GENSCAN 1.0	Date run:  4-Nov-116	Time: 22:18:53

Sequence gi568815591f:107079894_107300302 : 220409 bp : 38.24% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.04 PlyA -    116    111    6                               1.05
 1.03 Term -    385    237  149  2  2   47   42   154 0.001   3.78
 1.02 Intr -   2195   2158   38  1  2   98  107    24 0.001   2.29
 1.01 Init -  11696  11545  152  2  2   82   73   112 0.875   8.66
 1.00 Prom -  14103  14064   40                              -3.65

 2.02 PlyA -  14862  14857    6                               1.05
 2.01 Sngl -  15397  14906  492  1  0   60   48   241 0.716  13.10
 2.00 Prom -  16796  16757   40                              -9.95

 3.02 PlyA -  16850  16845    6                               1.05
 3.01 Sngl -  18745  18257  489  1  0   88   38   361 0.938  26.91
 3.00 Prom -  20123  20084   40                              -6.55

 4.00 Prom +  22499  22538   40                              -3.15
 4.01 Init +  25534  25663  130  0  1   43   57    95 0.004   2.26
 4.02 Intr +  42059  42111   53  0  2   56   75   111 0.241   4.31
 4.03 Intr +  48319  48402   84  0  0   64  111    85 0.775   7.50
 4.04 Intr +  60954  61060  107  2  2   40   97   115 0.219   5.69
 4.05 Intr +  66415  66568  154  1  1   56   97   149 0.945  11.75
 4.06 Intr +  71029  71130  102  0  0  101  107     7 0.904   3.35
 4.07 Intr +  73284  73358   75  2  0  107   80   109 0.979  10.79
 4.08 Intr +  77293  77431  139  0  1   54   63   105 0.992   3.72
 4.09 Term +  79556  79689  134  0  2   62   48   134 0.990   4.07
 4.10 PlyA +  79825  79830    6                               1.05

 5.00 Prom +  84100  84139   40                              -5.15
 5.01 Init +  87545  87591   47  1  2   68   76    33 0.831   0.32
 5.02 Term +  88684  89041  358  1  1  102   48   250 0.933  15.40
 5.03 PlyA +  91629  91634    6                               1.05

 6.00 Prom +  99553  99592   40                              -3.25
 6.01 Init + 100001 100169  169  1  1   68   99   123 0.958  11.15
 6.02 Intr + 102480 102708  229  1  1   92   63   229 0.989  16.81
 6.03 Intr + 105908 106049  142  2  1   50  110    68 0.968   4.63
 6.04 Intr + 109399 109555  157  0  1   58   97    78 0.869   4.36
 6.05 Intr + 110280 110424  145  1  1   69   85   104 0.973   6.62
 6.06 Intr + 115941 116258  318  0  0   75   98   207 0.831  14.55
 6.07 Intr + 120267 120408  142  0  1   54   36   121 0.508   2.93
 6.08 Intr + 122108 122210  103  1  1   11   98    70 0.401  -0.87
 6.09 Term + 124499 124575   77  0  2   91   32   109 0.282   2.62
 6.10 PlyA + 125641 125646    6                               1.05

 7.06 PlyA - 126080 126075    6                               1.05
 7.05 Term - 128807 128693  115  1  1   84   41    52 0.281  -2.84
 7.04 Intr - 130712 130633   80  2  2   70  103    80 0.898   5.13
 7.03 Intr - 131316 131206  111  0  0   98   90    60 0.898   6.86
 7.02 Intr - 140884 140760  125  2  2   29   66    76 0.726  -1.12
 7.01 Init - 141314 141218   97  2  1   55   61   120 0.436   6.52
 7.00 Prom - 142044 142005   40                              -8.75

