GENSCAN 1.0	Date run:  3-Nov-116	Time: 13:32:11

Sequence gi568815583r:66448493_66665365 : 216873 bp : 46.52% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Sngl +   1549   2982 1434  0  0   42   49   501 0.849  37.42
 1.02 PlyA +   3027   3032    6                              -0.45

 2.00 Prom +   3323   3362   40                              -2.46
 2.01 Init +   3447   3579  133  2  1   78   47    40 0.018  -0.80
 2.02 Intr +  14735  14786   52  0  1   60   98    35 0.004  -0.33
 2.03 Intr +  28650  28720   71  0  2  108   92     3 0.004   1.53
 2.04 Intr +  33263  33387  125  0  2  134   68   230 0.949  25.90
 2.05 Intr +  36498  36638  141  2  0   89   44    57 0.709   1.95
 2.06 Term +  42010  42123  114  0  0   95   42   112 0.939   5.87
 2.07 PlyA +  43012  43017    6                               1.05

 3.03 PlyA -  45347  45342    6                               1.05
 3.02 Term -  46060  45944  117  1  0   68   43   186 0.999  10.64
 3.01 Init -  49239  49150   90  0  0   97   55   197 0.985  17.79
 3.00 Prom -  50419  50380   40                             -11.92

 4.08 PlyA -  50859  50854    6                               1.05
 4.07 Term -  51160  50915  246  1  0   76   37   314 0.981  20.89
 4.06 Intr -  51684  51564  121  2  1   69   82    83 0.999   6.30
 4.05 Intr -  52613  52457  157  0  1   78  108    83 0.999   8.37
 4.04 Intr -  53012  52883  130  2  1   34   51   189 0.559  10.07
 4.03 Intr -  53420  53296  125  0  2   57   73   181 0.999  13.80
 4.02 Intr -  55037  54866  172  2  1  105   80   235 0.999  23.92
 4.01 Init -  56298  56296    3  0  0   98  101     0 0.815   2.30
 4.00 Prom -  62490  62451   40                              -5.46

 5.00 Prom +  66913  66952   40                              -1.46
 5.01 Init +  70409  70477   69  1  0   91   86   -12 0.650  -0.04
 5.02 Intr +  72558  72713  156  2  0   87   99    81 0.978   9.31
 5.03 Intr +  81194  81259   66  1  0   80  116    21 0.754   3.20
 5.04 Intr +  83755  83911  157  0  1   60   97    50 0.747   2.68
 5.05 Term +  84965  84990   26  0  2   87   42    23 0.220  -4.01
 5.06 PlyA +  85455  85460    6                               1.05

 6.12 PlyA -  86361  86356    6                               1.05
 6.11 Term -  91537  91514   24  1  0   91   44    29 0.297  -2.98
 6.10 Intr -  98303  98163  141  2  0   54   91    68 0.686   4.25
 6.09 Intr - 103369 103170  200  2  2   53   80   115 0.942   6.27
 6.08 Intr - 109391 109230  162  0  0  128   85   134 0.999  17.05
 6.07 Intr - 109544 109490   55  2  1  117  105    30 0.779   6.15
 6.06 Intr - 112609 112514   96  1  0   82  100    87 0.872   9.51
 6.05 Intr - 112823 112695  129  2  0   97  102   153 0.995  18.49
 6.04 Intr - 115133 115024  110  0  2   69   94   111 0.992   9.80
 6.03 Intr - 115506 115419   88  0  1   99   83    51 0.719   5.24
 6.02 Intr - 116347 116184  164  2  2   70  109   119 0.994  11.89
 6.01 Init - 116873 116756  118  2  1  109   60   173 0.998  14.96
 6.00 Prom - 122787 122748   40                              -2.06

