GENSCAN 1.0	Date run:  5-Nov-116	Time: 23:21:56

Sequence gi568815591r_77919318 : 200120 bp : 36.62% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.04 PlyA - 607847 607842    6                               1.05
 1.03 Term - 620717 620433  285  0  0   12   49   197 0.128   2.62
 1.02 Intr - 635354 635250  105  0  0   42  116    30 0.012   0.69
 1.01 Init - 654267 654103  165  1  0   37   23   182 0.068   6.30
 1.00 Prom - 660286 660247   40                              -3.95

 2.03 PlyA - 660419 660414    6                               1.05
 2.02 Term - 671198 670895  304  2  1   44   48   283 0.419  13.56
 2.01 Init - 695810 695668  143  0  2   77   74    73 0.517   4.45
 2.00 Prom - 699343 699304   40                              -2.95

 3.04 PlyA - 699431 699426    6                              -4.04
 3.03 Term - 699686 699637   50  1  2  107   38    59 0.318  -0.71
 3.02 Intr - 707922 707803  120  2  0   83  121   102 0.663  12.55
 3.01 Init - 710261 710228   34  0  1   98   61     9 0.400  -0.72
 3.00 Prom - 723484 723445   40                              -2.75

 4.00 Prom + 738589 738628   40                              -5.45
 4.01 Sngl + 749538 750410  873  0  0   30   43   506 0.976  35.99
 4.02 PlyA + 750462 750467    6                               1.05

 5.00 Prom + 750771 750810   40                             -11.34
 5.01 Sngl + 750983 751447  465  2  0   60   39   232 0.840  11.39
 5.02 PlyA + 753019 753024    6                               1.05

 6.00 Prom + 760172 760211   40                              -4.75
 6.01 Init + 766982 767030   49  2  1   65  113    21 0.313   3.46
 6.02 Intr + 774898 775007  110  0  2  108   94   -18 0.050  -0.12
 6.03 Intr + 786271 786345   75  1  0   63   23   119 0.036   1.69
 6.04 Intr + 798960 799078  119  0  2    1  105   123 0.059   3.64
 6.05 Term + 799166 799343  178  0  1   38   37   129 0.539  -1.02
 6.06 PlyA + 799400 799405    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815591r_77919318|GENSCAN_predicted_peptide_1|184_aa
MKGFKEIVLLRPIYQATRKAAIFEWGPEEEKALQQVQAAALPLGPYDPADQMVLEGGYLL
NEGPMTCFRGRLENSSWDLWPPSGEMGEKKRHLLAGGQPTQAITATHKRITLLQERRKQQ
LIPPPVTSWRTRGPESVHVKPSLSAQSAFKKTSTVNKTTKDPHSPLHSLATSARAGVGIH
GRET

>gi568815591r_77919318|GENSCAN_predicted_CDS_1|555_bp
atgaagggcttcaaagaaattgtgttactccggcccatttatcaagcgacccgaaaggct
gctatttttgaatggggcccagaggaggagaaggctctgcaacaggtccaggctgctgct
ctgccacttgggccatatgacccagcagatcaaatggtgcttgagggagggtacctcttg
aatgagggtcctatgacctgcttcaggggaaggttagaaaattcttcctgggatttatgg
ccgccttccggggagatgggcgagaagaagcgccacctcctggctggaggccaaccaact
caagccattacagcaactcataaaagaataaccctgctccaagaaaggagaaaacagcag
ctaattccaccaccagtaacatcctggcgaacccgaggccctgagtctgtccacgtgaaa
ccttcactgtcagcacaatcagcattcaagaaaaccagcacagtaaataaaacaactaag
gaccctcacagtcctcttcactcccttgctacctctgccagagcaggtgttggtatccat
ggccgagagacctga

>gi568815591r_77919318|GENSCAN_predicted_peptide_2|148_aa
METPGDRHIDSLTVKEDREKVQKVDRGMRKLSHPWSFLQWKCLSVWQSLFTASTPTLLFR
KCLKLNVKNFPNVLGSPRDKAVEFVKMTQAPGVMPVILDETGDQLQDQTVLLKPSTPEVT
RSQSPSMEKKAELAFQGTQLLSDLCLDG

