FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB6887, 183 aa 1>>>pF1KB6887 183 - 183 aa - 183 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.0136+/-0.000649; mu= 11.9601+/- 0.039 mean_var=115.1638+/-22.154, 0's: 0 Z-trim(115.3): 8 B-trim: 10 in 1/51 Lambda= 0.119513 statistics sampled from 15893 (15901) to 15893 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.827), E-opt: 0.2 (0.488), width: 16 Scan time: 2.210 The best scores are: opt bits E(32554) CCDS174.1 MFAP2 gene_id:4237|Hs108|chr1 ( 183) 1313 235.8 1.1e-62 CCDS44071.1 MFAP2 gene_id:4237|Hs108|chr1 ( 182) 1296 232.9 8.5e-62 >>CCDS174.1 MFAP2 gene_id:4237|Hs108|chr1 (183 aa) initn: 1313 init1: 1313 opt: 1313 Z-score: 1238.8 bits: 235.8 E(32554): 1.1e-62 Smith-Waterman score: 1313; 100.0% identity (100.0% similar) in 183 aa overlap (1-183:1-183) 10 20 30 40 50 60 pF1KB6 MRAAYLFLLFLPAGLLAQGQYDLDPLPPFPDHVQYTHYSDQIDNPDYYDYQEVTPRPSEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS17 MRAAYLFLLFLPAGLLAQGQYDLDPLPPFPDHVQYTHYSDQIDNPDYYDYQEVTPRPSEE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB6 QFQFQSQQQVQQEVIPAPTPEPGNAELEPTEPGPLDCREEQYPCTRLYSIHRPCKQCLNE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS17 QFQFQSQQQVQQEVIPAPTPEPGNAELEPTEPGPLDCREEQYPCTRLYSIHRPCKQCLNE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB6 VCFYSLRRVYVINKEICVRTVCAHEELLRADLCRDKFSKCGVMASSGLCQSVAASCARSC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS17 VCFYSLRRVYVINKEICVRTVCAHEELLRADLCRDKFSKCGVMASSGLCQSVAASCARSC 130 140 150 160 170 180 pF1KB6 GSC ::: CCDS17 GSC >>CCDS44071.1 MFAP2 gene_id:4237|Hs108|chr1 (182 aa) initn: 1230 init1: 1230 opt: 1296 Z-score: 1222.9 bits: 232.9 E(32554): 8.5e-62 Smith-Waterman score: 1296; 99.5% identity (99.5% similar) in 183 aa overlap (1-183:1-182) 10 20 30 40 50 60 pF1KB6 MRAAYLFLLFLPAGLLAQGQYDLDPLPPFPDHVQYTHYSDQIDNPDYYDYQEVTPRPSEE :::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 MRAAYLFLLFLP-GLLAQGQYDLDPLPPFPDHVQYTHYSDQIDNPDYYDYQEVTPRPSEE 10 20 30 40 50 70 80 90 100 110 120 pF1KB6 QFQFQSQQQVQQEVIPAPTPEPGNAELEPTEPGPLDCREEQYPCTRLYSIHRPCKQCLNE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 QFQFQSQQQVQQEVIPAPTPEPGNAELEPTEPGPLDCREEQYPCTRLYSIHRPCKQCLNE 60 70 80 90 100 110 130 140 150 160 170 180 pF1KB6 VCFYSLRRVYVINKEICVRTVCAHEELLRADLCRDKFSKCGVMASSGLCQSVAASCARSC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 VCFYSLRRVYVINKEICVRTVCAHEELLRADLCRDKFSKCGVMASSGLCQSVAASCARSC 120 130 140 150 160 170 pF1KB6 GSC ::: CCDS44 GSC 180 183 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sat Nov 5 00:12:21 2016 done: Sat Nov 5 00:12:22 2016 Total Scan time: 2.210 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]