 8.08 PlyA - 142067 142062    6                              -0.45
 8.07 Term - 143270 143091  180  2  0  113   38   153 0.873   9.43
 8.06 Intr - 156794 156557  238  1  1  107   88   196 0.671  18.19
 8.05 Intr - 168606 168503  104  0  2  124   26   105 0.057   5.95
 8.04 Intr - 178490 178380  111  2  0   45   88    57 0.056   1.06
 8.03 Intr - 201506 201407  100  1  1   89   89    69 0.587   6.29
 8.02 Intr - 203839 203678  162  0  0   53   95   119 0.803   7.27
 8.01 Intr - 218453 218249  205  0  1   84   27   173 0.136   8.14

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term -  10433  10256  178  1  1   73   46   132 0.983   3.68
S.002 Term - 218453 218230  224  0  2   84   43   179 0.849   9.10


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815591f:107079894_107300302|GENSCAN_predicted_peptide_1|112_aa
MQEPSEPAGMADSHSQALTVHLLQGTDSLSGMCTQLLCACALCGIGLVESGLPLSNLLKL
STSDGTTSCTQWDLKDSEGTLWLPTLASGPLHGAPTETSVLLREPRHTDAPS

>gi568815591f:107079894_107300302|GENSCAN_predicted_CDS_1|339_bp
atgcaggaaccaagtgagcctgcaggaatggcagattcacattcacaggctctcactgtc
cacctactgcagggcacagactcactgagtggaatgtgcacgcagctcctttgtgcttgt
gctctctgtggcataggtttagtagaatcaggattaccactcagcaacctgctaaaactc
agcacgtctgacggtaccacttcctgcacacagtgggatctgaaagatagtgagggcacg
ctgtggctccccacactggcatctggaccactccatggtgctcccactgaaacctctgtg
ctcctccgagagccacggcatacagatgccccttcctga

>gi568815591f:107079894_107300302|GENSCAN_predicted_peptide_2|163_aa
MSELPFTIASKRIKYLGIQLTRDVKDFFKENYKPLLNEIKEDTSKWKNISCSWIGRINIM
KMAILPKVIHRLNAIPIKLPMTSFTELEKTTLKFMWSQKRARIAKTILSQKNKAGGIMLP
DFKLSYKATVTKTAWYCYQNRYRSMEQNRALRNNTTHLQPSDL

>gi568815591f:107079894_107300302|GENSCAN_predicted_CDS_2|492_bp
atgagtgaactcccattcacaattgcttcaaagagaataaaatacctaggaatccaactt
acaagggatgtgaaggacttcttcaaggagaactacaaaccactgctcaacgaaataaaa
gaggacacaagcaaatggaagaacatttcatgctcatggataggaagaatcaatatcatg
aaaatggccatactgcccaaggtaattcacagactcaacgccatcccaatcaagctacca
atgacttccttcacagaattggaaaaaactactttaaagttcatgtggagccaaaaaaga
gcccgtattgccaagacaatcctaagtcaaaagaacaaagctggaggcatcatgctacct
gacttcaaactatcctacaaggccacagtaaccaaaacagcatggtactgttaccaaaac
agatatagatcaatggaacagaacagagccctcagaaataataccacacatctacaacca
tctgatctttga

>gi568815591f:107079894_107300302|GENSCAN_predicted_peptide_3|162_aa
MGRNQSRKANDSKNQSASSPPKEHSSSPPTEQSRKENDFDELREGGFRQSVITNFSKLKE
DVRTHCKEAKNLQKRLDKWLTRINSTDKTLNDLMELKTMAQELRDACTRFSSQFDQVEER
VSVTEDQMNEMKREDKFREKRVKRNEQSLQEIWDYVKDQICV

>gi568815591f:107079894_107300302|GENSCAN_predicted_CDS_3|489_bp
atggggagaaaccagagcagaaaagctaacgattctaaaaatcagagcgcctcttctcct
ccaaaagaacacagctcctcgccaccaacagaacaaagcaggaaagagaatgactttgac
gagttgagagaaggcggcttcagacaatcagtaataacaaacttctccaagctaaaggag
gatgttcgaacccactgcaaagaagctaaaaaccttcaaaaaagattagacaaatggcta
actagaataaacagtacagacaagaccttaaatgacctgatggagctgaaaaccatggca
caagaactacgtgatgcatgcacaagattcagtagccaatttgatcaagtggaagaaagg
gtatcagtgactgaagatcaaatgaatgaaatgaagcgagaagacaagtttagagaaaaa
agagtgaaaagaaatgaacaaagcctccaagaaatatgggactatgtgaaagaccaaatc
tgcgtctga