>gi568815591r_77919318|GENSCAN_predicted_CDS_2|447_bp
atggagactcctggagacaggcacattgacagcctgacagtgaaggaggacagagagaaa
gtacagaaagttgacagaggaatgcgaaaattgagtcatccatggtcattcttacagtgg
aagtgcttatcagtctggcagagtttattcacagccagcacacctacattgctattccgc
aaatgcctgaagctaaatgtgaaaaattttcccaatgtcctgggatcaccaagggacaaa
gctgtggaatttgtaaagatgacccaagctcctggagttatgccagtcatccttgatgag
actggagatcagctccaggaccaaactgttcttttgaaaccctccacaccagaggtcaca
agaagccaatctcctagcatggagaagaaggcagaattagcgttccagggcactcagctc
ctcagtgacttgtgcttggatggctga

>gi568815591r_77919318|GENSCAN_predicted_peptide_3|67_aa
MGVNYEWGNHEGTTRPHKEGEVPGVDYIFITVEDFMELEKSGALLESGTYEAILEYAIHD
DYSHHAE

>gi568815591r_77919318|GENSCAN_predicted_CDS_3|204_bp
atgggggttaattatgagtggggtaatcatgaaggcaccacaaggccacataaggagggt
gaggtccctggagtggattatattttcatcactgttgaagattttatggaattggagaaa
agtggtgctctcctagaaagtgggacttatgaagcgattttggagtatgcaatccatgat
gactatagtcaccatgctgagtaa

>gi568815591r_77919318|GENSCAN_predicted_peptide_4|290_aa
MFFETNENKDTTYQNLWDAFKAVRRGKFIALNAHKRKKERSKIDTLTSQLKELEKQGQTH
SKANRRQEITKIRAELKQIETQKTFQKINESRSWFFERINKIDRPIARLIKKKRVKNQID
EIKNDKGDITTDPTEIQTTIREYYKHLYANKLENLEEMDKFLNTYTLPRLNQEEVESLNR
PITGSEIVAIINSLPAKKSPGPDGFTAKFYQRYKEELVPLLLKLFQSIEKEGILPNSFYE
ASIILIPKPGRDTTKKENFRPISLMNIDAKILNKILANRIQQHIQKAYPP

>gi568815591r_77919318|GENSCAN_predicted_CDS_4|873_bp
atgttctttgaaaccaatgagaacaaagacacaacataccagaatctctgggacgcattc
aaagcagtgcgcagagggaaatttatagcactaaatgcccacaagagaaagaaggaaaga
tccaaaattgataccctaacatcacaattaaaagaactagaaaagcaagggcaaacacat
tcaaaagctaacagaaggcaagaaataactaagatccgagcagaactgaagcaaatagag
acacaaaaaacctttcaaaaaattaatgaatccaggagctggttttttgaaaggatcaac
aaaattgatagaccgatagcaagactaataaagaagaaaagagtgaagaatcaaatagat
gaaataaaaaatgataaaggggatatcaccaccgatcccacagaaatacaaactaccatc
agagaatactacaaacacctctatgcaaataaactagaaaatctagaagaaatggataaa
ttcctcaacacatacactctcccaagactaaaccaggaagaagttgaatctctgaataga
ccaataacaggctctgaaattgtggcaataatcaatagcttaccagccaaaaagagtcca
ggaccagatggattcacagccaaattctaccagaggtacaaggaggagctggtaccatta
cttctgaaactattccaatcaatagaaaaagagggaatcctccctaactcattttatgag
gccagcatcatcctgataccaaagccgggcagagacacaacaaaaaaagagaattttaga
ccaatatccttgatgaatattgatgcaaaaatcctcaataaaatactggcaaaccgaatc
cagcagcacattcaaaaagcttatccaccatga

>gi568815591r_77919318|GENSCAN_predicted_peptide_5|154_aa
MSELPFTIASKRIKYLGIQLTRDVKDLFKENYKPLCNEIKDDTNKWKNVQCSWAGRINIM
KMAILPKVIYRFNAIPIKLPMTFFTELENITLKFIWNQKRARIAKSILSQKNKAGGITLP
DFKLNYKARVTKTAWYRYQNRDIDQWNRTEPSES

