Result of FASTA (ccds) for pF1KB8996
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8996, 407 aa
  1>>>pF1KB8996 407 - 407 aa - 407 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.6919+/-0.000857; mu= 5.3431+/- 0.052
 mean_var=244.1589+/-49.616, 0's: 0 Z-trim(116.2): 32  B-trim: 430 in 1/53
 Lambda= 0.082080
 statistics sampled from 16746 (16778) to 16746 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.804), E-opt: 0.2 (0.515), width:  16
 Scan time:  2.930

The best scores are:                                      opt bits E(32554)
CCDS2132.1 INHBB gene_id:3625|Hs108|chr2           ( 407) 2859 350.9 1.3e-96
CCDS5464.1 INHBA gene_id:3624|Hs108|chr7           ( 426)  700 95.2 1.2e-19
CCDS8938.1 INHBC gene_id:3626|Hs108|chr12          ( 352)  623 86.0 5.9e-17
CCDS8939.1 INHBE gene_id:83729|Hs108|chr12         ( 350)  552 77.6   2e-14


>>CCDS2132.1 INHBB gene_id:3625|Hs108|chr2                (407 aa)
 initn: 2859 init1: 2859 opt: 2859  Z-score: 1848.0  bits: 350.9 E(32554): 1.3e-96
Smith-Waterman score: 2859; 100.0% identity (100.0% similar) in 407 aa overlap (1-407:1-407)

               10        20        30        40        50        60
pF1KB8 MDGLPGRALGAACLLLLAAGWLGPEAWGSPTPPPTPAAPPPPPPPGSPGGSQDTCTSCGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 MDGLPGRALGAACLLLLAAGWLGPEAWGSPTPPPTPAAPPPPPPPGSPGGSQDTCTSCGG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 FRRPEELGRVDGDFLEAVKRHILSRLQMRGRPNITHAVPKAAMVTALRKLHAGKVREDGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 FRRPEELGRVDGDFLEAVKRHILSRLQMRGRPNITHAVPKAAMVTALRKLHAGKVREDGR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 VEIPHLDGHASPGADGQERVSEIISFAETDGLASSRVRLYFFISNEGNQNLFVVQASLWL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 VEIPHLDGHASPGADGQERVSEIISFAETDGLASSRVRLYFFISNEGNQNLFVVQASLWL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 YLKLLPYVLEKGSRRKVRVKVYFQEQGHGDRWNMVEKRVDLKRSGWHTFPLTEAIQALFE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 YLKLLPYVLEKGSRRKVRVKVYFQEQGHGDRWNMVEKRVDLKRSGWHTFPLTEAIQALFE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 RGERRLNLDVQCDSCQELAVVPVFVDPGEESHRPFVVVQARLGDSRHRIRKRGLECDGRT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 RGERRLNLDVQCDSCQELAVVPVFVDPGEESHRPFVVVQARLGDSRHRIRKRGLECDGRT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 NLCCRQQFFIDFRLIGWNDWIIAPTGYYGNYCEGSCPAYLAGVPGSASSFHTAVVNQYRM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 NLCCRQQFFIDFRLIGWNDWIIAPTGYYGNYCEGSCPAYLAGVPGSASSFHTAVVNQYRM
              310       320       330       340       350       360

              370       380       390       400       
pF1KB8 RGLNPGTVNSCCIPTKLSTMSMLYFDDEYNIVKRDVPNMIVEECGCA
       :::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 RGLNPGTVNSCCIPTKLSTMSMLYFDDEYNIVKRDVPNMIVEECGCA
              370       380       390       400       

>>CCDS5464.1 INHBA gene_id:3624|Hs108|chr7                (426 aa)
 initn: 1151 init1: 437 opt: 700  Z-score: 466.1  bits: 95.2 E(32554): 1.2e-19
Smith-Waterman score: 1131; 43.3% identity (69.7% similar) in 413 aa overlap (43-407:22-426)

             20        30        40        50         60        70 
pF1KB8 CLLLLAAGWLGPEAWGSPTPPPTPAAPPPPPPPGSPGGSQ-DTCTSCGGFRRPEELGRVD
                                     : ::: : :    : ::.    :...   .
CCDS54          MPLLWLRGFLLASCWIIVRSSPTPGSEGHSAAPDCPSCALAALPKDVPNSQ
                        10        20        30        40        50 

              80        90       100       110       120       130 
pF1KB8 GDFLEAVKRHILSRLQMRGRPNITHAVPKAAMVTALRKLHAGKVREDGRVEIPHLDGHAS
        ...::::.:::. :... ::..:. :::::...:.::::.::: :.: :::    :. .
CCDS54 PEMVEAVKKHILNMLHLKKRPDVTQPVPKAALLNAIRKLHVGKVGENGYVEIEDDIGRRA
              60        70        80        90       100       110 

