GENSCAN 1.0	Date run:  8-Nov-116	Time: 09:28:41

Sequence gi568815596f:30134404_30357618 : 223215 bp : 45.71% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +  13434  13562  129  2  0   24   88    91 0.527   3.59
 1.02 Intr +  22225  22389  165  0  0   98   96    34 0.782   5.36
 1.03 Term +  24216  24440  225  2  0   89   49   247 0.980  17.68
 1.04 PlyA +  25131  25136    6                               1.05

 2.00 Prom +  28545  28584   40                              -2.26
 2.01 Init +  31423  31484   62  0  2   66   61    28 0.051  -1.38
 2.02 Intr +  35175  35273   99  0  0   83   56    65 0.138   2.03
 2.03 Intr +  43680  43758   79  0  1   92   54    82 0.003   4.75
 2.04 Intr +  59304  59440  137  2  2   46   62    73 0.249  -0.13
 2.05 Intr +  66131  66261  131  2  2   87   32   108 0.061   5.44
 2.06 Intr +  67656  67737   82  1  1   25   89    35 0.028  -4.00
 2.07 Intr +  72488  72709  222  2  0   95   70   100 0.409   6.14
 2.08 Term +  75579  75789  211  0  1   86   54   111 0.573   4.27
 2.09 PlyA +  76924  76929    6                               1.05

 3.04 PlyA -  77353  77348    6                               1.05
 3.03 Term -  86143  86004  140  2  2   81   48    73 0.320   0.73
 3.02 Intr -  91947  91797  151  0  1   85   87   102 0.223   9.54
 3.01 Init -  97025  96807  219  2  0   61   64   198 0.907  11.61
 3.00 Prom -  97353  97314   40                              -7.36

 4.00 Prom +  97867  97906   40                             -10.94
 4.01 Init + 100027 100104   78  0  0   98  109   115 0.805  15.66
 4.02 Term + 123030 123218  189  2  0   87   40   261 0.685  18.65
 4.03 PlyA + 123643 123648    6                              -0.45

 5.02 PlyA - 124335 124330    6                              -3.44
 5.01 Sngl - 125076 124747  330  0  0   51   42   221 0.823   9.82
 5.00 Prom - 125746 125707   40                              -4.66

 6.06 PlyA - 126279 126274    6                               1.05
 6.05 Term - 128282 128154  129  2  0   97   43    47 0.107  -0.72
 6.04 Intr - 135649 135556   94  0  1   82   62    37 0.050   0.47
 6.03 Intr - 149790 149638  153  2  0   45   80    80 0.003   2.09
 6.02 Intr - 163475 163336  140  2  2   96   40    61 0.130   1.36
 6.01 Init - 169580 169443  138  2  0   90   14   118 0.687   4.76
 6.00 Prom - 171438 171399   40                              -6.76

 7.00 Prom + 172426 172465   40                              -2.66
 7.01 Init + 176984 177068   85  1  1   64   68    74 0.742   2.50
 7.02 Term + 180296 180357   62  0  2   83   43   102 0.712   3.17
 7.03 PlyA + 180939 180944    6                               1.05

 8.00 Prom + 181685 181724   40                              -5.76
 8.01 Init + 182906 183030  125  1  2   63   75    71 0.623   2.94
 8.02 Intr + 186103 186204  102  1  0   47   83    78 0.733   2.49
 8.03 Intr + 193921 193990   70  1  1   98   87    86 0.786   8.68
 8.04 Intr + 194627 194696   70  1  1   41   80    51 0.487  -1.65
 8.05 Term + 195428 195444   17  0  2   98   54    19 0.398  -2.10
 8.06 PlyA + 196283 196288    6                               1.05

 9.07 PlyA - 198103 198098    6                               1.05
 9.06 Term - 198713 198583  131  0  2   98   50    67 0.618   2.24
 9.05 Intr - 199610 199531   80  1  2   46  110    33 0.429   0.49
 9.04 Intr - 200169 200089   81  2  0   82   67    71 0.376   3.15
 9.03 Intr - 205265 205112  154  0  1   59  100    89 0.183   6.33
 9.02 Intr - 209743 209713   31  1  1   76   95    19 0.214  -0.90
 9.01 Intr - 215683 215583  101  2  2   63   93    67 0.330   4.53