>gi568815591r_77919318|GENSCAN_predicted_CDS_5|465_bp
atgagtgaactcccattcacaattgcttcaaagagaataaaatacctaggaatccaactt
acaagggatgtgaaggacctcttcaaggagaactacaaaccactgtgcaatgaaataaaa
gacgatacaaacaaatggaagaacgttcaatgctcatgggcaggaagaatcaatatcatg
aaaatggccatactgcccaaggtaatttatagattcaatgccatccccatcaagctacca
atgactttcttcacagaattggaaaacattactttaaagttcatatggaaccaaaaaaga
gcccgcattgccaagtcaatcctaagccaaaagaacaaagccggaggcatcacgctacct
gacttcaaactcaactacaaggctagagtaaccaaaacagcatggtaccggtaccaaaac
agagatatagatcaatggaacagaacagagccctcagaaagttga

>gi568815591r_77919318|GENSCAN_predicted_peptide_6|176_aa
MIFSDNSKWLLTLSRSRPGLPKNHSQFLLAKSYSSFQPNYTPTHLTHMYNHGKWTEKKLI
PVDCEEADSHFVCKPGVWSHQVGAHTVHLSTLSSRPGVLNPWAMDWYHPIKNWATRQRSV
AALDSHRSRNPILNSECEGCRLSAPYENLMPDDVSLSPITPRWDHLVAGKQAQGSP

>gi568815591r_77919318|GENSCAN_predicted_CDS_6|531_bp
atgattttctctgacaactccaaatggcttctgacactttcccgttcacgtccaggtctc
cctaaaaatcattctcagtttttgttagcaaagtcatatagttcttttcagccaaattat
acacctacacacctaacacatatgtacaatcatggaaagtggactgagaagaagctgatt
ccagtggactgtgaagaagctgattctcattttgtttgcaaacctggtgtttggtcacac
caagtaggagcacataccgtccatctcagcactttgtcctctagaccaggggtcctcaac
ccctgggccatggactggtaccatcctattaagaactgggccacacggcagagatcagtg
gcagcattagactctcatagaagcaggaaccctatcttgaacagtgaatgtgaggggtgt
aggttgtccgctccttatgagaatctaatgcctgatgatgtgtcactgtcccccatcacc
cccagatgggaccatctagttgcaggaaaacaagctcagggctccccttga

GENSCAN 1.0	Date run:  5-Nov-116	Time: 23:21:58

Sequence gi568815591r_77919318 : 200302 bp : 35.41% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr + 1434037 1434167  131  1  2   82   70   106 0.177   7.69
 1.02 Intr + 1434212 1434329  118  0  1   79   72   115 0.325   8.12
 1.03 Term + 1457195 1457265   71  2  2   27   39   125 0.054  -1.38
 1.04 PlyA + 1457400 1457405    6                               1.05

 2.00 Prom + 1465118 1465157   40                              -2.85
 2.01 Sngl + 1474532 1474927  396  0  0   65   42   186 0.869   7.70
 2.02 PlyA + 1475196 1475201    6                               1.05

 3.08 PlyA - 1476342 1476337    6                               1.05
 3.07 Term - 1513365 1513150  216  2  0   75   48   117 0.356   2.56
 3.06 Intr - 1533430 1533252  179  1  2   54   72   112 0.449   4.92
 3.05 Intr - 1534037 1533667  371  0  2   65   44   459 0.557  33.02
 3.04 Intr - 1534922 1534757  166  2  1   93   68   214 0.560  18.00
 3.03 Intr - 1558281 1558189   93  0  0   48   49   111 0.091   2.22
 3.02 Intr - 1559018 1558901  118  1  1   89   66    33 0.293   0.32
 3.01 Init - 1562251 1562207   45  0  0   78  121    31 0.575   6.13
 3.00 Prom - 1567168 1567129   40                              -4.75

 4.03 PlyA - 1567700 1567695    6                               1.05
 4.02 Term - 1584401 1584333   69  1  0  112   36    85 0.872   2.66
 4.01 Init - 1590915 1590859   57  2  0   76  100    58 0.788   7.16
 4.00 Prom - 1592683 1592644   40                              -3.25

