Result of FASTA (ccds) for pF1KE0048
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0048, 522 aa
  1>>>pF1KE0048 522 - 522 aa - 522 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.9580+/-0.000884; mu= 8.2283+/- 0.054
 mean_var=176.2150+/-34.948, 0's: 0 Z-trim(112.8): 32  B-trim: 0 in 0/53
 Lambda= 0.096617
 statistics sampled from 13443 (13468) to 13443 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.748), E-opt: 0.2 (0.414), width:  16
 Scan time:  3.730

The best scores are:                                      opt bits E(32554)
CCDS3738.1 LARP1B gene_id:55132|Hs108|chr4         ( 914) 3449 493.0  6e-139
CCDS64057.1 LARP1B gene_id:55132|Hs108|chr4        ( 335) 2253 326.0 4.3e-89
CCDS47133.1 LARP1B gene_id:55132|Hs108|chr4        ( 358) 2253 326.0 4.5e-89
CCDS4328.1 LARP1 gene_id:23367|Hs108|chr5          (1019) 1560 229.7 1.2e-59


>>CCDS3738.1 LARP1B gene_id:55132|Hs108|chr4              (914 aa)
 initn: 3449 init1: 3449 opt: 3449  Z-score: 2608.0  bits: 493.0 E(32554): 6e-139
Smith-Waterman score: 3449; 100.0% identity (100.0% similar) in 508 aa overlap (1-508:1-508)

               10        20        30        40        50        60
pF1KE0 MENWPTPSELVNTGFQSVLSQGNKKPQNRKEKEEKVEKRSNSDSKENRETKLNGPGENVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 MENWPTPSELVNTGFQSVLSQGNKKPQNRKEKEEKVEKRSNSDSKENRETKLNGPGENVS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 EDEAQSSNQRKRANKHKWVPLHLDVVRSESQERPGSRNSSRCQPEANKPTHNNRRNDTRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 EDEAQSSNQRKRANKHKWVPLHLDVVRSESQERPGSRNSSRCQPEANKPTHNNRRNDTRS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 WKRDREKRDDQDDVSSVRSEGGNIRGSFRGRGRGRGRGRGRGRGNPRLNFDYSYGYQEHG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 WKRDREKRDDQDDVSSVRSEGGNIRGSFRGRGRGRGRGRGRGRGNPRLNFDYSYGYQEHG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 ERTDQPFQTELNTSMMYYYDDGTGVQVYPVEEALLKEYIKRQIEYYFSVENLERDFFLRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 ERTDQPFQTELNTSMMYYYDDGTGVQVYPVEEALLKEYIKRQIEYYFSVENLERDFFLRG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 KMDEQGFLPISLIAGFQRVQALTTNLNLILEALKDSTEVEIVDEKMRKKIEPEKWPIPGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 KMDEQGFLPISLIAGFQRVQALTTNLNLILEALKDSTEVEIVDEKMRKKIEPEKWPIPGP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 PPRSVPPTDFSQLIDCPEFVPGQAFCSHTESAPNSPRIGSPLSPKKNSETSILQAMSRGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 PPRSVPPTDFSQLIDCPEFVPGQAFCSHTESAPNSPRIGSPLSPKKNSETSILQAMSRGL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 STSLPDLDSEPWIEVKKRHQPAPVKLRESVSVPEGSLNQLCSSEEPEQEELDFLFDEEIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 STSLPDLDSEPWIEVKKRHQPAPVKLRESVSVPEGSLNQLCSSEEPEQEELDFLFDEEIE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE0 QIGRKNTFTDWSDNDSDYEIDDQDLNKILIVTQTPPYVKKHPGGDRTGTHMSRAKITSEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 QIGRKNTFTDWSDNDSDYEIDDQDLNKILIVTQTPPYVKKHPGGDRTGTHMSRAKITSEL
              430       440       450       460       470       480

              490       500       510       520                    
pF1KE0 AKVINDGLYYYEQDLWMEEDENKHTAIKVIVSGQHLSTDALF                  
       ::::::::::::::::::::::::::::                                
CCDS37 AKVINDGLYYYEQDLWMEEDENKHTAIKQEVENFKKLNLISKEQFENLTPELPFEPNQEV
              490       500       510       520       530       540

>>CCDS64057.1 LARP1B gene_id:55132|Hs108|chr4             (335 aa)
 initn: 2253 init1: 2253 opt: 2253  Z-score: 1713.1  bits: 326.0 E(32554): 4.3e-89
Smith-Waterman score: 2253; 100.0% identity (100.0% similar) in 329 aa overlap (1-329:1-329)

