Result of FASTA (ccds) for pF1KA0460
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0460, 1424 aa
  1>>>pF1KA0460 1424 - 1424 aa - 1424 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 12.8773+/-0.00119; mu= -8.0520+/- 0.072
 mean_var=546.8863+/-113.550, 0's: 0 Z-trim(115.1): 58  B-trim: 176 in 1/53
 Lambda= 0.054844
 statistics sampled from 15609 (15643) to 15609 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.753), E-opt: 0.2 (0.481), width:  16
 Scan time:  7.190

The best scores are:                                      opt bits E(32554)
CCDS44216.1 RPRD2 gene_id:23248|Hs108|chr1         (1461) 9503 768.0       0
CCDS72907.1 RPRD2 gene_id:23248|Hs108|chr1         (1435) 8620 698.1 4.7e-200


>>CCDS44216.1 RPRD2 gene_id:23248|Hs108|chr1              (1461 aa)
 initn: 9503 init1: 9503 opt: 9503  Z-score: 4082.6  bits: 768.0 E(32554):    0
Smith-Waterman score: 9503; 100.0% identity (100.0% similar) in 1424 aa overlap (1-1424:38-1461)

                                             10        20        30
pF1KA0                               MESIQGLSSWCIENKKHHSTIVYHWMKWLR
                                     ::::::::::::::::::::::::::::::
CCDS44 GSSKASSSSASSAGALESSLDRKFQSVTNTMESIQGLSSWCIENKKHHSTIVYHWMKWLR
        10        20        30        40        50        60       

               40        50        60        70        80        90
pF1KA0 RSAYPHRLNLFYLANDVIQNCKRKNAIIFRESFADVLPEAAALVKDPSVSKSVERIFKIW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 RSAYPHRLNLFYLANDVIQNCKRKNAIIFRESFADVLPEAAALVKDPSVSKSVERIFKIW
        70        80        90       100       110       120       

              100       110       120       130       140       150
pF1KA0 EDRNVYPEEMIVALREALSTTFKTQKQLKENLNKQPNKQWKKSQTSTNPKAALKSKIVAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 EDRNVYPEEMIVALREALSTTFKTQKQLKENLNKQPNKQWKKSQTSTNPKAALKSKIVAE
       130       140       150       160       170       180       

              160       170       180       190       200       210
pF1KA0 FRSQALIEELLLYKRSEDQIELKEKQLSTMRVDVCSTETLKCLKDKTGGKKFSKEFEEAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 FRSQALIEELLLYKRSEDQIELKEKQLSTMRVDVCSTETLKCLKDKTGGKKFSKEFEEAS
       190       200       210       220       230       240       

              220       230       240       250       260       270
pF1KA0 SKLEEFVNGLDKQVKNGPSLTEALENAGIFYEAQYKEVKVVANAYKTFANRVNNLKKKLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 SKLEEFVNGLDKQVKNGPSLTEALENAGIFYEAQYKEVKVVANAYKTFANRVNNLKKKLD
       250       260       270       280       290       300       

              280       290       300       310       320       330
pF1KA0 QLKSTLPDPEESPVPSPSMDAPSPTGSESPFQGMGGEESQSPTMESEKSATPEPVTDNRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 QLKSTLPDPEESPVPSPSMDAPSPTGSESPFQGMGGEESQSPTMESEKSATPEPVTDNRD
       310       320       330       340       350       360       

              340       350       360       370       380       390
pF1KA0 VEDMELSDVEDDGSKIIVEDRKEKPAEKSAVSTSVPTKPTENISKASSCTPVPVTMTATP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 VEDMELSDVEDDGSKIIVEDRKEKPAEKSAVSTSVPTKPTENISKASSCTPVPVTMTATP
       370       380       390       400       410       420       

              400       410       420       430       440       450
pF1KA0 PLPKPVNTSLSPSPALALPNLANVDLAKISSILSSLTSVMKNTGVSPASRPSPGTPTSPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 PLPKPVNTSLSPSPALALPNLANVDLAKISSILSSLTSVMKNTGVSPASRPSPGTPTSPS
       430       440       450       460       470       480       