 5.04 PlyA - 1595081 1595076    6                               1.05
 5.03 Term - 1599787 1599656  132  0  0   99   33    77 0.179   0.41
 5.02 Intr - 1600778 1600723   56  2  2   79   92    48 0.177   2.08
 5.01 Init - 1605313 1605256   58  0  1   49  100    76 0.170   6.42
 5.00 Prom - 1607532 1607493   40                              -4.35

 6.04 PlyA - 1608031 1608026    6                               1.05
 6.03 Term - 1610193 1610036  158  0  2   89   48    54 0.080  -1.39
 6.02 Intr - 1619444 1619316  129  2  0  -14   89   138 0.173   3.45
 6.01 Intr - 1626395 1626285  111  2  0   71   80    79 0.554   4.83

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815591r_77919318|GENSCAN_predicted_peptide_1|106_aa
XMEEALLSLAVASSPRSLNQQLPELPDPRYILEPQDNPELAPALLWPPLLQGSDVSLRPA
VWSSGDLPALSQGAGAGDTAEIGGNPRSSSHEDVDGWISGEGDVND

>gi568815591r_77919318|GENSCAN_predicted_CDS_1|321_bp
ntcatggaggaagccttgctgtctctggctgtggcatcttctcccagatcccttaatcaa
caactcccagagcttccagacccaagatacattttggaaccccaggacaatcctgaactg
gcacccgccctgctatggccaccactgcttcaaggcagtgatgtttctctcaggcctgct
gtctggagctctggtgatcttcctgctctttcacaaggagcaggtgctggagatacagct
gagattgggggtaatcctagatcatcaagccatgaagatgtcgatggttggatttcagga
gaaggtgatgtcaatgactaa

>gi568815591r_77919318|GENSCAN_predicted_peptide_2|131_aa
MTQMSKIQLLGSALLKAQEKQSQVWVSIELLGSLALRWNCLCVQLEELMIINSSTSTHHV
LLELLPSHWCTRVLLRLGATSLSPNSGSQMEVARHLTWFYADSNPGIRPKTLDVDSDMSW
ATEVNSPEHVT

>gi568815591r_77919318|GENSCAN_predicted_CDS_2|396_bp
atgacccagatgtccaaaatacaacttttaggctccgctctgcttaaagcccaagaaaaa
cagagccaggtctgggtgtctatagagctactagggagcctagccttaagatggaattgt
ttgtgtgtccagcttgaagagttaatgatcatcaactcatcaacatcaactcatcatgta
ctgttagaactgctgccaagtcactggtgtacaagagttcttctaagacttggagccaca
agcttgtctcccaattcaggatcccagatggaagtagcccggcacctcacctggttctat
gcagactctaaccctggtattagacctaagactctagacgttgattctgacatgtcttgg
gcaactgaagtgaactctcctgaacatgtgacctaa

>gi568815591r_77919318|GENSCAN_predicted_peptide_3|395_aa
MRTIKDLVYDMEFSKDGSVVSGSATGSWCPNSFYSTDHNVWVLPAAKYFSLHTAPSRAQL
PARCRYPQNFIAYGMSSGPHKNLNQGSRARTLAEPEMWHQARHKSRSRYFCSIGAQVGGS
QRVLLAQEPGARLGRTEAEERSPGTEATRPTAMSKSLKKKSHWTSKVHESVIGRNPEGQL
GFELKGGAENGQFPYLGEVKPGKVAYESGSKLVSEELLLEVNETPVAGLTIRDVLAVIKH
CKDPLRLKCVKQGESSGLLSVLPGELLGQIECASVASPEADEELLGKGGRKKRKKEWEEG
RERRKEQLQGAAASPAGLGREGGGGLSEAVPLTQQAALLGSIPSRELVLVFSEKQGKPQA
SLTYHVVEMQPSHFFPKYYEQLHSGSHLQNSSAKK