 7.04 PlyA - 124049 124044    6                               1.05
 7.03 Term - 126211 126092  120  1  0   89   48    72 0.366   1.77
 7.02 Intr - 138818 138502  317  0  2  -68    3   423 0.495  13.98
 7.01 Init - 140638 140578   61  1  1   78  110    43 0.972   6.91
 7.00 Prom - 142246 142207   40                              -6.86

 8.04 PlyA - 142480 142475    6                               1.05
 8.03 Term - 143509 143426   84  1  0   49   49   116 0.267   1.45
 8.02 Intr - 145529 145445   85  1  1  111   76    23 0.165   3.22
 8.01 Init - 155995 155895  101  1  2   54  108    49 0.189   3.24
 8.00 Prom - 160789 160750   40                              -7.06

 9.00 Prom + 161225 161264   40                               2.14
 9.01 Init + 162335 162342    8  1  2  103   91     0 0.469   2.30
 9.02 Intr + 170928 171041  114  0  0   59   85    53 0.348   1.66
 9.03 Intr + 173469 173555   87  0  0   88   41    63 0.258   0.69
 9.04 Intr + 173876 173969   94  2  1   70   49    60 0.330   0.27
 9.05 Intr + 181306 181390   85  0  1  105   23    96 0.400   4.19
 9.06 Intr + 187621 187720  100  2  1   93   98    34 0.486   4.07
 9.07 Term + 193419 193554  136  0  1   66   46    80 0.132  -0.91
 9.08 PlyA + 194712 194717    6                              -0.45

10.04 PlyA - 195081 195076    6                               1.05
10.03 Term - 195644 195479  166  1  1   77   42   110 0.216   2.69
10.02 Intr - 204134 203992  143  2  2   76   32   149 0.489   7.25
10.01 Init - 216575 216540   36  2  0   61   96    56 0.466   3.71

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815583r:66448493_66665365|GENSCAN_predicted_peptide_1|477_aa
MIISIDAEKAFDKIQQPFMLKTLNKLGIDGTYFKIIRAIYDIPTANIIPNGQKLEAFPLK
TGTRQGCPLSPLLFNIVLEVLARAIRQEKEIKGIQLGKEEVKLSLFADDMIVYLENPIVS
AQNLLKLISNFSKVSGYKINVQKSQAFLYTNNRQTESQIMSELPFTIASKRIKYLGIQLT
RDVKDLFKENYKPLLKEIKEDTNKWKNIPCSWVGRINIVKMAILPKVIYRFNAIPIKLPM
TFFTELEKTTLKFIWNQKRARIAKSILSQKNKAGGITLPDFKLYYKATVTKTAWYWYQNR
DIDQWNRTEPSEIMPHIYNYLIFDKPEKNKQWGKDSLFNKWCWENWLAICRKLKLDPFLT
PYTKINSRWIKDLNVRPKTIKTLEENLGITIQDIGVGKDFMSKTPKAMATKAKIDKWDLI
KLKSFCTAKETTIRVNRQPTTWEKIFATYSSDKGLISRIYNELKQIYKKKTTPSKSG