              460       470       480       490       500       510
pF1KA0 NLTSGLKTPAPATTTSHNPLANILSKVEITPESILSALSKTQTQSAPALQGLSSLLQSVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 NLTSGLKTPAPATTTSHNPLANILSKVEITPESILSALSKTQTQSAPALQGLSSLLQSVT
       490       500       510       520       530       540       

              520       530       540       550       560       570
pF1KA0 GNPVPASEAASQSTSASPANTTVSTIKGRNLPSSAQPFIPKSFNYSPNSSTSEVSSTSAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 GNPVPASEAASQSTSASPANTTVSTIKGRNLPSSAQPFIPKSFNYSPNSSTSEVSSTSAS
       550       560       570       580       590       600       

              580       590       600       610       620       630
pF1KA0 KASIGQSPGLPSTTFKLPSNSLGFTATHNTSPAAPPTEVTICQSSEVSKPKLESESTSPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 KASIGQSPGLPSTTFKLPSNSLGFTATHNTSPAAPPTEVTICQSSEVSKPKLESESTSPS
       610       620       630       640       650       660       

              640       650       660       670       680       690
pF1KA0 LEMKIHNFLKGNPGFSGLNLNIPILSSLGSSAPSESHPSDFQRGPTSTSIDNIDGTPVRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LEMKIHNFLKGNPGFSGLNLNIPILSSLGSSAPSESHPSDFQRGPTSTSIDNIDGTPVRD
       670       680       690       700       710       720       

              700       710       720       730       740       750
pF1KA0 ERSGTPTQDEMMDKPTSSSVDTMSLLSKIISPGSSTPSSTRSPPPGRDESYPRELSNSVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 ERSGTPTQDEMMDKPTSSSVDTMSLLSKIISPGSSTPSSTRSPPPGRDESYPRELSNSVS
       730       740       750       760       770       780       

              760       770       780       790       800       810
pF1KA0 TYRPFGLGSESPYKQPSDGMERPSSLMDSSQEKFYPDTSFQEDEDYRDFEYSGPPPSAMM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 TYRPFGLGSESPYKQPSDGMERPSSLMDSSQEKFYPDTSFQEDEDYRDFEYSGPPPSAMM
       790       800       810       820       830       840       

              820       830       840       850       860       870
pF1KA0 NLEKKPAKSILKSSKLSDTTEYQPILSSYSHRAQEFGVKSAFPPSVRALLDSSENCDRLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 NLEKKPAKSILKSSKLSDTTEYQPILSSYSHRAQEFGVKSAFPPSVRALLDSSENCDRLS
       850       860       870       880       890       900       

              880       890       900       910       920       930
pF1KA0 SSPGLFGAFSVRGNEPGSDRSPSPSKNDSFFTPDSNHNSLSQSTTGHLSLPQKQYPDSPH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 SSPGLFGAFSVRGNEPGSDRSPSPSKNDSFFTPDSNHNSLSQSTTGHLSLPQKQYPDSPH
       910       920       930       940       950       960       

              940       950       960       970       980       990
pF1KA0 PVPHRSLFSPQNTLAAPTGHPPTSGVEKVLASTISTTSTIEFKNMLKNASRKPSDDKHFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 PVPHRSLFSPQNTLAAPTGHPPTSGVEKVLASTISTTSTIEFKNMLKNASRKPSDDKHFG
       970       980       990      1000      1010      1020       

             1000      1010      1020      1030      1040      1050
pF1KA0 QAPSKGTPSDGVSLSNLTQPSLTATDQQQQEEHYRIETRVSSSCLDLPDSTEEKGAPIET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 QAPSKGTPSDGVSLSNLTQPSLTATDQQQQEEHYRIETRVSSSCLDLPDSTEEKGAPIET
      1030      1040      1050      1060      1070      1080       

             1060      1070      1080      1090      1100      1110
pF1KA0 LGYHSASNRRMSGEPIQTVESIRVPGKGNRGHGREASRVGWFDLSTSGSSFDNGPSSASE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LGYHSASNRRMSGEPIQTVESIRVPGKGNRGHGREASRVGWFDLSTSGSSFDNGPSSASE
      1090      1100      1110      1120      1130      1140       