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term +  60750  60861  112  0  1   92   54   139 0.824   8.93
S.002 Intr - 103635 103516  120  0  0   24   93   132 0.873   7.99


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815596f:30134404_30357618|GENSCAN_predicted_peptide_1|172_aa
GGPAATAAAALCRPGPSRLAGWRHVASISWAGGGARGPHCGCRVFRTSAIKMGRIFLDHI
GGTRLFSCANCDTILTNRSELISTRFTGATGRAFLFNKVVNLQYSEVQDRVMLTGRHMVR
DVSCKNCNSKLGWIYEFATEDSQRYKEGRVILERALVRESEGFEEHVPSDNS

>gi568815596f:30134404_30357618|GENSCAN_predicted_CDS_1|519_bp
ggaggccccgccgccaccgccgccgccgcgctctgccgccccggtccctcccgattggcc
ggctggcgtcacgtggcctccatcagctgggccggcgggggcgctcgcgggccccactgc
ggctgccgggtttttagaacttcagccataaaaatgggcagaattttccttgatcatatc
ggtggtacccgtctgttttcttgtgcaaactgtgatacgatcctgaccaaccgctcagaa
ctcatctccactcgtttcacaggcgccactggcagagcatttctttttaacaaggtagtt
aacctgcagtacagtgaagttcaagatcgggtcatgctcactggccgccacatggttcga
gatgtgagctgcaaaaactgcaatagcaaactgggatggatctatgagtttgccactgaa
gacagccagcgatataaggaaggccgcgtgatcctggaacgtgctctagttcgagagagt
gagggctttgaggagcatgtaccatctgataactcttga

>gi568815596f:30134404_30357618|GENSCAN_predicted_peptide_2|340_aa
MKDICKASKITECIPAAGNERLVTQKGKGMGKNMRAGVRGGFKLSTGFPAPPTCKQSFLN
ICKEATSNHKHFQEDTVHGRGWHKQLSQNLPPPPMQLPSHPSVEAVIPWGSPGLSGLDGS
WQAMGSDASDLQDSLVPHRAAQAGPGFGEAEDSTRPIRAVDSAAVSRSQVLPHGTSLKEK
TLHGERPQIILAEAPDKGYRTWIKQEHNECRAEPQLSDLSSGENGQGREQLRDGAFQAGR
FLNVGMQNLALKWQRLNCEMIFSSSSTKSVSFIALAKPLGLSRRGAFRPATVAMHKLGHF
QKFTELQIRKLSFQSLVRETAQNFKTDRASRTQLLVFCGK

>gi568815596f:30134404_30357618|GENSCAN_predicted_CDS_2|1023_bp
atgaaggatatttgcaaagccagtaaaattactgaatgcattcctgctgcaggaaatgaa
agactagtgacccagaaaggcaagggcatggggaagaatatgcgagctggagtcagagga
ggcttcaagctctccactgggtttcctgctcccccaacctgcaagcagtcctttctgaac
atctgcaaggaggcaacatcaaaccacaagcacttccaggaagacacagtccatggcagg
ggctggcacaagcaactcagccagaacctccctccacccccgatgcagctaccaagtcat
cccagtgtggaagctgtcatcccttgggggtcacctggcctctctggcttggatggcagc
tggcaggccatgggaagtgatgcaagtgacctgcaggattcactggtgccccacagagct
gcacaagctggcccaggatttggagaagcagaagattcgacaagaccaataagggctgtg
gactcagctgctgtttcacgctcacaagttttgccacatgggacaagcctaaaagaaaag
acactacatggagagaggccccagatcatcctggctgaggccccagacaaagggtacaga
acgtggattaaacaggaacacaatgagtgcagggcagaacctcagctctcagatttgagc
tctggagagaatgggcagggccgtgagcagctgagagatggagccttccaggctgggcga
tttcttaatgtaggaatgcaaaacctggccctcaagtggcaaaggctaaattgtgaaatg
attttcagcagctcctccaccaaaagtgtcagttttattgctttggccaaacctctagga
ctatcccggaggggtgctttcaggcctgccactgtggcaatgcacaaacttggacatttt
cagaagttcactgagcttcagattcgcaaactctccttccagagtctggtgcgagaaact
gctcagaacttcaaaacagatcgtgcttccagaacacagctattggtgttttgcgggaag
tga