               10        20        30        40        50        60
pF1KE0 MENWPTPSELVNTGFQSVLSQGNKKPQNRKEKEEKVEKRSNSDSKENRETKLNGPGENVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 MENWPTPSELVNTGFQSVLSQGNKKPQNRKEKEEKVEKRSNSDSKENRETKLNGPGENVS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 EDEAQSSNQRKRANKHKWVPLHLDVVRSESQERPGSRNSSRCQPEANKPTHNNRRNDTRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 EDEAQSSNQRKRANKHKWVPLHLDVVRSESQERPGSRNSSRCQPEANKPTHNNRRNDTRS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 WKRDREKRDDQDDVSSVRSEGGNIRGSFRGRGRGRGRGRGRGRGNPRLNFDYSYGYQEHG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 WKRDREKRDDQDDVSSVRSEGGNIRGSFRGRGRGRGRGRGRGRGNPRLNFDYSYGYQEHG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 ERTDQPFQTELNTSMMYYYDDGTGVQVYPVEEALLKEYIKRQIEYYFSVENLERDFFLRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 ERTDQPFQTELNTSMMYYYDDGTGVQVYPVEEALLKEYIKRQIEYYFSVENLERDFFLRG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 KMDEQGFLPISLIAGFQRVQALTTNLNLILEALKDSTEVEIVDEKMRKKIEPEKWPIPGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 KMDEQGFLPISLIAGFQRVQALTTNLNLILEALKDSTEVEIVDEKMRKKIEPEKWPIPGP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 PPRSVPPTDFSQLIDCPEFVPGQAFCSHTESAPNSPRIGSPLSPKKNSETSILQAMSRGL
       :::::::::::::::::::::::::::::                               
CCDS64 PPRSVPPTDFSQLIDCPEFVPGQAFCSHTVRVMIF                         
              310       320       330                              

>>CCDS47133.1 LARP1B gene_id:55132|Hs108|chr4             (358 aa)
 initn: 2253 init1: 2253 opt: 2253  Z-score: 1712.7  bits: 326.0 E(32554): 4.5e-89
Smith-Waterman score: 2253; 100.0% identity (100.0% similar) in 329 aa overlap (1-329:1-329)

               10        20        30        40        50        60
pF1KE0 MENWPTPSELVNTGFQSVLSQGNKKPQNRKEKEEKVEKRSNSDSKENRETKLNGPGENVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MENWPTPSELVNTGFQSVLSQGNKKPQNRKEKEEKVEKRSNSDSKENRETKLNGPGENVS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 EDEAQSSNQRKRANKHKWVPLHLDVVRSESQERPGSRNSSRCQPEANKPTHNNRRNDTRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 EDEAQSSNQRKRANKHKWVPLHLDVVRSESQERPGSRNSSRCQPEANKPTHNNRRNDTRS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 WKRDREKRDDQDDVSSVRSEGGNIRGSFRGRGRGRGRGRGRGRGNPRLNFDYSYGYQEHG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 WKRDREKRDDQDDVSSVRSEGGNIRGSFRGRGRGRGRGRGRGRGNPRLNFDYSYGYQEHG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 ERTDQPFQTELNTSMMYYYDDGTGVQVYPVEEALLKEYIKRQIEYYFSVENLERDFFLRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 ERTDQPFQTELNTSMMYYYDDGTGVQVYPVEEALLKEYIKRQIEYYFSVENLERDFFLRG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 KMDEQGFLPISLIAGFQRVQALTTNLNLILEALKDSTEVEIVDEKMRKKIEPEKWPIPGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 KMDEQGFLPISLIAGFQRVQALTTNLNLILEALKDSTEVEIVDEKMRKKIEPEKWPIPGP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 PPRSVPPTDFSQLIDCPEFVPGQAFCSHTESAPNSPRIGSPLSPKKNSETSILQAMSRGL
       :::::::::::::::::::::::::::::                               
CCDS47 PPRSVPPTDFSQLIDCPEFVPGQAFCSHTGNIFSSRANDVTVGYLVQFTYLFIYFQFI  
              310       320       330       340       350          

>>CCDS4328.1 LARP1 gene_id:23367|Hs108|chr5               (1019 aa)
 initn: 1368 init1: 484 opt: 1560  Z-score: 1184.3  bits: 229.7 E(32554): 1.2e-59
Smith-Waterman score: 1739; 52.6% identity (76.8% similar) in 534 aa overlap (3-508:98-626)