>gi568815591r_77919318|GENSCAN_predicted_CDS_3|1188_bp
atgaggacaataaaagaccttgtatatgacatggaatttagcaaggatgggagtgtggtt
tctgggtctgctactggctcttggtgccctaatagcttttattccacagaccataatgta
tgggttctgccagctgctaagtatttctctttgcatactgcacctagcagagcacagctg
ccagcaagatgtcggtaccctcaaaacttcattgcttatggaatgtcgtctggaccacac
aagaatcttaatcagggatcccgcgccaggacgctcgcagagcccgagatgtggcaccag
gcgcgccacaagtccaggtcccgctatttctgctccatcggagcccaggtcggagggagt
cagcgcgtcctcctcgcacaggagcctggcgcgcggctcggtcgcacagaggctgaagaa
aggagcccaggaactgaggcgactcgccccactgccatgtccaaaagcttgaaaaagaaa
agccactggactagcaaagtccatgagagtgtcattggcaggaacccggagggccagctg
ggctttgaactgaaggggggcgccgagaatggacagttcccctacctgggggaggtgaag
cccggcaaggtggcctatgagagcggcagcaaattggtgtcggaggagctgctgctggag
gtgaacgagacccccgtggcggggctcaccatcagggacgtgctggccgtgatcaaacac
tgcaaggaccccctccggctcaagtgtgtcaagcaaggtgagagcagcggcttgctcagt
gttttgccgggcgagctgctggggcaaattgaatgtgcgtcagtggcatcacccgaagcg
gatgaagagcttttggggaagggaggaaggaagaaaagaaagaaagaatgggaggaaggg
agggaaagaaggaaggagcaacttcagggtgcagcggcatcaccagcgggtctgggaaga
gaaggtggtgggggtctttctgaggctgtccccttaacccaacaggcagccctcctgggc
agcatcccttcaagagaacttgtacttgttttttctgaaaagcaaggaaaacctcaggca
tccctgacctaccatgtagtggaaatgcagccatctcacttctttcccaaatattatgag
cagctccactcaggttcccaccttcagaattcttctgccaagaagtag

>gi568815591r_77919318|GENSCAN_predicted_peptide_4|41_aa
MKCCIATEKVLDIFEDLQKSTQCEDDEDEDLYDGLLLFHEL

>gi568815591r_77919318|GENSCAN_predicted_CDS_4|126_bp
atgaagtgttgcattgctacagagaaggtcttggacatctttgaagatctgcagaagtct
actcaatgtgaagatgatgaagatgaagacctttatgatggtctacttttatttcatgaa
ttgtaa

>gi568815591r_77919318|GENSCAN_predicted_peptide_5|81_aa
MERIADKIDIPETPGAMEKDYKPEHSHLAAKTIPAVYYAQGKGLMRIQGSCLQAREEPSP
ETETYFVMAVQIDQYRPQGPK

>gi568815591r_77919318|GENSCAN_predicted_CDS_5|246_bp
atggaaaggattgctgataagattgacatacctgagacaccaggagcaatggagaaagat
tacaagcctgagcatagtcatttagcagctaaaacaataccagcagtttactatgcacag
gggaaaggccttatgaggatacaaggtagctgtctgcaagccagggaagagccctcacca
gaaactgaaacctattttgttatggccgtccaaatagaccaatacaggccacaaggccct
aaatag

>gi568815591r_77919318|GENSCAN_predicted_peptide_6|132_aa
XYKYCQYYHNHLPLNSVFCVRNKKVVSGTMRHGIPVAAQLVPAPCKQEPETNSRGVEVEF
IRTKVYEKNQGDYAKYKGITSFSETLPLRSTNCDYLNEGKAIPPSSCLPAPLSSAPDRTL
QASFHSALKVAA

>gi568815591r_77919318|GENSCAN_predicted_CDS_6|399_bp
ncatataaatattgtcagtattatcacaaccacttaccactgaattcagtgttttgtgtc
aggaataaaaaggttgtatctggtacaatgcgacatggtatacccgtggcagcacagttg
gtacctgctccttgcaaacaagaaccagagactaactctagaggtgtagaggtagaattt
atccgaacaaaagtgtatgagaaaaatcagggggattatgcaaaatataaaggaataaca
agtttctcagagaccctcccactgagatctactaactgtgactacctaaatgagggcaaa
gccatcccaccctccagctgcttacctgcccctctcagctctgcacccgaccgcactctg
caggcatccttccattcagctctcaaggttgccgcatga