Result of FASTA (omim) for pF1KB6319
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6319, 260 aa
  1>>>pF1KB6319 260 - 260 aa - 260 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4133+/-0.000344; mu= 14.5921+/- 0.022
 mean_var=68.3058+/-13.427, 0's: 0 Z-trim(114.9): 16  B-trim: 63 in 3/55
 Lambda= 0.155183
 statistics sampled from 24935 (24945) to 24935 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.677), E-opt: 0.2 (0.292), width:  16
 Scan time:  6.470

The best scores are:                                      opt bits E(85289)
NP_001010844 (OMIM: 615375) interleukin-1 receptor ( 260) 1675 383.6 1.9e-106
XP_011533749 (OMIM: 615375) PREDICTED: interleukin ( 257) 1604 367.7 1.1e-101
XP_006715399 (OMIM: 615375) PREDICTED: interleukin ( 279) 1604 367.8 1.2e-101
XP_016865753 (OMIM: 615375) PREDICTED: interleukin ( 156)  824 193.0 2.7e-49
XP_016865754 (OMIM: 615375) PREDICTED: interleukin ( 150)  805 188.7 5.1e-48
XP_011533750 (OMIM: 615375) PREDICTED: interleukin ( 157)  804 188.5 6.1e-48


>>NP_001010844 (OMIM: 615375) interleukin-1 receptor-ass  (260 aa)
 initn: 1675 init1: 1675 opt: 1675  Z-score: 2032.2  bits: 383.6 E(85289): 1.9e-106
Smith-Waterman score: 1675; 100.0% identity (100.0% similar) in 260 aa overlap (1-260:1-260)

               10        20        30        40        50        60
pF1KB6 MSLQKTPPTRVFVELVPWADRSRENNLASGRETLPGLRHPLSSTQAQTATREVQVSGTSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSLQKTPPTRVFVELVPWADRSRENNLASGRETLPGLRHPLSSTQAQTATREVQVSGTSE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 VSAGPDRAQVVVRVSSTKEAAAEAKKSVCRRLDYITQSLQQQGVQAENITVTKDFRRVEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VSAGPDRAQVVVRVSSTKEAAAEAKKSVCRRLDYITQSLQQQGVQAENITVTKDFRRVEN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 AYHMEAEVCITFTEFGKMQNICNFLVEKLDSSVVISPPQFYHTPGSVENLRRQACLVAVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AYHMEAEVCITFTEFGKMQNICNFLVEKLDSSVVISPPQFYHTPGSVENLRRQACLVAVE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 NAWRKAQEVCNLVGQTLGKPLLIKEEETKEWEGQIDDHQSSRLSSSLTVQQKIKSATIHA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NAWRKAQEVCNLVGQTLGKPLLIKEEETKEWEGQIDDHQSSRLSSSLTVQQKIKSATIHA
              190       200       210       220       230       240

              250       260
pF1KB6 ASKVFITFEVKGKEKRKKHL
       ::::::::::::::::::::
NP_001 ASKVFITFEVKGKEKRKKHL
              250       260

>>XP_011533749 (OMIM: 615375) PREDICTED: interleukin-1 r  (257 aa)
 initn: 1604 init1: 1604 opt: 1604  Z-score: 1946.4  bits: 367.7 E(85289): 1.1e-101
Smith-Waterman score: 1604; 100.0% identity (100.0% similar) in 249 aa overlap (1-249:1-249)

               10        20        30        40        50        60
pF1KB6 MSLQKTPPTRVFVELVPWADRSRENNLASGRETLPGLRHPLSSTQAQTATREVQVSGTSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSLQKTPPTRVFVELVPWADRSRENNLASGRETLPGLRHPLSSTQAQTATREVQVSGTSE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 VSAGPDRAQVVVRVSSTKEAAAEAKKSVCRRLDYITQSLQQQGVQAENITVTKDFRRVEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VSAGPDRAQVVVRVSSTKEAAAEAKKSVCRRLDYITQSLQQQGVQAENITVTKDFRRVEN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 AYHMEAEVCITFTEFGKMQNICNFLVEKLDSSVVISPPQFYHTPGSVENLRRQACLVAVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AYHMEAEVCITFTEFGKMQNICNFLVEKLDSSVVISPPQFYHTPGSVENLRRQACLVAVE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 NAWRKAQEVCNLVGQTLGKPLLIKEEETKEWEGQIDDHQSSRLSSSLTVQQKIKSATIHA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NAWRKAQEVCNLVGQTLGKPLLIKEEETKEWEGQIDDHQSSRLSSSLTVQQKIKSATIHA
              190       200       210       220       230       240

              250       260
pF1KB6 ASKVFITFEVKGKEKRKKHL
       :::::::::           
XP_011 ASKVFITFEKLLRRGGV   
              250          

>>XP_006715399 (OMIM: 615375) PREDICTED: interleukin-1 r  (279 aa)
 initn: 1604 init1: 1604 opt: 1604  Z-score: 1945.8  bits: 367.8 E(85289): 1.2e-101
Smith-Waterman score: 1604; 100.0% identity (100.0% similar) in 249 aa overlap (1-249:1-249)

