FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB8234, 258 aa 1>>>pF1KB8234 258 - 258 aa - 258 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.4007+/-0.000638; mu= 12.2359+/- 0.039 mean_var=115.1308+/-23.115, 0's: 0 Z-trim(115.4): 5 B-trim: 0 in 0/53 Lambda= 0.119530 statistics sampled from 16004 (16009) to 16004 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.81), E-opt: 0.2 (0.492), width: 16 Scan time: 2.670 The best scores are: opt bits E(32554) CCDS4682.1 MRPS18B gene_id:28973|Hs108|chr6 ( 258) 1820 323.5 9e-89 >>CCDS4682.1 MRPS18B gene_id:28973|Hs108|chr6 (258 aa) initn: 1820 init1: 1820 opt: 1820 Z-score: 1707.2 bits: 323.5 E(32554): 9e-89 Smith-Waterman score: 1820; 100.0% identity (100.0% similar) in 258 aa overlap (1-258:1-258) 10 20 30 40 50 60 pF1KB8 MAASVLNTVLRRLPMLSLFRGSHRVQVPLQTLCTKAPSEEDSLSSVPISPYKDEPWKYLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 MAASVLNTVLRRLPMLSLFRGSHRVQVPLQTLCTKAPSEEDSLSSVPISPYKDEPWKYLE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 SEEYQERYGSRPVWADYRRNHKGGVPPQRTRKTCIRRNKVVGNPCPICRDHKLHVDFRNV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 SEEYQERYGSRPVWADYRRNHKGGVPPQRTRKTCIRRNKVVGNPCPICRDHKLHVDFRNV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 KLLEQFVCAHTGIIFYAPYTGVCVKQHKRLTQAIQKARDHGLLIYHIPQVEPRDLDFSTS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 KLLEQFVCAHTGIIFYAPYTGVCVKQHKRLTQAIQKARDHGLLIYHIPQVEPRDLDFSTS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB8 HGAVSATPPAPTLVSGDPWYPWYNWKQPPERELSRLRRLYQGHLQEESGPPPESMPKMPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 HGAVSATPPAPTLVSGDPWYPWYNWKQPPERELSRLRRLYQGHLQEESGPPPESMPKMPP 190 200 210 220 230 240 250 pF1KB8 RTPAEASSTGQTGPQSAL :::::::::::::::::: CCDS46 RTPAEASSTGQTGPQSAL 250 258 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Fri Nov 4 22:01:06 2016 done: Fri Nov 4 22:01:06 2016 Total Scan time: 2.670 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]