>gi568815583r:66448493_66665365|GENSCAN_predicted_CDS_1|1434_bp
atgattatctcaatagatgcagaaaaagcctttgacaaaattcaacaacccttcatgcta
aaaactctcaataaattaggtattgatgggacgtatttcaaaataataagagctatctat
gacatacccacagccaatatcataccgaatgggcaaaaactggaagcattccctttgaaa
actggcacaagacagggatgccctctctcaccactcctattcaacatagtgttggaagtt
ctggccagggcaatcaggcaggagaaggaaataaagggtattcaattaggaaaagaggaa
gtcaaattgtccctgtttgcagacgacatgattgtttatctagaaaaccccatcgtctca
gcccaaaatctccttaagctgataagcaacttcagcaaagtctcaggatacaaaatcaat
gtacaaaaatcacaagcattcttatacaccaacaacagacaaacagagagccaaatcatg
agtgaactcccattcacaattgcttcaaagagaataaaatacctaggaatccaacttaca
agggatgtgaaggacctcttcaaggagaactacaaaccactgctcaaggaaataaaagag
gacacaaacaaatggaagaacattccatgctcatgggtaggaagaatcaatatcgtgaaa
atggccatactgcccaaggtaatttacagattcaatgccatccccatcaagctaccaatg
actttcttcacagaattggaaaaaactactttaaagttcatatggaaccaaaaaagagcc
cgcatcgccaagtcaatcctaagccaaaagaacaaagctggaggcatcacactacctgac
ttcaaactatactacaaggctacagtaaccaaaacagcatggtactggtaccaaaacaga
gatatagatcaatggaacagaacagagccctcagaaataatgccacatatctacaactat
ctgatctttgacaaacctgagaaaaacaagcaatggggaaaggattccctatttaataaa
tggtgctgggaaaactggctagccatatgtagaaagctgaaactggatcccttccttaca
ccttatacaaaaatcaattcaagatggattaaagatttaaacgttagacctaaaaccata
aaaaccctagaagaaaacctaggcattaccattcaggacataggcgtgggcaaggacttc
atgtccaaaacaccaaaagcaatggcaacaaaagccaaaattgacaaatgggatctaatt
aaactcaagagcttctgcacagcaaaagaaactaccatcagagtgaacaggcaacctaca
acatgggagaaaattttcgcaacctactcatctgacaaagggctaatatccagaatctac
aatgaactcaaacaaatttacaagaaaaaaacaaccccatcaaaaagtgggtga

>gi568815583r:66448493_66665365|GENSCAN_predicted_peptide_2|211_aa
MEYYAAIKNDEFMSFVGTWMKLETIILSKLSQEQKTKHRIFSLIDWKDSRIYVKREDISI
EQQCFSLERVGEAGADSQGWWQAVLYVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFV
GTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVHAFIK
RSDAEEVDFAGWLCSTIGLNQPSTPTHAAGV

>gi568815583r:66448493_66665365|GENSCAN_predicted_CDS_2|636_bp
atggaatactatgcagccataaaaaatgatgagttcatgtcctttgtagggacatggatg
aaattggaaaccatcattctcagtaaactatcgcaagaacaaaaaaccaaacaccgcata
ttctcactcatagactggaaggacagtaggatatacgtgaagagagaagatatctcgatt
gaacagcagtgtttttccctggagcgggtgggagaagctggagctgacagccagggatgg
tggcaagctgtgttatatgtcaagccctccaacatcctagtcaactcccgtggggagatc
aagctctgtgactttggggtcagcgggcagctcatcgactccatggccaactccttcgtg
ggcacaaggtcctacatgtcgccagaaagactccaggggactcattactctgtgcagtca
gacatctggagcatgggactgtctctggtagagatggcggttgggaggtatcccatccct
cctccagatgccaaggagctggagctgatgtttgggtgccaggttcatgcttttatcaag
agatctgatgctgaggaagtggattttgcaggttggctctgctccaccatcggccttaac
cagcccagcacaccaacccatgctgctggcgtctaa

>gi568815583r:66448493_66665365|GENSCAN_predicted_peptide_3|68_aa
MLSRLQELRKEEETLLRLKAALHDQLNRLKMLVHVDNEASINQTTLELSTKSHVTEEEEE
EEEEESDS

>gi568815583r:66448493_66665365|GENSCAN_predicted_CDS_3|207_bp
atgctgagccggcttcaggaactgcgcaaggaggaggagacgctgctgcggttgaaggca
gccctgcacgaccagctgaaccgcctcaagatgttggtgcatgtagacaatgaagcatca
atcaaccaaacaaccctggagctgagcacaaagagtcatgtgacggaagaggaggaggag
gaagaggaagaagaatcagattcctaa