             1120      1130      1140      1150      1160      1170
pF1KA0 LASLGGGGSGGLTGFKTAPYKERAPQFQESVGSFRSNSFNSTFEHHLPPSPLEHGTPFQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LASLGGGGSGGLTGFKTAPYKERAPQFQESVGSFRSNSFNSTFEHHLPPSPLEHGTPFQR
      1150      1160      1170      1180      1190      1200       

             1180      1190      1200      1210      1220      1230
pF1KA0 EPVGPSSAPPVPPKDHGGIFSRDAPTHLPSVDLSNPFTKEAALAHAAPPPPPGEHSGIPF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 EPVGPSSAPPVPPKDHGGIFSRDAPTHLPSVDLSNPFTKEAALAHAAPPPPPGEHSGIPF
      1210      1220      1230      1240      1250      1260       

             1240      1250      1260      1270      1280      1290
pF1KA0 PTPPPPPPPGEHSSSGGSGVPFSTPPPPPPPVDHSGVVPFPAPPLAEHGVAGAVAVFPKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 PTPPPPPPPGEHSSSGGSGVPFSTPPPPPPPVDHSGVVPFPAPPLAEHGVAGAVAVFPKD
      1270      1280      1290      1300      1310      1320       

             1300      1310      1320      1330      1340      1350
pF1KA0 HSSLLQGTLAEHFGVLPGPRDHGGPTQRDLNGPGLSRVRESLTLPSHSLEHLGPPHGGGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 HSSLLQGTLAEHFGVLPGPRDHGGPTQRDLNGPGLSRVRESLTLPSHSLEHLGPPHGGGG
      1330      1340      1350      1360      1370      1380       

             1360      1370      1380      1390      1400      1410
pF1KA0 GGGSNSSSGPPLGPSHRDTISRSGIILRSPRPDFRPREPFLSRDPFHSLKRPRPPFARGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 GGGSNSSSGPPLGPSHRDTISRSGIILRSPRPDFRPREPFLSRDPFHSLKRPRPPFARGP
      1390      1400      1410      1420      1430      1440       

             1420    
pF1KA0 PFFAPKRPFFPPRY
       ::::::::::::::
CCDS44 PFFAPKRPFFPPRY
      1450      1460 

>>CCDS72907.1 RPRD2 gene_id:23248|Hs108|chr1              (1435 aa)
 initn: 8604 init1: 8604 opt: 8620  Z-score: 3705.2  bits: 698.1 E(32554): 4.7e-200
Smith-Waterman score: 9269; 98.2% identity (98.2% similar) in 1424 aa overlap (1-1424:38-1435)

                                             10        20        30
pF1KA0                               MESIQGLSSWCIENKKHHSTIVYHWMKWLR
                                     ::::::::::::::::::::::::::::::
CCDS72 GSSKASSSSASSAGALESSLDRKFQSVTNTMESIQGLSSWCIENKKHHSTIVYHWMKWLR
        10        20        30        40        50        60       

               40        50        60        70        80        90
pF1KA0 RSAYPHRLNLFYLANDVIQNCKRKNAIIFRESFADVLPEAAALVKDPSVSKSVERIFKIW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 RSAYPHRLNLFYLANDVIQNCKRKNAIIFRESFADVLPEAAALVKDPSVSKSVERIFKIW
        70        80        90       100       110       120       

              100       110       120       130       140       150
pF1KA0 EDRNVYPEEMIVALREALSTTFKTQKQLKENLNKQPNKQWKKSQTSTNPKAALKSKIVAE
       ::::::::::::::::::                          ::::::::::::::::
CCDS72 EDRNVYPEEMIVALREAL--------------------------TSTNPKAALKSKIVAE
       130       140                                 150       160 

              160       170       180       190       200       210
pF1KA0 FRSQALIEELLLYKRSEDQIELKEKQLSTMRVDVCSTETLKCLKDKTGGKKFSKEFEEAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 FRSQALIEELLLYKRSEDQIELKEKQLSTMRVDVCSTETLKCLKDKTGGKKFSKEFEEAS
             170       180       190       200       210       220 

