FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB8234, 258 aa 1>>>pF1KB8234 258 - 258 aa - 258 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.8758+/-0.000265; mu= 9.3591+/- 0.017 mean_var=118.8193+/-24.462, 0's: 0 Z-trim(123.1): 5 B-trim: 0 in 0/58 Lambda= 0.117660 statistics sampled from 42245 (42251) to 42245 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.811), E-opt: 0.2 (0.495), width: 16 Scan time: 7.160 The best scores are: opt bits E(85289) NP_054765 (OMIM: 611982) 28S ribosomal protein S18 ( 258) 1820 318.7 6.4e-87 >>NP_054765 (OMIM: 611982) 28S ribosomal protein S18b, m (258 aa) initn: 1820 init1: 1820 opt: 1820 Z-score: 1681.5 bits: 318.7 E(85289): 6.4e-87 Smith-Waterman score: 1820; 100.0% identity (100.0% similar) in 258 aa overlap (1-258:1-258) 10 20 30 40 50 60 pF1KB8 MAASVLNTVLRRLPMLSLFRGSHRVQVPLQTLCTKAPSEEDSLSSVPISPYKDEPWKYLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_054 MAASVLNTVLRRLPMLSLFRGSHRVQVPLQTLCTKAPSEEDSLSSVPISPYKDEPWKYLE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 SEEYQERYGSRPVWADYRRNHKGGVPPQRTRKTCIRRNKVVGNPCPICRDHKLHVDFRNV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_054 SEEYQERYGSRPVWADYRRNHKGGVPPQRTRKTCIRRNKVVGNPCPICRDHKLHVDFRNV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 KLLEQFVCAHTGIIFYAPYTGVCVKQHKRLTQAIQKARDHGLLIYHIPQVEPRDLDFSTS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_054 KLLEQFVCAHTGIIFYAPYTGVCVKQHKRLTQAIQKARDHGLLIYHIPQVEPRDLDFSTS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB8 HGAVSATPPAPTLVSGDPWYPWYNWKQPPERELSRLRRLYQGHLQEESGPPPESMPKMPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_054 HGAVSATPPAPTLVSGDPWYPWYNWKQPPERELSRLRRLYQGHLQEESGPPPESMPKMPP 190 200 210 220 230 240 250 pF1KB8 RTPAEASSTGQTGPQSAL :::::::::::::::::: NP_054 RTPAEASSTGQTGPQSAL 250 258 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Fri Nov 4 22:01:06 2016 done: Fri Nov 4 22:01:07 2016 Total Scan time: 7.160 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]