>gi568815583r:66448493_66665365|GENSCAN_predicted_peptide_4|317_aa
MACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGH
RIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRI
QRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLDE
LYGTWRKAASLKSNYNKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKLR
VDKAAAAAAALQAKSDEKAAVAGKKPVVGKKGKKAAVGVKKQKKPLVGKKAAATKKPAPE
KKPAEKKPTTEEKKPAA

>gi568815583r:66448493_66665365|GENSCAN_predicted_CDS_4|954_bp
atggcgtgtgctcgcccactgatatcggtgtactccgaaaagggggagtcatctggcaaa
aatgtcactttgcctgctgtattcaaggctcctattcgaccagatattgtgaactttgtt
cacaccaacttgcgcaaaaacaacagacagccctatgctgtcagtgaattagcaggtcat
cgtattgaggaagttcctgaacttcctttggtagttgaagataaagttgaaggctacaag
aagaccaaggaagctgttttgctccttaagaaacttaaagcctggaatgatatcaaaaag
gtctatgcctctcagcgaatgagagctggcaaaggcaaaatgagaaaccgtcgccgtatc
cagcgcaggggcccgtgcatcatctataatgaggataatggtatcatcaaggccttcaga
aacatccctggaattactctgcttaatgtaagcaagctgaacattttgaagcttgctcct
ggtgggcatgtgggacgtttctgcatttggactgaaagtgctttccggaagttagatgaa
ttgtacggcacttggcgtaaagccgcttccctcaagagtaactacaacaagaagatccat
cgcagagtcctaaagaagaacccactgaaaaacttgagaatcatgttgaagctaaaccca
tatgcaaagaccatgcgccggaacaccattcttcgccaggccaggaatcacaagctccgg
gtggataaggcagctgctgcagcagcggcactacaagccaaatcagatgagaaggcggcg
gttgcaggcaagaagcctgtggtaggtaagaaaggaaagaaggctgctgttggtgttaag
aagcagaagaagcctctggtgggaaaaaaggcagcagctaccaagaaaccagcccctgaa
aagaagcctgcagagaagaaacctactacagaggagaagaagcctgctgcataa

>gi568815583r:66448493_66665365|GENSCAN_predicted_peptide_5|157_aa
MAHNPNMTHLKINLPVTALPPLWVTSKGFAQYELFKSSALDDTITASQTAIALDISWSPV
DEILQIPPLSSTATLLCKVRQVPLLFLCPNILICKVKLHSGSNSLLSKLIHQSYHGTMDT
VSLSGTIPVQMLLEIGLDKLKKDYISFFIAHSETSES

>gi568815583r:66448493_66665365|GENSCAN_predicted_CDS_5|474_bp
atggctcacaatcctaatatgacccatttgaagattaatctgccagttactgcccttcct
cccctttgggtaacatccaaaggctttgcccagtatgagctctttaagtcctctgccttg
gatgatacaatcacagcatcacaaactgcgatcgctttggatatttcctggagtcctgtg
gatgagattcttcaaatccctccactctcttcaactgcaactctgctgtgtaaagttcgg
caggttcctttacttttcttgtgccccaacatcctcatctgtaaagtaaagctccatagt
ggaagtaacagtttactaagtaagctcattcatcagtcttatcatggaaccatggacaca
gtttctctcagtgggactattccagttcaaatgcttttggaaattggtttggacaaacta
aagaaagattatatcagttttttcatagcccattcagaaacttcagaaagttga

>gi568815583r:66448493_66665365|GENSCAN_predicted_peptide_6|428_aa
MKPVWVATLLWMLLLVPRLGAARKGSPEEASFYYGTFPLGFSWGVGSSAYQTEGAWDQDG
KGPSIWDVFTHSGKGKVLGNETADVACDGYYKVQEDIILLRELHVNHYRFSLSWPRLLPT
GIRAEQVNKKGIEFYSDLIDALLSSNITPIVTLHHWDLPQLLQVKYGGWQNVSMANYFRD
YANLCFEAFGDRVKHWITFSDPRAMAEKGYETGHHAPGLKLRGTGLYKAAHHIIKAHAKA
WHSYNTTWRSKQQGLVGISLNCDWGEPVDISNPKDLEAAERYLQFCLGWFANPIYAGDYP
QVMKDYIAIKDGANIKGYTSWSLLDKFEWEKGYSDRYGFYYVEFNDRNKPRYPKASVQYY
KKIIIANGFPNPREQIDIDNVERTKRKVLITKYLTKRLKCEHKYLIEDFISTLHLKCTWL
QPFSEVFM

