       280       290       300       310       320

             360       370       380       390                     
pF1KB7 KQLDEANREAQKYRQQLLKKEQEAEAYRQKLEAMTRLQTNKEAV                
       .::.::::.::.::.:::::::::: :: ::::..: : :                    
CCDS81 QQLQEANRRAQEYRHQLLKKEQEAEQYRLKLEAIARQQPNGVDFTMVEEVAEVDAVVVTE
              330       340       350       360       370       380

CCDS81 GELEERETKVTGSAGTTEPHTRVSMATVSS
              390       400       410




395 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 19:50:43 2016 done: Sat Nov  5 19:50:43 2016
 Total Scan time:  3.020 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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