              220       230       240       250       260       270
pF1KA0 SKLEEFVNGLDKQVKNGPSLTEALENAGIFYEAQYKEVKVVANAYKTFANRVNNLKKKLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 SKLEEFVNGLDKQVKNGPSLTEALENAGIFYEAQYKEVKVVANAYKTFANRVNNLKKKLD
             230       240       250       260       270       280 

              280       290       300       310       320       330
pF1KA0 QLKSTLPDPEESPVPSPSMDAPSPTGSESPFQGMGGEESQSPTMESEKSATPEPVTDNRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 QLKSTLPDPEESPVPSPSMDAPSPTGSESPFQGMGGEESQSPTMESEKSATPEPVTDNRD
             290       300       310       320       330       340 

              340       350       360       370       380       390
pF1KA0 VEDMELSDVEDDGSKIIVEDRKEKPAEKSAVSTSVPTKPTENISKASSCTPVPVTMTATP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 VEDMELSDVEDDGSKIIVEDRKEKPAEKSAVSTSVPTKPTENISKASSCTPVPVTMTATP
             350       360       370       380       390       400 

              400       410       420       430       440       450
pF1KA0 PLPKPVNTSLSPSPALALPNLANVDLAKISSILSSLTSVMKNTGVSPASRPSPGTPTSPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 PLPKPVNTSLSPSPALALPNLANVDLAKISSILSSLTSVMKNTGVSPASRPSPGTPTSPS
             410       420       430       440       450       460 

              460       470       480       490       500       510
pF1KA0 NLTSGLKTPAPATTTSHNPLANILSKVEITPESILSALSKTQTQSAPALQGLSSLLQSVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 NLTSGLKTPAPATTTSHNPLANILSKVEITPESILSALSKTQTQSAPALQGLSSLLQSVT
             470       480       490       500       510       520 

              520       530       540       550       560       570
pF1KA0 GNPVPASEAASQSTSASPANTTVSTIKGRNLPSSAQPFIPKSFNYSPNSSTSEVSSTSAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 GNPVPASEAASQSTSASPANTTVSTIKGRNLPSSAQPFIPKSFNYSPNSSTSEVSSTSAS
             530       540       550       560       570       580 

              580       590       600       610       620       630
pF1KA0 KASIGQSPGLPSTTFKLPSNSLGFTATHNTSPAAPPTEVTICQSSEVSKPKLESESTSPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 KASIGQSPGLPSTTFKLPSNSLGFTATHNTSPAAPPTEVTICQSSEVSKPKLESESTSPS
             590       600       610       620       630       640 

              640       650       660       670       680       690
pF1KA0 LEMKIHNFLKGNPGFSGLNLNIPILSSLGSSAPSESHPSDFQRGPTSTSIDNIDGTPVRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 LEMKIHNFLKGNPGFSGLNLNIPILSSLGSSAPSESHPSDFQRGPTSTSIDNIDGTPVRD
             650       660       670       680       690       700 

              700       710       720       730       740       750
pF1KA0 ERSGTPTQDEMMDKPTSSSVDTMSLLSKIISPGSSTPSSTRSPPPGRDESYPRELSNSVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 ERSGTPTQDEMMDKPTSSSVDTMSLLSKIISPGSSTPSSTRSPPPGRDESYPRELSNSVS
             710       720       730       740       750       760 

              760       770       780       790       800       810
pF1KA0 TYRPFGLGSESPYKQPSDGMERPSSLMDSSQEKFYPDTSFQEDEDYRDFEYSGPPPSAMM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 TYRPFGLGSESPYKQPSDGMERPSSLMDSSQEKFYPDTSFQEDEDYRDFEYSGPPPSAMM
             770       780       790       800       810       820 

              820       830       840       850       860       870
pF1KA0 NLEKKPAKSILKSSKLSDTTEYQPILSSYSHRAQEFGVKSAFPPSVRALLDSSENCDRLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 NLEKKPAKSILKSSKLSDTTEYQPILSSYSHRAQEFGVKSAFPPSVRALLDSSENCDRLS
             830       840       850       860       870       880 

