FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB7822, 600 aa 1>>>pF1KB7822 600 - 600 aa - 600 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 10.4488+/-0.000951; mu= -1.6888+/- 0.057 mean_var=349.8815+/-71.781, 0's: 0 Z-trim(115.6): 11 B-trim: 156 in 1/54 Lambda= 0.068567 statistics sampled from 16148 (16156) to 16148 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.793), E-opt: 0.2 (0.496), width: 16 Scan time: 4.110 The best scores are: opt bits E(32554) CCDS12347.1 MED26 gene_id:9441|Hs108|chr19 ( 600) 4105 419.9 4.6e-117 >>CCDS12347.1 MED26 gene_id:9441|Hs108|chr19 (600 aa) initn: 4105 init1: 4105 opt: 4105 Z-score: 2215.2 bits: 419.9 E(32554): 4.6e-117 Smith-Waterman score: 4105; 100.0% identity (100.0% similar) in 600 aa overlap (1-600:1-600) 10 20 30 40 50 60 pF1KB7 MTAAPASPQQIRDRLLQAIDPQSNIRNMVAVLEVISSLEKYPITKEALEETRLGKLINDV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 MTAAPASPQQIRDRLLQAIDPQSNIRNMVAVLEVISSLEKYPITKEALEETRLGKLINDV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB7 RKKTKNEELAKRAKKLLRSWQKLIEPAHQHEAALRGLAGATGSANGGAHNCRPEVGAAGP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 RKKTKNEELAKRAKKLLRSWQKLIEPAHQHEAALRGLAGATGSANGGAHNCRPEVGAAGP 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB7 PRSIHDLKSRNDLQRLPGQRLDRLGSRKRRGDQRDLGHPGPPPKVSKASHDPLVPNSSPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 PRSIHDLKSRNDLQRLPGQRLDRLGSRKRRGDQRDLGHPGPPPKVSKASHDPLVPNSSPL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB7 PTNGISGSPESFASSLDGSGHAGPEGSRLERDENDKHSGKIPVNAVRPHTSSPGLGKPPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 PTNGISGSPESFASSLDGSGHAGPEGSRLERDENDKHSGKIPVNAVRPHTSSPGLGKPPG 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB7 PCLQPKASVLQQLDRVDETPGPPHPKGPPRCSFSPRNSRHEGSFARQQSLYAPKGSVPSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 PCLQPKASVLQQLDRVDETPGPPHPKGPPRCSFSPRNSRHEGSFARQQSLYAPKGSVPSP 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB7 SPRPQALDATQVPSPLPLAQPSTPPVRRLELLPSAESPVCWLEQPESHQRLAGPGCKAGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 SPRPQALDATQVPSPLPLAQPSTPPVRRLELLPSAESPVCWLEQPESHQRLAGPGCKAGL 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB7 SPAEPLLSRAGFSPDSSKADSDAASSGGSDSKKKKRYRPRDYTVNLDGQVAEAGVKPVRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 SPAEPLLSRAGFSPDSSKADSDAASSGGSDSKKKKRYRPRDYTVNLDGQVAEAGVKPVRL 370 380 390 400 410 420 430 440 450 460 470 480 pF1KB7 KERKLTFDPMTRQIKPLTQKEPVRADSPVHMEQQSRTELDKQEAKASLQSPFEQTNWKEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 KERKLTFDPMTRQIKPLTQKEPVRADSPVHMEQQSRTELDKQEAKASLQSPFEQTNWKEL 430 440 450 460 470 480 490 500 510 520 530 540 pF1KB7 SRNEIIQSYLSRQSSLLSSSGAQTPGAHHFMSEYLKQEESTRQGARQLHVLVPQSPPTDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 SRNEIIQSYLSRQSSLLSSSGAQTPGAHHFMSEYLKQEESTRQGARQLHVLVPQSPPTDL 490 500 510 520 530 540 550 560 570 580 590 600 pF1KB7 PGLTREVTQDDLDRIQASQWPGVNGCQDTQGNWYDWTQCISLDPHGDDGRLNILPYVCLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 PGLTREVTQDDLDRIQASQWPGVNGCQDTQGNWYDWTQCISLDPHGDDGRLNILPYVCLD 550 560 570 580 590 600 600 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Fri Nov 4 22:27:02 2016 done: Fri Nov 4 22:27:03 2016 Total Scan time: 4.110 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]