>gi568815583r:66448493_66665365|GENSCAN_predicted_CDS_6|1287_bp
atgaagccagtgtgggtcgccacccttctgtggatgctactgctggtgcccaggctgggg
gccgcccggaaggggtccccagaagaggcctccttctactatggaaccttccctcttggc
ttctcctggggcgtgggcagttctgcctaccagacggagggcgcctgggaccaggacggg
aaagggcctagcatctgggacgtcttcacacacagtgggaaggggaaagtgcttgggaat
gagacggcagatgtagcctgtgacggctactacaaggtccaggaggacatcattctgctg
agggaactgcacgtcaaccactaccgattctccctgtcttggccccggctcctgcccaca
ggcatccgagccgagcaggtgaacaagaagggaatcgaattctacagtgatcttatcgat
gcccttctgagcagcaacatcactcccatcgtgaccttgcaccactgggatctgccacag
ctgctccaggtcaaatacggtgggtggcagaatgtgagcatggccaactacttcagagac
tacgccaacctgtgctttgaggcctttggggaccgtgtgaagcactggatcacgttcagt
gatcctcgggcaatggcagaaaaaggctatgagacgggccaccatgcgccgggcctgaag
ctccgcggcaccggcctgtacaaggcagcacaccacatcattaaggcccacgccaaagcc
tggcattcttataacaccacgtggcgcagcaagcagcaaggtctggtgggaatttcattg
aactgtgactggggggaacctgtggacattagtaaccccaaggacctagaggctgccgag
agatacctacagttctgtctgggctggtttgccaaccccatttatgccggtgactacccc
caagtcatgaaggactacattgctataaaagatggtgctaatataaaggggtatacttcc
tggtctctgttggataagtttgaatgggagaaaggatactcagatagatatggattctac
tatgttgaatttaacgacagaaataagcctcgctatccaaaggcttcagttcaatattac
aagaagattatcattgccaatgggtttcccaatccaagagagcaaatcgacattgataat
gtagaaagaactaaacgtaaggtacttattacaaagtatttgacaaagagactaaaatgt
gaacataaataccttatagaggacttcatcagcacacttcacttgaaatgcacctggctg
cagccatttagtgaagtcttcatgtga

>gi568815583r:66448493_66665365|GENSCAN_predicted_peptide_7|165_aa
MTGSQQWDVRSNGCYFLVKAEEREEKEEEGEEEKEGEEDKEEEKEEEKEEEKRKKEKEKQ
EEEGKKKRKKEEEEKEEEEEEGEEEGEKEEEGEKEEEEGEKEEEEEEGENGEGEKGGRGG
GEGGREPPPFTLQKLEAEDLAGIFSSQPWGSPQVEMGGEKCKARS

>gi568815583r:66448493_66665365|GENSCAN_predicted_CDS_7|498_bp
atgactggttctcagcaatgggatgtgagaagtaatgggtgttacttcctggtcaaggca
gaagagagagaagagaaggaggaggagggggaggaagagaaggagggggaggaagataag
gaggaagagaaggaggaggagaaggaagaggagaagaggaagaaagagaaggagaagcag
gaggaggaggggaagaagaagaggaagaaagaggaggaggagaaggaggaggaggaagag
gagggggaggaggaaggggagaaggaagaggaaggggagaaggaggaagaggaaggggag
aaggaggaggaggaagaggagggggagaatggggagggggagaaggggggaaggggaggg
ggagaagggggaagggaacctcctcctttcacccttcagaaactggaagcagaggacttg
gctggcatcttcagcagccagccatggggttccccacaggtggaaatggggggagaaaaa
tgcaaggcacgatcctga