             140       150       160       170       180       190 
pF1KB8 PGADGQERVSEIISFAETDGLASSRVRLYFFISNEGNQNLFVVQASLWLYLKLLPYVLEK
          . .:..::::.:::.   ...:  :.: ::.::..   : .: .::.::. :    :
CCDS54 EMNELMEQTSEIITFAES---GTARKTLHFEISKEGSDLSVVERAEVWLFLKV-P----K
             120          130       140       150       160        

             200                         210         220       230 
pF1KB8 GSRRKVRVKVY-FQEQGH-----------------GDRWNMV--EKRVDLKRSGWHTFPL
       ..: ...: .  ::.: :                 :.: ...  :: :: ..: ::.::.
CCDS54 ANRTRTKVTIRLFQQQKHPQGSLDTGEEAEEVGLKGERSELLLSEKVVDARKSTWHVFPV
           170       180       190       200       210       220   

             240       250       260                               
pF1KB8 TEAIQALFERGERRLNLDVQCDSCQELAVVPVFV-------DPGE---------------
       . .:: :...:.  :.. . :..::: ..  :..       . ::               
CCDS54 SSSIQRLLDQGKSSLDVRIACEQCQESGASLVLLGKKKKKEEEGEGKKKGGGEGGAGADE
           230       240       250       260       270       280   

        270       280        290       300       310       320     
pF1KB8 ---ESHRPFVVVQARLG-DSRHRIRKRGLECDGRTNLCCRQQFFIDFRLIGWNDWIIAPT
          .:::::...::: . :  :: :.:::::::..:.::..:::..:. ::::::::::.
CCDS54 EKEQSHRPFLMLQARQSEDHPHRRRRRGLECDGKVNICCKKQFFVSFKDIGWNDWIIAPS
           290       300       310       320       330       340   

         330       340       350       360        370       380    
pF1KB8 GYYGNYCEGSCPAYLAGVPGSASSFHTAVVNQYRMRGLNP-GTVNSCCIPTKLSTMSMLY
       ::..::::: ::...::. ::. :::..:.:.::::: .: ....:::.::::  :::::
CCDS54 GYHANYCEGECPSHIAGTSGSSLSFHSTVINHYRMRGHSPFANLKSCCVPTKLRPMSMLY
           350       360       370       380       390       400   

          390       400       
pF1KB8 FDDEYNIVKRDVPNMIVEECGCA
       .::  ::.:.:. :::::::::.
CCDS54 YDDGQNIIKKDIQNMIVEECGCS
           410       420      

>>CCDS8938.1 INHBC gene_id:3626|Hs108|chr12               (352 aa)
 initn: 709 init1: 338 opt: 623  Z-score: 417.8  bits: 86.0 E(32554): 5.9e-17
Smith-Waterman score: 776; 38.3% identity (64.6% similar) in 373 aa overlap (42-407:14-352)

              20        30        40         50        60          
pF1KB8 ACLLLLAAGWLGPEAWGSPTPPPTPAAPPPPPPPGSP-GGSQDTCTSCGGFRRPE-ELGR
                                     :   ..: .:.:  : .:::   :  ::  
CCDS89                  MTSSLLLAFLLLAPTTVATPRAGGQ--CPACGG---PTLELES
                                10        20          30           

      70        80        90       100       110       120         
pF1KB8 VDGDFLEAVKRHILSRLQMRGRPNITHAVPKAAMVTALRKLHAGKVREDGRVEIPHLDGH
           .:. .:: ::..:..  ::.... : .::. :::..::.          .:.    
CCDS89 QRELLLDLAKRSILDKLHLTQRPTLNRPVSRAALRTALQHLHG----------VPQ----
       40        50        60        70        80                  

     130       140       150        160        170       180       
pF1KB8 ASPGADGQERVSEIISFAETDGLAS-SRVRLYF-FISNEGNQNLFVVQASLWLYLKLLPY
       ..   :..:.  :::::::: ::.. ...:: : : :..   .  : :::: ....: : 
CCDS89 GALLEDNREQECEIISFAET-GLSTINQTRLDFHFSSDRTAGDREVQQASLMFFVQL-PS
           90       100        110       120       130       140   

       190       200       210        220       230       240      
pF1KB8 VLEKGSRRKVRVKVYFQEQGHGDRWNMVEKRV-DLKRSGWHTFPLTEAIQALFERGERRL
         .     :::: :      :.   ... . . ..  :::: .::    ::   .:.  :
CCDS89 --NTTWTLKVRVLVL---GPHNTNLTLATQYLLEVDASGWHQLPLGPEAQAACSQGHLTL
              150          160       170       180       190       