>gi568815591f:107079894_107300302|GENSCAN_predicted_peptide_4|325_aa
MVQPKEYVNLLIFGWLSIPVMVQDCKDSIPEKWVSTEKAAPLSICAEAYNPDEEEDDAES
RIIHPKTDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKDGEHVIDQGDDGDNF
YVIDRGTFDIYVKCDGVGRCVGNYDNRGSFGELALMYNTPRAATITATSPGALWGLDRVT
FRRIIVKNNAKKRKMYESFIESLPFLKSLEFSERLKVVDVIGTKVYNDGEQIIAQGKSEV
EENGAVEIARCSRGQYFGELALVTNKPRAASAHAIGTVKCLAMDVQAFERLLGPCMEIMK
RNIATYEEQLVALFGTNMDIVEPTA

>gi568815591f:107079894_107300302|GENSCAN_predicted_CDS_4|978_bp
atggtacaaccaaaggagtatgtgaatctcctaatttttggctggttgtcaatcccagtt
atggtacaagactgtaaagacagtatccctgagaaatgggtcagcactgagaaggctgct
cccttgtctatatgtgcagaagcttataatcctgatgaagaagaagatgatgcagagtcc
aggattatacatccaaaaactgatgatcaaagaaataggttgcaagaggcttgcaaagac
atcctgctgtttaagaatctggatccggagcagatgtctcaagtattagatgccatgttt
gaaaaattggtcaaagatggggagcatgtaattgatcaaggtgacgatggtgacaacttt
tatgtaattgatagaggcacatttgatatttatgtgaaatgtgatggtgttggaagatgt
gttggtaactatgataatcgtgggagtttcggcgaactggccttaatgtacaatacaccc
agagcagctacaatcactgctacctctcctggtgctctgtggggtttggacagggtaacc
ttcaggagaataattgtgaaaaacaatgccaaaaagagaaaaatgtatgaaagctttatt
gagtcactgccattccttaaatctttggagttttctgaacgcctgaaagtagtagatgtg
ataggcaccaaagtatacaacgatggagaacaaatcattgctcagggtaaatcagaagtg
gaagagaatggtgcagtagaaatcgctcgatgctcgcggggacagtactttggagagctt
gccctggtaactaacaaacctcgagcagcttctgcccacgccattgggactgtcaaatgt
ttagcaatggatgtgcaagcatttgaaaggcttctgggaccttgcatggaaattatgaaa
aggaacatcgctacctatgaagaacagttagttgccctgtttggaacgaacatggatatt
gttgaacccactgcatga

>gi568815591f:107079894_107300302|GENSCAN_predicted_peptide_5|134_aa
MWGLILDFLICYAAFRHQNKRADTRVPMTLVYYQDCAVRAPLGYVVQLFPGQQSPTAKDQ
GLRLRTHNPFRGQSLAWVPGLSAIVQSEALTLVIDMPSSPVNTTQKSIHARPPRRTTVPP
NGKGEEPNGSSAVQ

>gi568815591f:107079894_107300302|GENSCAN_predicted_CDS_5|405_bp
atgtgggggcttattttggatttcttgatttgttacgcggctttcagacaccaaaacaaa
cgagctgatacacgtgtccctatgactcttgtttactatcaagactgcgctgtgcgagcg
cctctgggatacgtagtccagctcttccccggccagcagtctcccacagccaaggaccaa
ggcttgagactacgaacccacaatccatttcggggacaaagtttggcttgggtccccgga
ctctcggcaatagtccaatccgaagcacttactcttgtgattgacatgccatcttctcca
gtaaacacaacacaaaagtcaatacatgcccgccccccgagacggaccacggtaccaccc
aatgggaaaggggaagaaccgaatggcagttctgcagtccaataa