>gi568815583r:66448493_66665365|GENSCAN_predicted_peptide_8|89_aa
MRIISFDSQNHPTHQVLTSPLYKQGNEGPATLGKRPEFLFPEVCSLLLSVDRHQVLHDPF
YQETSKDKFPEYLDGADGEDTDAAITLPT

>gi568815583r:66448493_66665365|GENSCAN_predicted_CDS_8|270_bp
atgaggatcatctcctttgattctcagaaccaccctacacaccaggtactcacatcccca
ctttacaagcaaggaaatgaaggcccagcaacattgggcaaacggcctgaattcctcttc
cctgaggtctgcagcctcctgctctcagtagacaggcaccaggttctccatgatcctttc
taccaggagacatctaaggacaaattccctgaatacttggatggagctgatggcgaagac
accgatgctgccatcactttgcccacctga

>gi568815583r:66448493_66665365|GENSCAN_predicted_peptide_9|207_aa
MPSLGSQPGKPSPGGAATCTRFEARTLRFPGVVTLVEQGPWASTPRLRKGQLCPHRAPRG
LAERNRVTERAAVATGRSRLIGRPCEPAADPAWPSPGCPSQSWSPVLTAESILNCAAKHR
GMGVVELLREAYLRITEEGYCLDSQQSVFSECKIPQTPDSSQQAWDGFSPLLTSGQGHPG
VGKPVVEDIQRQCGLEFALFPAQPSRP

>gi568815583r:66448493_66665365|GENSCAN_predicted_CDS_9|624_bp
atgcccagcctcgggtcacagccagggaaacccagccccggaggcgcagcaacctgcacc
cgtttcgaggcccgcactttgcgcttcccaggggttgttaccctggtcgagcaaggtccc
tgggcgtcaactccccgtctgcggaaagggcagctttgtccccatcgcgcccctcgaggc
ctggctgagaggaaccgggtgaccgagagggccgccgtggcgacgggccgctcccgcctt
atcggccgcccctgcgagcccgcggccgaccccgcctggccctccccgggctgcccctcc
cagagctggtcccctgtgctgacagcagagagtattctcaactgtgcagcaaagcaccgg
ggcatgggggtggtggagctgctccgggaggcctatttgagaattactgaggaagggtac
tgcttggactcacagcagagtgtgttctccgaatgtaagataccccaaactcctgacagc
tctcaacaggcttgggatggcttttctcctctgctgacctctggccagggccaccctggt
gtgggcaaaccagtggtggaggacatccagagacaatgtggcctggagtttgccttgttc
cctgctcagccctccaggccctaa

>gi568815583r:66448493_66665365|GENSCAN_predicted_peptide_10|114_aa
MKKKEKKEKIIQSPDKLQILQEEMHMLNSDFLPASLKVNPQDTASKPNHLVGSQGYSVGG
DPRGHRPNAEGLSEAPGTHILALNRSWQPGESKAVLMEPDEQPIPHCIRLLGLP

>gi568815583r:66448493_66665365|GENSCAN_predicted_CDS_10|345_bp
atgaagaagaaggagaagaaggagaaaattatccagagtcctgataaactacagatcctc
caagaagagatgcacatgctgaacagtgacttcttgcctgcctccttaaaggtcaacccc
caagatacagcatccaaacccaatcacctggtgggcagccagggctatagcgtgggagga
gaccccaggggccacagacccaatgctgaaggactctcagaagcaccaggaacacacatc
cttgccctcaacagatcctggcaacctggtgaatccaaagccgtccttatggaaccagat
gaacaacctataccccactgtatccgtctgcttgggctgccataa