               10        20        30        40        50        60
pF1KB6 MSLQKTPPTRVFVELVPWADRSRENNLASGRETLPGLRHPLSSTQAQTATREVQVSGTSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MSLQKTPPTRVFVELVPWADRSRENNLASGRETLPGLRHPLSSTQAQTATREVQVSGTSE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 VSAGPDRAQVVVRVSSTKEAAAEAKKSVCRRLDYITQSLQQQGVQAENITVTKDFRRVEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 VSAGPDRAQVVVRVSSTKEAAAEAKKSVCRRLDYITQSLQQQGVQAENITVTKDFRRVEN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 AYHMEAEVCITFTEFGKMQNICNFLVEKLDSSVVISPPQFYHTPGSVENLRRQACLVAVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 AYHMEAEVCITFTEFGKMQNICNFLVEKLDSSVVISPPQFYHTPGSVENLRRQACLVAVE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 NAWRKAQEVCNLVGQTLGKPLLIKEEETKEWEGQIDDHQSSRLSSSLTVQQKIKSATIHA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 NAWRKAQEVCNLVGQTLGKPLLIKEEETKEWEGQIDDHQSSRLSSSLTVQQKIKSATIHA
              190       200       210       220       230       240

              250       260                   
pF1KB6 ASKVFITFEVKGKEKRKKHL                   
       :::::::::                              
XP_006 ASKVFITFEQLLESFFNIPTNNYSQIAMSPVNYHESHIK
              250       260       270         

>>XP_016865753 (OMIM: 615375) PREDICTED: interleukin-1 r  (156 aa)
 initn: 824 init1: 824 opt: 824  Z-score: 1005.9  bits: 193.0 E(85289): 2.7e-49
Smith-Waterman score: 824; 100.0% identity (100.0% similar) in 126 aa overlap (124-249:1-126)

           100       110       120       130       140       150   
pF1KB6 YITQSLQQQGVQAENITVTKDFRRVENAYHMEAEVCITFTEFGKMQNICNFLVEKLDSSV
                                     ::::::::::::::::::::::::::::::
XP_016                               MEAEVCITFTEFGKMQNICNFLVEKLDSSV
                                             10        20        30

           160       170       180       190       200       210   
pF1KB6 VISPPQFYHTPGSVENLRRQACLVAVENAWRKAQEVCNLVGQTLGKPLLIKEEETKEWEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VISPPQFYHTPGSVENLRRQACLVAVENAWRKAQEVCNLVGQTLGKPLLIKEEETKEWEG
               40        50        60        70        80        90

           220       230       240       250       260             
pF1KB6 QIDDHQSSRLSSSLTVQQKIKSATIHAASKVFITFEVKGKEKRKKHL             
       ::::::::::::::::::::::::::::::::::::                        
XP_016 QIDDHQSSRLSSSLTVQQKIKSATIHAASKVFITFEQLLESFFNIPTNNYSQIAMSPVNY
              100       110       120       130       140       150

XP_016 HESHIK
             

>>XP_016865754 (OMIM: 615375) PREDICTED: interleukin-1 r  (150 aa)
 initn: 804 init1: 804 opt: 805  Z-score: 983.1  bits: 188.7 E(85289): 5.1e-48
Smith-Waterman score: 805; 92.2% identity (95.0% similar) in 141 aa overlap (1-141:1-140)

               10        20        30        40        50        60
pF1KB6 MSLQKTPPTRVFVELVPWADRSRENNLASGRETLPGLRHPLSSTQAQTATREVQVSGTSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSLQKTPPTRVFVELVPWADRSRENNLASGRETLPGLRHPLSSTQAQTATREVQVSGTSE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 VSAGPDRAQVVVRVSSTKEAAAEAKKSVCRRLDYITQSLQQQGVQAENITVTKDFRRVEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VSAGPDRAQVVVRVSSTKEAAAEAKKSVCRRLDYITQSLQQQGVQAENITVTKDFRRVEN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 AYHMEAEVCITFTEFGKMQNICNFLVEKLDSSVVISPPQFYHTPGSVENLRRQACLVAVE
       :::::::    : ..  ::..                                       
XP_016 AYHMEAEKLHIFEKIF-MQSVPLKCISYESI                             
              130        140       150                             

>>XP_011533750 (OMIM: 615375) PREDICTED: interleukin-1 r  (157 aa)
 initn: 804 init1: 804 opt: 804  Z-score: 981.6  bits: 188.5 E(85289): 6.1e-48
Smith-Waterman score: 804; 100.0% identity (100.0% similar) in 127 aa overlap (1-127:1-127)

               10        20        30        40        50        60
pF1KB6 MSLQKTPPTRVFVELVPWADRSRENNLASGRETLPGLRHPLSSTQAQTATREVQVSGTSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSLQKTPPTRVFVELVPWADRSRENNLASGRETLPGLRHPLSSTQAQTATREVQVSGTSE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 VSAGPDRAQVVVRVSSTKEAAAEAKKSVCRRLDYITQSLQQQGVQAENITVTKDFRRVEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VSAGPDRAQVVVRVSSTKEAAAEAKKSVCRRLDYITQSLQQQGVQAENITVTKDFRRVEN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 AYHMEAEVCITFTEFGKMQNICNFLVEKLDSSVVISPPQFYHTPGSVENLRRQACLVAVE
       :::::::                                                     
XP_011 AYHMEAEQLLESFFNIPTNNYSQIAMSPVNYHESHIK                       
              130       140       150                              




260 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 22:41:29 2016 done: Fri Nov  4 22:41:30 2016
 Total Scan time:  6.470 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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