GENSCAN 1.0	Date run:  5-Nov-116	Time: 01:36:29

Sequence gi568815576r:44396840_44597556 : 200717 bp : 49.11% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   4962   5025   64  0  1   99  109    27 0.683   4.62
 1.02 Intr +  10461  10576  116  2  2   58   30   119 0.104   2.35
 1.03 Intr +  12550  12794  245  1  2   40   34   119 0.263  -1.16
 1.04 Intr +  38898  39081  184  1  1   25   98   162 0.616   9.75
 1.05 Intr +  42388  42521  134  1  2   22   94   103 0.701   4.59
 1.06 Intr +  44242  44349  108  2  0  116   74    17 0.501   3.36
 1.07 Intr +  70617  70662   46  1  1  110   70    25 0.003   0.37
 1.08 Intr +  75531  75654  124  0  1   17   37   100 0.005  -1.61
 1.09 Term +  83016  83279  264  2  0   13   39   654 0.994  48.51
 1.10 PlyA +  84110  84115    6                               1.05

 2.02 PlyA -  86623  86618    6                               1.05
 2.01 Sngl - 100717  99998  720  1  0  103   48   547 0.488  48.43
 2.00 Prom - 118956 118917   40                              -3.46

 3.00 Prom + 121070 121109   40                              -4.36
 3.01 Init + 131602 131694   93  0  0   72  113    59 0.408   7.19
 3.02 Term + 139460 139504   45  1  0  107   47    27 0.015  -2.29
 3.03 PlyA + 140619 140624    6                               1.05

 4.05 PlyA - 140834 140829    6                               1.05
 4.04 Term - 141325 141194  132  1  0   36   39   169 0.770   4.89
 4.03 Intr - 143893 143819   75  1  0   65   70    56 0.504   1.21
 4.02 Intr - 147631 147578   54  1  0   91   94    44 0.592   4.48
 4.01 Init - 153140 152979  162  2  0   69   26   135 0.448   5.13
 4.00 Prom - 164555 164516   40                              -6.66

 5.00 Prom + 166627 166666   40                              -5.66
 5.01 Init + 168821 168828    8  1  2   55   70     0 0.267  -4.60
 5.02 Intr + 170126 170209   84  2  0   88   65   109 0.954   7.54
 5.03 Intr + 170411 170828  418  2  1   66   61   672 0.929  56.33
 5.04 Term + 170848 171411  564  0  0  -24   48   935 0.893  72.69
 5.05 PlyA + 171451 171456    6                               1.05

 6.00 Prom + 171868 171907   40                              -6.86
 6.01 Init + 174089 174189  101  1  2   53   41    97 0.609   1.23
 6.02 Intr + 174341 174493  153  2  0   80   71    58 0.751   2.49
 6.03 Intr + 174537 174653  117  0  0   46  105   103 0.930   7.38
 6.04 Intr + 175770 175971  202  0  1   83   81    63 0.600   4.39
 6.05 Intr + 183529 183690  162  0  0   92   36    76 0.320   2.97
 6.06 Intr + 187065 187161   97  2  1   53   18    95 0.101  -1.42
 6.07 Intr + 189620 189745  126  0  0   81   98    23 0.156   3.25
 6.08 Intr + 193203 193408  206  1  2    2   80   118 0.302   1.32
 6.09 Intr + 194067 194158   92  2  2   82   49    62 0.823   0.49
 6.10 Term + 194719 194890  172  1  1   95   53   113 0.454   5.80
 6.11 PlyA + 197393 197398    6                              -0.45


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init + 101257 101376  120  0  0  100   61   172 0.897  13.91


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815576r:44396840_44597556|GENSCAN_predicted_peptide_1|428_aa
XSKIQAQAGPSEFSFAVWESEQSSVGVYTLILLTRSLALWSALADGTAAETHEQTIRELT
CREQPRRSLALLSPAALTPVLSQASLLQELAAADASSPSGREKSIMANPTPPVIPELCAV
ERLAPNPLWPPPSTSLPLRTGAEFQIDNTLLESAFGKDAEVFGGAREHKARCLVRLRIYV
ASASHFLPFSASDEENQVRLDSRGFSICVMAMPKVAHVETFSVAGTTLGPQHPPLIHTAI
RRHHPSSPAAALSGENGDEGGGPGFHTTHSRLWLGLQEGRDRPYVRLDFQSNAEEKWGSR
PQYSSPLKDATTRRHFGSREQPSPDTNPADTLILDLLASRTRLYRSVITTIITITIITTI
TIIIITIITIINITIITIITIIIIIIAIITIIIITIITIIIIIMLEETFLKHLDDTWTWQ
TWIQDDLR