        250       260       270       280       290       300      
pF1KB8 NLDVQCDSCQELAVVPVFVDPGEESHRPFVVVQARLGDSRHRIRKRGLECDGRTNLCCRQ
       .: .. .  :  ...      :  .:::::....:.: ..:.:..::..:.: . .::::
CCDS89 ELVLEGQVAQSSVIL------GGAAHRPFVAARVRVG-GKHQIHRRGIDCQGGSRMCCRQ
       200       210             220        230       240       250

        310       320       330       340       350       360      
pF1KB8 QFFIDFRLIGWNDWIIAPTGYYGNYCEGSCPAYLAGVPGSASSFHTAVVNQYRMRGLNPG
       .::.::: :::.:::: : ::  :.: :.:: ..::.:: :.::::::.:  .  .   :
CCDS89 EFFVDFREIGWHDWIIQPEGYAMNFCIGQCPLHIAGMPGIAASFHTAVLNLLKA-NTAAG
              260       270       280       290       300          

          370       380       390       400       
pF1KB8 TVN--SCCIPTKLSTMSMLYFDDEYNIVKRDVPNMIVEECGCA
       :..  :::.::    .:.::.: . :::: :.:.:.:: :::.
CCDS89 TTGGGSCCVPTARRPLSLLYYDRDSNIVKTDIPDMVVEACGCS
     310       320       330       340       350  

>>CCDS8939.1 INHBE gene_id:83729|Hs108|chr12              (350 aa)
 initn: 627 init1: 278 opt: 552  Z-score: 372.4  bits: 77.6 E(32554): 2e-14
Smith-Waterman score: 668; 36.2% identity (59.9% similar) in 367 aa overlap (50-407:21-350)

      20        30        40        50        60        70         
pF1KB8 GWLGPEAWGSPTPPPTPAAPPPPPPPGSPGGSQDTCTSCGGFRRPEELGRVDGDFLEAVK
                                     :. ..: :::: .   .  :.    :: .:
CCDS89           MRLPDVQLWLVLLWALVRAQGTGSVCPSCGGSKLAPQAERAL--VLELAK
                         10        20        30        40          

      80        90       100       110       120       130         
pF1KB8 RHILSRLQMRGRPNITHAVPKAAMVTALRKLHAGKVREDGRVEIPHLDGHASPGADGQER
       ..::. :.. .:: :::  :.::.. :::.:. :.:               .:: .:.: 
CCDS89 QQILDGLHLTSRPRITHPPPQAALTRALRRLQPGSV---------------APG-NGEE-
       50        60        70        80                        90  

     140        150       160       170       180        190       
pF1KB8 VSEIISFAE-TDGLASSRVRLYFFISNEGNQNLFVVQASLWLY-LKLLPYVLEKGSRRKV
          .::::  ::. ..    : : .:.  ...:.  .: :::. :  :: .:     :  
CCDS89 ---VISFATVTDSTSAYSSLLTFHLSTPRSHHLY--HARLWLHVLPTLPGTL---CLRIF
                100       110       120         130          140   

       200       210       220       230       240       250       
pF1KB8 RVKVYFQEQGHGDRWNMVEKRVDLKRSGWHTFPLTEAIQALFERGERRLNLDVQCDSCQE
       :     ..::  .:  ..:...     ::::. :  .  .:  :::.   : .: : :. 
CCDS89 RWGPRRRRQG--SRTLLAEHHIT--NLGWHTLTLPSS--GL--RGEKSGVLKLQLD-CRP
           150         160         170           180       190     

        260           270        280        290       300       310
pF1KB8 L-AVVPVFVDP----GEESHR-PFVVVQARLGD-SRHRIRKRGLECDGRTNLCCRQQFFI
       : .   :  .:       .:. ::. .. : .. .  : :.:   :.  : ::::.. ..
CCDS89 LEGNSTVTGQPRRLLDTAGHQQPFLELKIRANEPGAGRARRRTPTCEPATPLCCRRDHYV
          200       210       220       230       240       250    

              320       330       340       350       360       370
pF1KB8 DFRLIGWNDWIIAPTGYYGNYCEGSCPAYLAGVPGSASSFHTAVVNQYRMRGLNPGTVNS
       ::. .:: :::. : ::  ::: :.:: .::: :: :.:::.:: .  .  .  :... :
CCDS89 DFQELGWRDWILQPEGYQLNYCSGQCPPHLAGSPGIAASFHSAVFSLLKANNPWPAST-S
          260       270       280       290       300       310    

              380       390       400       
pF1KB8 CCIPTKLSTMSMLYFDDEYNIVKRDVPNMIVEECGCA
       ::.::    .:.::.: . :.:: :::.:.:: :::.
CCDS89 CCVPTARRPLSLLYLDHNGNVVKTDVPDMVVEACGCS
           320       330       340       350




407 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 00:52:21 2016 done: Sat Nov  5 00:52:22 2016
 Total Scan time:  2.930 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com