>gi568815596f:30134404_30357618|GENSCAN_predicted_peptide_3|169_aa
MNGFSARSSGGRRLGGALGSAPGAVVRCGCEPGPLPPLSHAHTRSLAPARTPRPRRFPLT
APSTHTPNSSAAEEVSSWVLATQRMNEARECEPPILVISELAVNNTKQPEPTRQNPPAFD
LLCYPNASSPASLPLFSLPCTEELCSHENPQEKDRSDASSSAPLRRRQN

>gi568815596f:30134404_30357618|GENSCAN_predicted_CDS_3|510_bp
atgaatggcttcagcgctcgcagctccggcgggcggcggctcgggggcgcgctcggctct
gctcccggggccgtggttcgctgcggctgcgagcccggccccctcccgccgctctcccac
gcgcacacgcgctcactcgcaccggcccggactccgcgtccgcgccgcttcccgctcaca
gccccctccacgcacaccccgaactccagcgcggcggaggaagtgtccagctgggtactg
gccacgcagagaatgaatgaggcccgagaatgtgaacctcctatcttggtcatcagtgaa
ttagcagtcaacaacacaaagcaacccgaacccaccagacaaaatcctccagcctttgac
ttactttgctaccccaacgcttccagccctgcttcattgcctctcttcagcttgccatgc
actgaagagctctgcagccatgagaatcctcaggaaaaggacagatccgatgctagctcg
tctgctccacttcgcaggcgacagaactaa

>gi568815596f:30134404_30357618|GENSCAN_predicted_peptide_4|88_aa
MTEVMMNTQPMEEIGLSPRKDGLSYQIFPDPSDFDRCCKLKDRLPSIVVEPTEGEVESGE
LRWPPEEFLVQEDEQDNCEETAKENKEQ

>gi568815596f:30134404_30357618|GENSCAN_predicted_CDS_4|267_bp
atgactgaggtgatgatgaacacccagcccatggaggagatcggcctcagcccccgcaag
gatggcctttcctaccagatcttcccagacccgtcagattttgaccgctgctgcaaactg
aaggaccgtctgccctccatagtggtggaacccacagaaggggaggtggagagcggggag
ctccggtggccccctgaggagttcctggtccaggaggatgagcaagataactgcgaagag
acagcgaaagaaaataaagagcagtag

>gi568815596f:30134404_30357618|GENSCAN_predicted_peptide_5|109_aa
MDEPLSAAKTERSGEQERGKPLSVQAAGLSHFCEELEEVIAIDVCHTGRQQREEARGAGD
HWLPRTEFRGLLCPQRTLVLLPRHPQSHNDLEVLNTAIYTRPELRVNLD

>gi568815596f:30134404_30357618|GENSCAN_predicted_CDS_5|330_bp
atggatgaaccactctctgcagccaaaacagaacgaagcggggagcaagagagaggaaag
cccctctcggtgcaggctgccggcctctcccacttctgcgaggagttggaagaagttatt
gccattgatgtgtgtcacacaggcagacaacagagggaggaagcaaggggtgccggcgac
cattggcttcccagaacggaattccgcggactgctgtgtccacagcgcaccctcgtcctc
ctgccccggcatccccagagccacaatgaccttgaggtattaaatacagctatatacaca
cgtccagaactgagggtcaacctggactga

>gi568815596f:30134404_30357618|GENSCAN_predicted_peptide_6|217_aa
MGERALALRVWSRTTKMCFQTLSRAGCEVRTNPLTLLGFGLFICKMEAATSHCSFPVTRG
LGCVACMEVNAWALERCTKQQGRWVAAALPWVCLATHAEPKSTSLELSAMAASDFCVKEG
HHDCEGASLALAGECMSRVRAMGSPNILFPLPFLAQFCSVILLKWNHLQLPWDALVMKKR
RQTEGVESCLHFEATFVSGVHKGPKAKSSREKAELVP