>gi568815576r:44396840_44597556|GENSCAN_predicted_CDS_1|1287_bp
nnctcaaaaatccaggcacaggctggaccctcagaattctccttcgcggtttgggagtcg
gagcagagttcagtgggggtctacactctcatcctgctgactcggagcctggccttgtgg
tctgctttggcagatggaacagcagccgagacacacgagcagaccatccgcgagcttacg
tgtagagagcagcccagacgaagtctggccctgctgagcccagcagccctcacacctgtg
ctcagccaagccagcctgctgcaggagttggctgcggctgatgccagctcgccctcaggc
cgagaaaaatccatcatggctaatcccactcccccagtgattcctgagctgtgtgccgtg
gaaaggctggccccaaatcctctctggcctccccccagcaccagccttcctctgcgaacc
ggggcggaatttcaaattgataacactctcttagaatcggcgtttggcaaggacgctgag
gtttttggaggagcacgggaacataaagcaaggtgcctggtgcggctccggatttatgta
gcctcagcatcccatttcttgccattttctgcttcggatgaagagaatcaagtacgtctg
gattcccggggtttctccatctgtgtcatggcgatgccaaaggtagcccacgtggagacc
ttctctgtggcaggcacaactctaggtcctcagcatcctcctttaatccacacggcaatt
cgacgccatcaccccagttctccagccgcagctttgtcgggggagaatggggatgaaggt
gggggccctggtttccataccacccacagcagactctggctcgggcttcaagagggcagg
gaccggccctatgtaaggcttgattttcagtccaatgctgaagagaagtgggggagcagg
ccacagtattcctccccactaaaggatgctacaacaagacgccattttggaagcagagag
cagccctcaccagacaccaatcctgctgacaccttgatcttggaccttctggcctccaga
actaggctatacaggagtgtcatcaccaccatcatcaccatcaccatcatcaccaccatc
accatcatcatcatcaccatcatcaccatcatcaacatcaccatcatcaccatcatcacc
atcatcattatcatcatcgccatcatcaccatcatcattatcaccataatcaccatcatc
atcatcattatgctagaagagacgtttctcaaacatctggatgatacctggacgtggcag
acatggatccaagatgatctcagatag

>gi568815576r:44396840_44597556|GENSCAN_predicted_peptide_2|239_aa
MVQPQTSKAESPALAASPNAQMDDVIDTLTSLRLTNSALRREASTLRAEKANLTNMLESV
MAELTLLRTRARIPGALQITPPISSITSNGTRPMTTPPTSLPEPFSGDPGRLAGFLMQMD
RFMIFQASRFPGEAERVAFLVSRLTGEAEKWAIPHMQPDSPLRNNYQGFLAELRRTYKSP
LRHARRAQIRKTSASNRAVRERQMLCRQLASAGTGPCPVHPASNGTSPAPALPARARNL

>gi568815576r:44396840_44597556|GENSCAN_predicted_CDS_2|720_bp
atggtgcagccgcagacgtccaaagctgaaagcccagccttggcagcgtctccgaatgcc
cagatggatgacgttattgacaccctgacctccctgcgcctcaccaactcggcgctgagg
cgggaggcttccaccctgcgggcggagaaggccaatctcaccaacatgctggagagcgtg
atggcagagctgaccttgttacgcaccagggcgcggatcccgggggctctgcagatcacc
ccgcccatctcctcaattacttcaaacgggactcgacccatgaccacacctccaacctct
ctgcccgagcccttttccggggacccaggccggttggcggggttcctgatgcagatggac
agattcatgatcttccaggcctcccgcttcccgggtgaggccgagcgtgtggccttcctt
gtgtctcgactgactggggaggcggagaagtgggctatcccccacatgcaacctgacagc
cccttgcgcaacaactatcaggggttcctggcagagttgcggagaacctacaagtctccg
ctccggcatgcgcggcgcgcccaaatcaggaagacttctgcctctaatagggctgtgcga
gagaggcagatgctctgccgccagctggcctctgcgggcacggggccttgcccagtgcat
ccagcttccaacgggactagtccagcgccagccctgcctgcccgagcacggaatctttaa