                                           10          20        30
pF1KE0                             MENWPTPSELVNTGFQ--SVLSQGNKKPQNRK
                                     :::::.:... . :  :   : ..:   .:
CCDS43 PEHSAPAKVVRAAVPKQRKGSKVGDFGDAINWPTPGEIAHKSVQPQSHKPQPTRKLPPKK
        70        80        90       100       110       120       

               40        50        60         70        80         
pF1KE0 EKEEKVEKRSNSDSKENRETKLNGPGENVSEDE-AQSSNQRKRANKHKWVPLHLDVVRSE
       . .:. ::  .:::::. .:: .  ::. . ::  : ..:.:..::::::::..:.    
CCDS43 DMKEQ-EKGEGSDSKESPKTKSDESGEEKNGDEDCQRGGQKKKGNKHKWVPLQIDMKPEV
       130        140       150       160       170       180      

      90       100          110               120          130     
pF1KE0 SQERPGSRNSSRCQPE---ANKPTHNNRRNDTR--------SWK---RDREKRDDQDDVS
        .:. .:: .   .:.   ::.   .. .. :         .:.   . .    :::..:
CCDS43 PREKLASRPTRPPEPRHIPANRGEIKGSESATYVPVAPPTPAWQPEIKPEPAWHDQDETS
        190       200       210       220       230       240      

         140        150       160       170       180       190    
pF1KE0 SVRSEG-GNIRGSFRGRGRGRGRGRGRGRGNPRLNFDYSYGYQEHGERTDQPFQTELNTS
       ::.:.: :. :.::::::::::::::::::. : .:::..::..  . .. :   .  ..
CCDS43 SVKSDGAGGARASFRGRGRGRGRGRGRGRGGTRTHFDYQFGYRKF-DGVEGPRTPKYMNN
        250       260       270       280       290        300     

          200       210       220       230       240       250    
pF1KE0 MMYYYDDGTGVQVYPVEEALLKEYIKRQIEYYFSVENLERDFFLRGKMDEQGFLPISLIA
       . ::.:. .....: :.. :::.::::::::::::.::::::::: ::: .:::::.:::
CCDS43 ITYYFDNVSSTELYSVDQELLKDYIKRQIEYYFSVDNLERDFFLRRKMDADGFLPITLIA
         310       320       330       340       350       360     

          260       270       280       290       300       310    
pF1KE0 GFQRVQALTTNLNLILEALKDSTEVEIVDEKMRKKIEPEKWPIPGPPPRSVPPTDFSQLI
       .:.:::::::...::. :::::  :::::::.:.. ::::::.:  :  .   ::::::.
CCDS43 SFHRVQALTTDISLIFAALKDSKVVEIVDEKVRRREEPEKWPLP--PIVDYSQTDFSQLL
         370       380       390       400         410       420   

          320       330       340       350       360       370    
pF1KE0 DCPEFVPGQAFCSHTESAPNSPRIGSPLSPKKNSETSILQAMSRGLSTSLPDLDSEPWIE
       .:::::: : . ..:::::.:::  .:. : :. :.: :... .:::.:::::::: :::
CCDS43 NCPEFVPRQHYQKETESAPGSPRAVTPV-PTKTEEVSNLKTLPKGLSASLPDLDSENWIE
           430       440       450        460       470       480  

          380               390        400       410       420     
pF1KE0 VKKRHQPAPVKLRES--------VSVPEG-SLNQLCSSEEPEQEELDFLFDEEIEQI-GR
       :::: .:.:.. ..:        .:.:.    .:: :... ::::::::::::.::. ::
CCDS43 VKKRPRPSPARPKKSEESRFSHLTSLPQQLPSQQLMSKDQDEQEELDFLFDEEMEQMDGR
            490       500       510       520       530       540  

          430       440       450       460       470       480    
pF1KE0 KNTFTDWSDNDSDYEIDDQDLNKILIVTQTPPYVKKHPGGDRTGTHMSRAKITSELAKVI
       ::::: :::..:::::::.:.:::::::::: :...::::::::.: ::::...::::::
CCDS43 KNTFTAWSDEESDYEIDDRDVNKILIVTQTPHYMRRHPGGDRTGNHTSRAKMSAELAKVI
            550       560       570       580       590       600  

          490       500       510       520                        
pF1KE0 NDGLYYYEQDLWMEEDENKHTAIKVIVSGQHLSTDALF                      
       ::::.::::::: :. : ... ::                                    
CCDS43 NDGLFYYEQDLWAEKFEPEYSQIKQEVENFKKVNMISREQFDTLTPEPPVDPNQEVPPGP
            610       620       630       640       650       660  




522 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 06:08:00 2016 done: Fri Nov  4 06:08:01 2016
 Total Scan time:  3.730 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]
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