>gi568815596f:30134404_30357618|GENSCAN_predicted_CDS_6|654_bp
atgggggagagagctctggcgctcagggtctggagcaggaccaccaagatgtgcttccag
actttgtcacgtgccggctgtgaggttcgcacaaaccccttgacccttctgggctttggg
ctcttcatctgcaaaatggaagctgccacctcccactgcagcttcccagtcacccggggc
ctgggctgcgtggcctgtatggaggtcaatgcttgggccctggaacgctgcaccaagcag
caggggagatgggtagcagcagccttgccctgggtctgcttagccacacacgcagagcca
aaatcgacctccctggaactttctgccatggctgccagcgacttttgtgtcaaggagggc
caccatgattgtgagggagcttccctggcccttgctggggagtgcatgagtagagtcaga
gccatggggagcccaaacatcctgtttcccctgccttttctggcccaattctgctccgtg
atcctgctgaagtggaatcatttgcagcttccgtgggatgcactcgtgatgaagaaaagg
aggcagacagaaggagttgaatcttgtcttcactttgaagctacctttgtatctggtgtc
cacaaaggacccaaagcaaaaagcagcagagagaaggcagagttagttccttag

>gi568815596f:30134404_30357618|GENSCAN_predicted_peptide_7|48_aa
MIVTQGGPSLAQPMQACLLAFTGFLEASDSDFIDLGGYLGSNIDLKAA

>gi568815596f:30134404_30357618|GENSCAN_predicted_CDS_7|147_bp
atgattgtcacccagggtggcccctctctggcccagcccatgcaggcctgcttgcttgct
ttcactgggttcctggaagcctctgattctgatttcattgacctgggcggctacctgggc
agcaatattgacttaaaagctgcctag

>gi568815596f:30134404_30357618|GENSCAN_predicted_peptide_8|127_aa
MKGHTTCPATDPVMVFHNKPCPSHELMEQIFRAHRTGKAEARCEQEFSEKEFGGKRLHSS
EQVANLRDAAAHVRPSPFIVKHPWKVHETPGFGQDNGAIPRSAYMLHKRQQPIADWVNLE
ISAPSYE

>gi568815596f:30134404_30357618|GENSCAN_predicted_CDS_8|384_bp
atgaaaggccacaccacatgtcctgccactgatcctgtcatggtcttccataacaagccc
tgccccagccatgaacttatggagcagatattcagagcccacagaacaggaaaagcagag
gcgaggtgtgaacaagagttctctgaaaaggaatttggaggaaagagacttcattccagt
gaacaggtggcaaacctgagagatgcagcagcccatgtaagaccaagccctttcatcgtc
aaacacccatggaaggtccatgaaacgccagggtttgggcaggacaatggggccattcca
agaagcgcttacatgctccacaaacggcagcaaccaatcgcagactgggtcaaccttgaa
atttcagctccctcttatgagtga

>gi568815596f:30134404_30357618|GENSCAN_predicted_peptide_9|192_aa
XSVESQGLGGRRHNVCFQEWTAKLLGLPALADSPVVTVAQSSSACPFGKPPEKSEMPKFR
WLDMGSGATEAPDREGAMEGLMKPGPHLWGSVSNERCKASHQQHYWHLARAIFAVFDGAI
PLREATQRLLALSKVIVGGGGAEVGVLGQGNGQCKTLNEGRSLEETVIGTMTASSVGAAK
RTDQDVNLVVFL

>gi568815596f:30134404_30357618|GENSCAN_predicted_CDS_9|579_bp
ntgagtgttgagagccaggggcttggtggacgaagacacaatgtctgcttccaggaatgg
acggccaagcttctgggtttaccggctcttgcagattctccggttgtaactgtggctcag
agctcatcagcctgcccttttggaaagccaccagagaagtcagagatgcctaagttcaga
tggttggacatgggctctggagccactgaggcccctgacagggaaggcgccatggaaggc
ttgatgaagcctggccctcatctgtggggctcagtcagcaatgaaaggtgcaaggcttcc
catcagcagcactactggcatttggcaagggctatctttgctgtgtttgacggtgctata
cctctcagagaggccacacaaagactcttggctctatccaaggttattgttggtggcggt
ggtgctgaagttggggttttggggcagggaaatggccaatgtaaaaccctaaatgagggc
cggagtctagaagaaactgtaataggaacaatgacagcatcctctgtaggagctgcaaag
agaacagaccaggatgtgaacctggttgttttcctgtga