>gi568815576r:44396840_44597556|GENSCAN_predicted_peptide_3|45_aa
MLKAEMEWVKEAFLKALTFDLRPGRGAGTSHDQEPAPTARSWSQA

>gi568815576r:44396840_44597556|GENSCAN_predicted_CDS_3|138_bp
atgctgaaggctgagatggaatgggttaaggaagccttcttgaaggcgttgacctttgat
ttgagacctggacgaggagcaggtaccagccacgaccaagaacctgcccccacggcccgt
tcttggagccaggcttga

>gi568815576r:44396840_44597556|GENSCAN_predicted_peptide_4|140_aa
MDIGQWTQTLPLRKEEKEHLGHQLAPRHCGPQSGESLSLLGAPGESFEKGMLRGMAPGLS
NDTMLSNADDAEAREALANASVFGGGHAGLPGRALCRANRFPVPLLTTFSLALKKSVFGS
LLRRWRLLGDKRLSDAFNKT

>gi568815576r:44396840_44597556|GENSCAN_predicted_CDS_4|423_bp
atggatataggacaatggacacagacactcccactcaggaaagaggagaaggagcatctg
gggcaccagcttgcaccgaggcactgtggaccacagtctggcgagagcctgagcctgctg
ggggccccaggggagagcttcgagaagggaatgcttcgagggatggccccaggcctctca
aatgacacaatgctgagcaatgctgatgatgcagaggccagagaggctcttgccaatgcc
agtgtatttggtggaggccatgctggccttcctggaagagccctgtgcagagcaaacagg
tttccagtcccgctgctgacgaccttctcattggcattgaaaaagagcgttttcggctcc
ctgctcagacgctggcggcttctgggtgacaagcggctgtcagatgcttttaacaagact
tag

>gi568815576r:44396840_44597556|GENSCAN_predicted_peptide_5|357_aa
MPSLSFTTCSTFSTNYRSLGPAQAPSYGTGRVRHLETKNRKLESKIWEHLEKKGPQVRDW
SHYFKTIRNQRAQSLAITVDNACIVLQINNTHLAADDFRVKYETELAMCQSVESNIHGLC
KVNDDTNVTRLQLETEIKALKEELLFMKKNHEEEVKGLQAQIASSGLTMEHLAKIMAAIR
AQYDELAWKNGEELDKYLSQQIEESTTVVTTQSAKAGAAEMTLTELRCTVQSLEINLNSM
RNLKASLENSVREVKACYTLQMEQLNGILLHLGSELAQTQAKGQCQAQEYEALLNIKVKL
EAEIATYCHLLEDGKDFNLGDALDSSNSMQTIPKTTTHQRVDGKVVSETNDTKVLRH

>gi568815576r:44396840_44597556|GENSCAN_predicted_CDS_5|1074_bp
atgcccagcttgagcttcaccacttgctccacattctccaccaactaccgatccctgggc
cctgcccaggcgcccagctacggcaccggccgagtgaggcacctggagaccaagaaccgg
aagctggagagcaaaatctgggagcacctggagaagaagggaccccaggtcagagactgg
agccattacttcaagaccatcaggaaccagagggctcagagcttggcaattactgtagac
aatgcctgcattgttctgcagatcaacaacacccatcttgctgctgatgactttagagtc
aagtatgagacagagctggccatgtgccagtctgtggagagcaacatccatggactctgt
aaggtcaatgatgacaccaacgtcactcggctgcagctggagacagagatcaaggctctc
aaggaggagctgctcttcatgaagaagaaccacgaagaggaagtaaaaggcctacaagcc
cagattgctagctctgggttgaccatggagcacctcgccaagatcatggcagccatccgg
gcccaatatgacgagctggcttggaagaacggagaggagctggacaagtacttgtctcag
cagattgaggagagcaccacagtggtcaccacgcagtctgccaaggctggagctgctgag
atgacgctcacagagctgagatgtacagtccagtccttggagatcaacctgaactccatg
agaaatctgaaagccagtttggagaacagcgtgagggaggtgaaggcctgctacaccttg
cagatggagcagctcaacgggatcctgctgcacctggggtcagagctggcacagacccag
gcaaagggacagtgccaggcccaggagtatgaggccctgctgaacatcaaggtcaagctg
gaggctgagatcgccacctactgccacctgctggaagatggcaaggacttcaatcttgga
gatgccctggacagcagcaactccatgcaaaccattccaaagaccaccacccaccagaga
gtggatggcaaagtggtgtctgagaccaacgacaccaaagttctgagacattaa