>gi568815591f:107079894_107300302|GENSCAN_predicted_peptide_6|493_aa
MVWEVKTNQMPNAVQKLLLVMDKRASGMNDSLELLQCNENLPSSPGYNSCDEHMELDDLP
ELQAVQSDPTQSGMYQLSSDVSHQEYPRSSWNQNTSDIPETTYRENEVDWLTELANIATS
PQSPLMQCSFYNRSSPVHIIATSKSLHSYARPPPVSSSSKSEPAFPHHHWKEETPVRHER
GYGSDGLKLLSHEESVSFGESVLKLTFDPGTVEDGLLTVECKLDHPFYVKNKGWSSFYPS
LTVVQHGIPCCEVHIGDVCLPPGHPDAINFDDSGVFDTFKSYDFTPMDSSAVYVLSSMAR
QRRASLSCGGPGGQDFARSGFSKNCGSPGSSQLSSNSLYAKAVKNHSSGTVSATSPNKCK
RPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEERRMYTLEAKALAEEQK
RLNPDCWKRKRTNSPKSHLLQLPWHAELMHQVAAAIRYYFQWRPSPGQEKVRQSLNQIVC
LSGAKKNGYEINF

>gi568815591f:107079894_107300302|GENSCAN_predicted_CDS_6|1482_bp
atggtgtgggaagtgaagacaaatcagatgcctaatgcagtacagaaactcctgttggtg
atggacaagagagcctcaggaatgaatgactcattggagttgctgcagtgtaatgagaat
ttgccatcttcacctggatataactcctgtgatgaacacatggagcttgatgaccttcct
gaacttcaggcagttcaaagtgatcctacccaatctggcatgtaccagctgagttcagat
gtttcacatcaagaatacccaagatcatcttggaaccaaaatacctcagacataccagaa
actacttaccgtgaaaatgaggtggactggctaacagaattggcaaatatcgcgaccagt
ccacaaagtccactgatgcagtgctcattttacaatagatcatctcctgtacacatcata
gccactagcaaaagtttacattcctatgcacgccctccaccagtgtcctcttcttcgaag
agtgaaccagccttccctcatcaccattggaaggaggaaacaccagtaagacacgaaagg
ggctatggttctgatggtctaaagttgttatcacatgaagaaagtgtatcatttggcgag
tctgtactgaagttgacttttgatcctggtacagtagaagatggtttacttaccgtagag
tgtaagctggaccaccctttctatgttaaaaataaaggttggtcatcattttatccaagc
ttgactgtggtacagcatggcattccatgttgtgaagttcatattggcgatgtatgtcta
cctcctggacaccccgatgccattaattttgatgattcaggtgtttttgatacatttaaa
agctatgacttcacacctatggattcttctgcagtttatgtgttaagtagtatggctcgc
cagcgtcgtgcatctttgtcttgtggaggacctggtggtcaagactttgcaagatctgga
ttcagtaaaaactgtggctcacctggatcatcacagctctcttccaattctttgtatgct
aaagctgtcaaaaaccacagctcagggactgtgagtgccacttctcctaataagtgcaaa
agaccaatgaatgccttcatgctttttgccaaaaaatacagagttgaatatactcagatg
tatccagggaaagataacagagccataagtgtgatccttggtgacaggtggaagaaaatg
aagaatgaagagagaagaatgtacacattagaagcaaaggctttggctgaagaacagaaa
cgtttaaatcctgactgttggaagaggaaaagaaccaattcacctaagagccacctgctg
cagttaccatggcatgctgagttgatgcaccaggtggcagcagccatccgttattatttc
caatggagacctagcccaggccaagaaaaagttcgtcagtccctgaaccagatcgtctgt
ttaagtggagctaaaaagaatggctacgagattaatttttaa

>gi568815591f:107079894_107300302|GENSCAN_predicted_peptide_7|175_aa
MGSNGERENSQDQCTAEHDNQGQQDRSEGMKPVPFQGLGTPDLQYELVTRWRDFLLHFFP
AIAQTREQPRHNEQASEHVASSPALGDVIPFSIIIQFLFTRAPAELKSPFQRAEWSHTRF
SQWLDDHPSEKDRLLLISYEHLTQKWERLPAPVNVPGKICPRERLWIWVRSLGLG