              880       890       900       910       920       930
pF1KA0 SSPGLFGAFSVRGNEPGSDRSPSPSKNDSFFTPDSNHNSLSQSTTGHLSLPQKQYPDSPH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 SSPGLFGAFSVRGNEPGSDRSPSPSKNDSFFTPDSNHNSLSQSTTGHLSLPQKQYPDSPH
             890       900       910       920       930       940 

              940       950       960       970       980       990
pF1KA0 PVPHRSLFSPQNTLAAPTGHPPTSGVEKVLASTISTTSTIEFKNMLKNASRKPSDDKHFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 PVPHRSLFSPQNTLAAPTGHPPTSGVEKVLASTISTTSTIEFKNMLKNASRKPSDDKHFG
             950       960       970       980       990      1000 

             1000      1010      1020      1030      1040      1050
pF1KA0 QAPSKGTPSDGVSLSNLTQPSLTATDQQQQEEHYRIETRVSSSCLDLPDSTEEKGAPIET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 QAPSKGTPSDGVSLSNLTQPSLTATDQQQQEEHYRIETRVSSSCLDLPDSTEEKGAPIET
            1010      1020      1030      1040      1050      1060 

             1060      1070      1080      1090      1100      1110
pF1KA0 LGYHSASNRRMSGEPIQTVESIRVPGKGNRGHGREASRVGWFDLSTSGSSFDNGPSSASE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 LGYHSASNRRMSGEPIQTVESIRVPGKGNRGHGREASRVGWFDLSTSGSSFDNGPSSASE
            1070      1080      1090      1100      1110      1120 

             1120      1130      1140      1150      1160      1170
pF1KA0 LASLGGGGSGGLTGFKTAPYKERAPQFQESVGSFRSNSFNSTFEHHLPPSPLEHGTPFQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 LASLGGGGSGGLTGFKTAPYKERAPQFQESVGSFRSNSFNSTFEHHLPPSPLEHGTPFQR
            1130      1140      1150      1160      1170      1180 

             1180      1190      1200      1210      1220      1230
pF1KA0 EPVGPSSAPPVPPKDHGGIFSRDAPTHLPSVDLSNPFTKEAALAHAAPPPPPGEHSGIPF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 EPVGPSSAPPVPPKDHGGIFSRDAPTHLPSVDLSNPFTKEAALAHAAPPPPPGEHSGIPF
            1190      1200      1210      1220      1230      1240 

             1240      1250      1260      1270      1280      1290
pF1KA0 PTPPPPPPPGEHSSSGGSGVPFSTPPPPPPPVDHSGVVPFPAPPLAEHGVAGAVAVFPKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 PTPPPPPPPGEHSSSGGSGVPFSTPPPPPPPVDHSGVVPFPAPPLAEHGVAGAVAVFPKD
            1250      1260      1270      1280      1290      1300 

             1300      1310      1320      1330      1340      1350
pF1KA0 HSSLLQGTLAEHFGVLPGPRDHGGPTQRDLNGPGLSRVRESLTLPSHSLEHLGPPHGGGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 HSSLLQGTLAEHFGVLPGPRDHGGPTQRDLNGPGLSRVRESLTLPSHSLEHLGPPHGGGG
            1310      1320      1330      1340      1350      1360 

             1360      1370      1380      1390      1400      1410
pF1KA0 GGGSNSSSGPPLGPSHRDTISRSGIILRSPRPDFRPREPFLSRDPFHSLKRPRPPFARGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 GGGSNSSSGPPLGPSHRDTISRSGIILRSPRPDFRPREPFLSRDPFHSLKRPRPPFARGP
            1370      1380      1390      1400      1410      1420 

             1420    
pF1KA0 PFFAPKRPFFPPRY
       ::::::::::::::
CCDS72 PFFAPKRPFFPPRY
            1430     




1424 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 02:38:09 2016 done: Sat Nov  5 02:38:10 2016
 Total Scan time:  7.190 Total Display time:  0.190

Function used was FASTA [36.3.4 Apr, 2011]
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