>gi568815576r:44396840_44597556|GENSCAN_predicted_peptide_6|475_aa
MLTIAKHDAGLIGEAKKSSSFQSLIREEKGHEGRAPGKTFSPTGLPLEYPLLPHWKVFCF
LELGLPREEEKMVHVPREPMMCRPSPTHFTDEEMEAREMKLADFLWNFLWTSGGTSCQQS
RLDWLSWVCPRGNGRGAGEQAEGTQPPETQLKVGHSHFRFVLLTNMDHRAKPRVRGGQAN
PAPVKRAAPKKERKLRLGPGMPESGFEPTSFSPDPQVTLSTSLPPEGTGEQKPLEAIRVH
GAMGQAEPPAALPYAAPSKPLMVPAIAPYCPRPSQTTATEAQSSFSVGSTHRQPHLSSSA
LSCPSPDHLLPPPSKRTQQVPEETLELAERSDRPQARPSGPSSHASTGTKGLLHLAQLAN
LTMQGLQPHLANGKAHIRLANLSEAIRQNLLQSLRHTVAYESGCFSAIKGWKQHLGQGSC
PTASMNWEVKDASFRTLPGCPACDHTAADPSPRKALPHSAAGRPPIQPPVLARRL

>gi568815576r:44396840_44597556|GENSCAN_predicted_CDS_6|1428_bp
atgctaacaatagccaagcacgatgccggcctgattggagaggctaaaaaaagcagctca
ttccaaagcctcatcagggaagaaaagggccacgaaggcagggcaccggggaagaccttc
agccctactgggctaccccttgagtaccctctcctcccacattggaaggtcttctgcttc
ctggagcttggcctgcctcgggaggaggagaaaatggtccatgtccccagagagcccatg
atgtgccggcctagccctacccactttacggatgaggaaatggaggctcgggagatgaag
ctggcagacttcctctggaacttcctctggacatctggagggacgtcctgtcagcagagc
aggctggactggctgagctgggtgtgtcctcgtggcaatggcagaggtgcaggagagcaa
gcagagggtacacagccccccgagactcagctcaaggtgggccacagccacttccgcttt
gtcctgttgaccaacatggatcacagggccaagcccagagtgagaggtgggcaggccaac
ccagccccggtgaaacgggcagctccaaagaaggagaggaagctgaggctggggccaggc
atgccggagtcaggatttgaacccacatcattcagtcccgatccccaggtcaccctgagc
acctctcttcctcccgaaggcactggagagcagaagcccttggaagccatcagagtccat
ggagctatggggcaggcagagccaccagcagctctcccgtacgctgctccaagcaagccc
ttaatggtccccgccatcgccccctactgcccccgacccagccagaccacagccactgaa
gcacagagctccttctcagtgggaagcactcaccgccagccccacctttccagctcggcg
ctctcatgccccagccccgaccatctcttgccccctccttccaaacgaacacagcaagtc
ccagaggagaccctcgagttagcagagaggtcggacagacctcaggccagaccttctggg
ccctccagccatgcaagcactggcaccaagggtctgctccatcttgcacagttagccaac
ctcacaatgcaagggctacagccccacttggcaaatggcaaagctcacatcagactggcc
aacttgtctgaggctatacggcaaaaccttctgcagagcctgaggcacaccgtggcctat
gagagcgggtgctttagtgcaatcaagggctggaagcaacacttgggccaaggcagctgc
ccaaccgcctccatgaactgggaggtaaaagacgcctccttccgcaccctgccgggctgt
cctgcctgtgaccacactgctgccgacccaagtcctcgcaaggccctgccccactctgca
gcaggcaggcccccaattcagccccctgtccttgcccggagactctga