>gi568815591f:107079894_107300302|GENSCAN_predicted_CDS_7|528_bp
atgggctctaatggagaaagggaaaactcacaggaccaatgtactgctgaacacgacaac
cagggacagcaggacagaagtgagggcatgaagccagtcccctttcagggcctgggcaca
ccagacctacaatatgaacttgtgacccggtggagggacttcttattacactttttccct
gcaatagctcaaacacgagagcagcctcgtcacaatgagcaggcaagtgaacatgtagcc
agtagtcctgcattgggggatgtgattccgttcagcatcattattcagtttttgttcacg
agagcacccgctgaactgaaatctcctttccagagggcagagtggtcccacacacgcttc
tctcagtggctggatgaccatccatctgaaaaggacaggctcctcctcatcagctatgaa
catctgacacagaaatgggagaggttaccagccccggtgaatgttcctggtaaaatctgc
cctcgggaaaggctttggatttgggtgaggagtttgggcctgggctaa

>gi568815591f:107079894_107300302|GENSCAN_predicted_peptide_8|366_aa
XSMFLKQAFEGEYPKLLRLYNDLWKRLQQYSQHIQGNFNASGTTDLYVDLQHMEDDAQDI
FIPKKPDYDPEKALKDSLQPYEAAYLSKSLSRLFDPINLVFPPGGRNPPSSDELDGIIKT
IASELNVAAVDTNLTLAVSKNVAKTIQLYSVKSEQLLSTQGDASQVIGPLTEGQRRNVAV
VNSLYKLHQSVTKAIHALMENAVQPLLTSVGDAIEAIIITMHQEDFSGSLSSSGKPDVPC
SLYMKELQGFIARVMSDYFKHFECLDFVFDNTEAIAQRAVELFIRHASLIRPLGEGGKMR
LAADFAQTSVRILSGLAAFPGPSARGGQDGVMASGMEENDAYICLRIPLMLDVDTGAAGF
LPYFTS

>gi568815591f:107079894_107300302|GENSCAN_predicted_CDS_8|1101_bp
ncttcgatgtttttgaagcaggcatttgaaggagaataccctaaattattacgtctttat
aatgacttatggaagcgtcttcaacaatacagtcagcatatccaagggaattttaatgca
agtggaactacagacctctatgttgacctacaacacatggaagatgatgcacaagatata
ttcataccaaaaaagccagattatgatccagaaaaggctttgaaagactcactacaaccc
tatgaggctgcttatctatcaaaatccttatctcgactcttcgatcctatcaacttggtt
tttcccccgggtggtcgtaatcctccttcctctgatgaacttgatggtattattaaaact
atagcaagtgaactaaatgttgctgctgttgatacaaacctcacattagctgtgtcaaaa
aatgtggcaaagaccatccagttatacagtgtaaaatcagagcagcttctctccacacaa
ggagatgcaagtcaggtgattgggcctcttactgaaggacagagaagaaatgtggcagta
gtgaattcattgtataagttgcaccaatcagtaacaaaggctattcatgctcttatggaa
aatgctgtgcaacccttactcacttctgtgggagatgctatagaggccataatcatcacc
atgcatcaagaagacttttctgggtcattatccagctcaggaaaacctgatgttccttgt
tctctgtacatgaaggagctacaaggtttcattgccagagttatgagtgactattttaaa
cactttgaatgcttggattttgtctttgacaacactgaggctattgcccaaagagctgtt
gaactttttatccgccatgccagtctcataagacctcttggtgaaggtgggaaaatgcga
cttgctgctgattttgcacagacctcagtacgcatacttagtggtcttgctgccttccca
ggcccttcagcaagaggaggtcaagatggggtgatggcaagtggcatggaagagaatgat
gcctatatctgtctcaggataccactgatgttagatgtggacacaggagcagcaggattt
ttgccttactttacttcatga